Wall clock time and date at job start Wed Apr 1 2020 04:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99615 * 2 1 4 4 H 1.08996 * 110.88821 * 32.42704 * 3 2 1 5 5 C 1.54907 * 111.00338 * 268.54180 * 3 2 1 6 6 N 1.47424 * 104.83241 * 204.88136 * 5 3 2 7 7 C 1.36943 * 125.64955 * 204.09232 * 6 5 3 8 8 H 1.08002 * 119.99788 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99622 * 0.30258 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48501 * 109.46896 * 89.99850 * 11 9 7 13 13 H 1.48499 * 109.47039 * 210.00011 * 11 9 7 14 14 H 1.48501 * 109.47275 * 329.99811 * 11 9 7 15 15 C 1.47024 * 108.70428 * 24.35838 * 6 5 3 16 16 C 1.54336 * 107.26414 * 358.58383 * 15 6 5 17 17 H 1.09001 * 110.51267 * 96.44857 * 16 15 6 18 18 N 1.46497 * 111.00488 * 219.60321 * 16 15 6 19 19 C 1.34783 * 119.99813 * 268.78501 * 18 16 15 20 20 O 1.21575 * 119.99872 * 359.97438 * 19 18 16 21 21 C 1.47657 * 119.99857 * 179.97438 * 19 18 16 22 22 C 1.40159 * 119.85633 * 0.02562 * 21 19 18 23 23 C 1.36219 * 120.07823 * 179.97438 * 22 21 19 24 24 C 1.39575 * 120.43426 * 0.02562 * 23 22 21 25 25 S 1.76148 * 131.53040 * 179.97438 * 24 23 22 26 26 C 1.70627 * 90.85582 * 180.02562 * 25 24 23 27 27 N 1.27851 * 111.59131 * 359.97438 * 26 25 24 28 28 C 1.34747 * 117.83819 * 359.97438 * 27 26 25 29 29 C 1.38717 * 119.85436 * 179.72171 * 21 19 18 30 30 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47405 * 300.00228 * 1 2 3 32 32 H 1.09009 * 109.47143 * 60.00108 * 1 2 3 33 33 H 1.09001 * 110.36805 * 86.04304 * 5 3 2 34 34 H 1.08999 * 110.36920 * 323.72033 * 5 3 2 35 35 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.88094 * 118.13011 * 15 6 5 37 37 H 1.09003 * 109.88256 * 239.30018 * 15 6 5 38 38 H 0.96994 * 120.00057 * 88.77846 * 18 16 15 39 39 H 1.08003 * 119.96097 * 359.97438 * 22 21 19 40 40 H 1.08000 * 119.77906 * 180.02562 * 23 22 21 41 41 H 1.08003 * 124.20606 * 180.02562 * 26 25 24 42 42 H 1.07998 * 119.97881 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3829 2.0101 0.5461 5 6 2.2695 1.7978 -1.4457 6 7 3.3604 2.7814 -1.3194 7 6 3.6225 3.7996 -2.1968 8 1 4.4495 4.4700 -2.0146 9 6 2.8219 3.9735 -3.3173 10 7 1.8142 3.1565 -3.5394 11 14 3.1747 5.3671 -4.5101 12 1 4.1125 4.8945 -5.5601 13 1 1.9063 5.8105 -5.1424 14 1 3.7858 6.5042 -3.7760 15 6 4.1242 2.4842 -0.0988 16 6 3.4484 1.2749 0.5814 17 1 3.9555 0.3498 0.3073 18 7 3.4225 1.4379 2.0371 19 6 4.4338 0.9569 2.7871 20 8 5.3671 0.3873 2.2557 21 6 4.4080 1.1217 4.2542 22 6 3.3302 1.7785 4.8638 23 6 3.3016 1.9326 6.2169 24 6 4.3417 1.4403 7.0067 25 16 4.6028 1.4752 8.7484 26 6 6.0814 0.6426 8.5692 27 7 6.3279 0.3804 7.3424 28 6 5.4295 0.7794 6.4208 29 6 5.4476 0.6204 5.0238 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 1.3759 2.2724 -1.8509 34 1 2.5794 0.9669 -2.0795 35 1 1.2550 3.2778 -4.3226 36 1 5.1545 2.2390 -0.3567 37 1 4.1021 3.3439 0.5709 38 1 2.6777 1.8922 2.4611 39 1 2.5215 2.1628 4.2599 40 1 2.4685 2.4391 6.6815 41 1 6.7282 0.3702 9.3901 42 1 6.2730 0.1105 4.5494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082291533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:22 Heat of formation + Delta-G solvation = -3.448015 kcal Electronic energy + Delta-G solvation = -27312.696803 eV Core-core repulsion = 23384.787188 eV Total energy + Delta-G solvation = -3927.909615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81616 -40.88701 -39.65454 -37.74539 -37.48854 -35.74902 -33.77155 -32.36902 -31.35418 -30.39854 -28.82972 -27.53648 -26.44001 -26.07008 -24.71812 -23.27797 -22.39852 -21.97804 -21.28872 -19.87689 -19.13480 -18.34987 -18.05355 -17.40025 -17.29046 -17.05965 -16.36899 -16.23775 -15.96366 -15.76896 -15.69601 -15.42647 -15.09753 -15.00283 -14.83827 -14.56180 -14.20470 -13.95758 -13.73302 -13.19584 -13.11551 -13.08035 -12.89635 -12.73804 -12.58569 -12.35137 -12.15703 -12.04222 -11.90147 -11.54600 -11.26178 -11.23991 -10.80145 -10.72193 -10.60083 -10.22398 -9.89219 -9.19810 -8.97417 -7.80827 -5.28068 -0.70826 -0.41546 0.20287 0.63625 1.17561 1.47659 1.49855 1.58287 1.72750 1.85284 2.45028 2.63759 2.73661 2.97089 3.30099 3.45301 3.51041 3.59708 3.82943 3.90967 3.97880 4.04606 4.06821 4.11993 4.35483 4.44967 4.46987 4.61925 4.64348 4.68132 4.83123 4.87368 4.90583 4.96274 4.98661 5.07830 5.27929 5.36015 5.44654 5.45530 5.68681 6.19058 6.31502 6.40251 6.50250 7.04277 7.07363 7.69074 8.31284 9.20563 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.002280 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.376590 B =12276.322949 C =12908.479737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.078 3.922 4 H 0.095 0.905 5 C 0.144 3.856 6 N -0.618 5.618 7 C -0.242 4.242 8 H 0.082 0.918 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.983 3.017 12 H -0.290 1.290 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.130 3.870 16 C 0.153 3.847 17 H 0.081 0.919 18 N -0.691 5.691 19 C 0.560 3.440 20 O -0.577 6.577 21 C -0.122 4.122 22 C -0.067 4.067 23 C -0.064 4.064 24 C -0.182 4.182 25 S 0.166 5.834 26 C 0.069 3.931 27 N -0.503 5.503 28 C 0.050 3.950 29 C -0.020 4.020 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.090 0.910 34 H -0.013 1.013 35 H 0.250 0.750 36 H 0.016 0.984 37 H 0.046 0.954 38 H 0.417 0.583 39 H 0.170 0.830 40 H 0.176 0.824 41 H 0.242 0.758 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 -2.339 28.530 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.018 3.982 4 H 0.112 0.888 5 C 0.018 3.982 6 N -0.346 5.346 7 C -0.371 4.371 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.596 5.596 11 Si 0.811 3.189 12 H -0.218 1.218 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.004 3.996 16 C 0.047 3.953 17 H 0.099 0.901 18 N -0.343 5.343 19 C 0.349 3.651 20 O -0.457 6.457 21 C -0.128 4.128 22 C -0.090 4.090 23 C -0.087 4.087 24 C -0.302 4.302 25 S 0.420 5.580 26 C -0.235 4.235 27 N -0.216 5.216 28 C -0.069 4.069 29 C -0.041 4.041 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.005 0.995 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.256 0.744 39 H 0.187 0.813 40 H 0.193 0.807 41 H 0.258 0.742 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.162 -2.755 28.787 28.999 hybrid contribution 0.314 0.476 -2.083 2.160 sum -1.848 -2.279 26.704 26.864 Atomic orbital electron populations 1.22979 0.79235 1.03857 1.00843 1.87845 1.21797 1.26813 1.95011 1.23620 0.92620 0.84900 0.97050 0.88759 1.22112 0.93895 0.90225 0.91962 1.44556 1.32659 1.32849 1.24531 1.19445 1.11229 1.04744 1.01646 0.89967 1.25637 0.97980 1.01762 1.00051 1.69975 1.20528 1.40002 1.29107 0.85014 0.76685 0.78686 0.78517 1.21753 1.21505 1.19253 1.21680 0.94152 0.95271 0.88508 1.21657 0.96034 0.98213 0.79418 0.90102 1.45579 1.24091 1.58722 1.05900 1.18480 0.81750 0.77684 0.87234 1.90789 1.35942 1.44267 1.74715 1.19527 0.97732 1.04134 0.91456 1.21274 0.96735 0.95749 0.95197 1.20399 0.97216 0.98704 0.92336 1.24522 1.00724 1.05422 0.99510 1.83836 1.19297 1.56195 0.98627 1.28851 0.99971 0.97779 0.96878 1.66238 1.30820 1.22683 1.01832 1.19144 0.91801 1.01728 0.94274 1.20673 0.97664 0.95747 0.90049 0.87984 0.91781 0.94689 0.89222 0.99499 0.94013 0.96604 0.93621 0.74435 0.81294 0.80707 0.74179 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.89 113.37 1.23 1.93 16 2 O -0.40 -13.90 10.52 -148.98 -1.57 -15.47 16 3 C 0.08 2.88 3.12 31.99 0.10 2.98 16 4 H 0.09 2.98 7.77 -2.39 -0.02 2.96 16 5 C 0.14 7.12 5.63 86.85 0.49 7.60 16 6 N -0.62 -32.14 3.39 -691.96 -2.35 -34.49 16 7 C -0.24 -13.55 10.27 84.03 0.86 -12.69 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 10 N -0.95 -55.25 10.09 21.65 0.22 -55.03 16 11 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.13 5.70 7.01 86.73 0.61 6.31 16 16 C 0.15 5.72 3.04 46.19 0.14 5.86 16 17 H 0.08 3.47 7.55 -2.39 -0.02 3.45 16 18 N -0.69 -19.60 5.07 -439.93 -2.23 -21.83 16 19 C 0.56 17.49 7.76 86.73 0.67 18.16 16 20 O -0.58 -23.41 15.94 -3.95 -0.06 -23.47 16 21 C -0.12 -2.98 5.86 -20.21 -0.12 -3.09 16 22 C -0.07 -1.06 9.47 22.27 0.21 -0.85 16 23 C -0.06 -0.85 9.99 22.12 0.22 -0.63 16 24 C -0.18 -3.10 6.56 23.05 0.15 -2.95 16 25 S 0.17 1.71 23.17 -56.49 -1.31 0.40 16 26 C 0.07 0.87 12.09 130.82 1.58 2.45 16 27 N -0.50 -10.97 10.57 -194.90 -2.06 -13.03 16 28 C 0.05 1.17 6.99 39.73 0.28 1.44 16 29 C -0.02 -0.52 9.65 22.96 0.22 -0.30 16 30 H 0.10 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 32 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.09 4.86 5.86 -2.39 -0.01 4.85 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 38 H 0.42 8.37 6.56 -92.71 -0.61 7.76 16 39 H 0.17 1.56 6.37 -2.91 -0.02 1.54 16 40 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.24 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.13 3.84 7.60 -2.91 -0.02 3.82 16 Total: -1.00 -78.59 366.12 0.25 -78.34 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.46 Total: 14.22 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 7.12 Total: 23.25 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -6.42 Total: -124.38 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.63 Total: -38.94 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.31 Total: 0.40 kcal Total: -78.59 0.25 -78.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082291533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.892 kcal (2) G-P(sol) polarization free energy of solvation -78.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds