Wall clock time and date at job start Wed Apr 1 2020 04:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99615 * 2 1 4 4 H 1.08996 * 110.88821 * 32.42704 * 3 2 1 5 5 C 1.54907 * 111.00338 * 268.54180 * 3 2 1 6 6 N 1.47424 * 104.83241 * 204.88136 * 5 3 2 7 7 C 1.36943 * 125.64955 * 204.09232 * 6 5 3 8 8 H 1.08002 * 119.99788 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99622 * 0.30258 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48501 * 109.46896 * 89.99850 * 11 9 7 13 13 H 1.48499 * 109.47039 * 210.00011 * 11 9 7 14 14 H 1.48501 * 109.47275 * 329.99811 * 11 9 7 15 15 C 1.47024 * 108.70428 * 24.35838 * 6 5 3 16 16 C 1.54336 * 107.26414 * 358.58383 * 15 6 5 17 17 H 1.09001 * 110.51267 * 96.44857 * 16 15 6 18 18 N 1.46497 * 111.00488 * 219.60321 * 16 15 6 19 19 C 1.34783 * 119.99813 * 268.78501 * 18 16 15 20 20 O 1.21575 * 119.99872 * 359.97438 * 19 18 16 21 21 C 1.47657 * 119.99857 * 179.97438 * 19 18 16 22 22 C 1.40159 * 119.85633 * 0.02562 * 21 19 18 23 23 C 1.36219 * 120.07823 * 179.97438 * 22 21 19 24 24 C 1.39575 * 120.43426 * 0.02562 * 23 22 21 25 25 S 1.76148 * 131.53040 * 179.97438 * 24 23 22 26 26 C 1.70627 * 90.85582 * 180.02562 * 25 24 23 27 27 N 1.27851 * 111.59131 * 359.97438 * 26 25 24 28 28 C 1.34747 * 117.83819 * 359.97438 * 27 26 25 29 29 C 1.38717 * 119.85436 * 179.72171 * 21 19 18 30 30 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47405 * 300.00228 * 1 2 3 32 32 H 1.09009 * 109.47143 * 60.00108 * 1 2 3 33 33 H 1.09001 * 110.36805 * 86.04304 * 5 3 2 34 34 H 1.08999 * 110.36920 * 323.72033 * 5 3 2 35 35 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.88094 * 118.13011 * 15 6 5 37 37 H 1.09003 * 109.88256 * 239.30018 * 15 6 5 38 38 H 0.96994 * 120.00057 * 88.77846 * 18 16 15 39 39 H 1.08003 * 119.96097 * 359.97438 * 22 21 19 40 40 H 1.08000 * 119.77906 * 180.02562 * 23 22 21 41 41 H 1.08003 * 124.20606 * 180.02562 * 26 25 24 42 42 H 1.07998 * 119.97881 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3829 2.0101 0.5461 5 6 2.2695 1.7978 -1.4457 6 7 3.3604 2.7814 -1.3194 7 6 3.6225 3.7996 -2.1968 8 1 4.4495 4.4700 -2.0146 9 6 2.8219 3.9735 -3.3173 10 7 1.8142 3.1565 -3.5394 11 14 3.1747 5.3671 -4.5101 12 1 4.1125 4.8945 -5.5601 13 1 1.9063 5.8105 -5.1424 14 1 3.7858 6.5042 -3.7760 15 6 4.1242 2.4842 -0.0988 16 6 3.4484 1.2749 0.5814 17 1 3.9555 0.3498 0.3073 18 7 3.4225 1.4379 2.0371 19 6 4.4338 0.9569 2.7871 20 8 5.3671 0.3873 2.2557 21 6 4.4080 1.1217 4.2542 22 6 3.3302 1.7785 4.8638 23 6 3.3016 1.9326 6.2169 24 6 4.3417 1.4403 7.0067 25 16 4.6028 1.4752 8.7484 26 6 6.0814 0.6426 8.5692 27 7 6.3279 0.3804 7.3424 28 6 5.4295 0.7794 6.4208 29 6 5.4476 0.6204 5.0238 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 1.3759 2.2724 -1.8509 34 1 2.5794 0.9669 -2.0795 35 1 1.2550 3.2778 -4.3226 36 1 5.1545 2.2390 -0.3567 37 1 4.1021 3.3439 0.5709 38 1 2.6777 1.8922 2.4611 39 1 2.5215 2.1628 4.2599 40 1 2.4685 2.4391 6.6815 41 1 6.7282 0.3702 9.3901 42 1 6.2730 0.1105 4.5494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082291533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:23 Heat of formation + Delta-G solvation = 20.877229 kcal Electronic energy + Delta-G solvation = -27311.641981 eV Core-core repulsion = 23384.787188 eV Total energy + Delta-G solvation = -3926.854793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.93034 -39.69966 -38.21965 -36.88997 -35.93520 -34.19248 -31.98944 -31.48603 -30.39650 -28.77991 -27.18642 -26.13666 -25.56893 -24.66459 -23.53971 -22.47236 -20.77687 -20.54802 -19.89129 -19.08138 -17.65857 -17.02539 -16.72547 -16.55464 -16.18413 -15.45360 -15.26885 -15.03727 -14.66730 -14.58555 -14.31562 -14.28473 -14.16965 -13.94716 -13.43044 -13.23069 -12.90379 -12.45016 -12.28851 -12.21577 -11.86924 -11.48830 -11.41803 -11.31797 -11.04276 -10.86288 -10.83444 -10.50101 -10.22530 -10.08879 -9.98680 -9.90862 -9.82047 -9.21825 -9.12129 -8.75904 -8.72565 -8.52029 -6.93282 -5.72477 -3.15617 -0.01825 0.43650 0.80827 1.26964 1.86713 2.74029 3.05402 3.37399 3.42511 3.44024 3.55885 3.65855 4.08524 4.16709 4.44746 4.53576 4.56990 4.73252 4.82763 5.03127 5.18748 5.39363 5.47123 5.48174 5.58396 5.62713 5.65568 5.67150 5.70838 5.81745 5.86269 5.94266 6.03197 6.14221 6.18404 6.40045 6.64441 6.83616 7.14567 7.22177 7.50984 7.57770 7.69815 7.75946 8.21955 8.26976 9.13102 9.73427 10.35551 11.31344 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.002280 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.376590 B =12276.322949 C =12908.479737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.054 3.946 4 H 0.066 0.934 5 C 0.139 3.861 6 N -0.600 5.600 7 C -0.222 4.222 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.136 3.864 17 H 0.106 0.894 18 N -0.707 5.707 19 C 0.559 3.441 20 O -0.529 6.529 21 C -0.115 4.115 22 C -0.069 4.069 23 C -0.077 4.077 24 C -0.164 4.164 25 S 0.100 5.900 26 C 0.065 3.935 27 N -0.456 5.456 28 C 0.068 3.932 29 C 0.003 3.997 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.027 0.973 35 H 0.253 0.747 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.397 0.603 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.206 0.794 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 -3.731 25.038 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.350 4.350 8 H 0.098 0.902 9 C -0.206 4.206 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.032 3.968 17 H 0.124 0.876 18 N -0.357 5.357 19 C 0.345 3.655 20 O -0.407 6.407 21 C -0.121 4.121 22 C -0.091 4.091 23 C -0.099 4.099 24 C -0.283 4.283 25 S 0.354 5.646 26 C -0.241 4.241 27 N -0.168 5.168 28 C -0.051 4.051 29 C -0.018 4.018 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.232 0.768 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.222 0.778 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.417 -4.158 25.231 25.575 hybrid contribution -0.248 0.959 -1.162 1.527 sum -0.665 -3.199 24.069 24.290 Atomic orbital electron populations 1.22701 0.81530 1.01937 1.00029 1.87850 1.19285 1.27619 1.95135 1.24025 0.92079 0.83833 1.00579 0.91578 1.22343 0.95403 0.91912 0.88986 1.44310 1.31690 1.33113 1.23703 1.19096 1.11064 1.04099 1.00777 0.90169 1.24803 0.97987 0.99346 0.98437 1.69741 1.19871 1.38647 1.28914 0.86029 0.77066 0.81219 0.80924 1.21497 1.21627 1.20640 1.21612 0.95225 0.93576 0.89293 1.22182 0.96668 1.00698 0.77276 0.87621 1.45881 1.23391 1.58673 1.07786 1.17981 0.82709 0.78947 0.85853 1.90813 1.34116 1.42195 1.73539 1.19809 0.96191 1.02242 0.93844 1.21027 0.97297 0.96469 0.94339 1.19972 0.96999 1.00121 0.92834 1.24089 1.01039 1.05963 0.97202 1.84043 1.20874 1.57837 1.01841 1.28130 0.99231 0.99607 0.97116 1.66210 1.29629 1.20399 1.00567 1.19097 0.90569 1.00876 0.94567 1.20782 0.97647 0.94473 0.88919 0.90317 0.94817 0.93379 0.86916 0.95517 0.93582 0.94690 0.95136 0.76789 0.84156 0.84421 0.77760 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.89 101.05 1.10 1.59 16 2 O -0.38 -6.80 10.52 -35.23 -0.37 -7.17 16 3 C 0.05 1.01 3.12 -24.58 -0.08 0.94 16 4 H 0.07 1.12 7.77 -51.93 -0.40 0.72 16 5 C 0.14 3.32 5.63 -2.53 -0.01 3.31 16 6 N -0.60 -15.17 3.39 -170.06 -0.58 -15.75 16 7 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 10 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 11 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.13 2.77 7.01 -3.06 -0.02 2.75 16 16 C 0.14 2.51 3.04 -66.09 -0.20 2.31 16 17 H 0.11 2.16 7.55 -51.93 -0.39 1.77 16 18 N -0.71 -10.32 5.07 -53.02 -0.27 -10.59 16 19 C 0.56 8.58 7.76 -12.41 -0.10 8.49 16 20 O -0.53 -10.13 15.94 5.30 0.08 -10.05 16 21 C -0.11 -1.41 5.86 -105.15 -0.62 -2.02 16 22 C -0.07 -0.64 9.47 -39.59 -0.37 -1.01 16 23 C -0.08 -0.65 9.99 -39.81 -0.40 -1.04 16 24 C -0.16 -1.60 6.56 -38.37 -0.25 -1.85 16 25 S 0.10 0.70 23.17 -107.50 -2.49 -1.79 16 26 C 0.06 0.49 12.09 51.11 0.62 1.10 16 27 N -0.46 -5.13 10.57 -13.02 -0.14 -5.26 16 28 C 0.07 0.81 6.99 -84.98 -0.59 0.22 16 29 C 0.00 0.04 9.65 -38.51 -0.37 -0.33 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.11 2.95 5.86 -51.93 -0.30 2.65 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 38 H 0.40 4.53 6.56 -40.82 -0.27 4.26 16 39 H 0.14 0.95 6.37 -52.48 -0.33 0.61 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.21 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.15 2.02 7.60 -52.49 -0.40 1.62 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -33.75 366.12 -9.28 -43.03 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.02 Total: 3.23 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.55 Total: 7.80 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.42 Total: -57.27 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.29 Total: -17.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.49 Total: -1.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.75 -9.28 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082291533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.906 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds