Wall clock time and date at job start Wed Apr 1 2020 04:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99846 * 2 1 4 4 C 1.53003 * 109.47005 * 263.19036 * 3 2 1 5 5 H 1.09004 * 112.96615 * 311.51648 * 4 3 2 6 6 C 1.53947 * 113.76854 * 179.83934 * 4 3 2 7 7 C 1.53948 * 86.28808 * 222.09167 * 6 4 3 8 8 N 1.47577 * 86.11894 * 23.60561 * 7 6 4 9 9 C 1.36934 * 134.49336 * 155.35969 * 8 7 6 10 10 H 1.08004 * 119.99923 * 182.82711 * 9 8 7 11 11 C 1.38816 * 120.00271 * 2.82367 * 9 8 7 12 12 N 1.31612 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00104 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.46984 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46749 * 120.00751 * 13 11 9 16 16 H 1.48494 * 109.46966 * 240.00179 * 13 11 9 17 17 C 1.34773 * 120.00124 * 180.02562 * 2 1 3 18 18 O 1.21630 * 120.00314 * 185.08540 * 17 2 1 19 19 C 1.47271 * 119.99821 * 5.08248 * 17 2 1 20 20 C 1.35078 * 122.43018 * 174.68244 * 19 17 2 21 21 S 1.71006 * 109.14595 * 179.70778 * 20 19 17 22 22 C 1.75998 * 90.59158 * 0.33916 * 21 20 19 23 23 C 1.47869 * 125.32137 * 179.91489 * 22 21 20 24 24 C 1.46856 * 127.14084 * 359.84276 * 23 22 21 25 25 C 1.34304 * 106.00430 * 180.29280 * 24 23 22 26 26 O 1.34172 * 109.05697 * 359.76102 * 25 24 23 27 27 C 1.34005 * 110.79854 * 359.97438 * 26 25 24 28 28 N 1.29882 * 109.36135 * 359.65553 * 22 21 20 29 29 H 1.09000 * 109.47398 * 238.46243 * 1 2 3 30 30 H 1.09004 * 109.46936 * 358.46106 * 1 2 3 31 31 H 1.09003 * 109.47249 * 118.45374 * 1 2 3 32 32 H 1.08999 * 109.46795 * 23.18980 * 3 2 1 33 33 H 1.09000 * 109.46898 * 143.19531 * 3 2 1 34 34 H 1.09001 * 113.73809 * 336.43739 * 6 4 3 35 35 H 1.08999 * 113.74127 * 107.64049 * 6 4 3 36 36 H 1.09001 * 113.76763 * 137.90749 * 7 6 4 37 37 H 1.09004 * 113.76698 * 269.19113 * 7 6 4 38 38 H 0.97003 * 120.00472 * 179.97438 * 12 11 9 39 39 H 1.07998 * 125.42628 * 359.96096 * 20 19 17 40 40 H 1.07994 * 126.99666 * 0.04415 * 24 23 22 41 41 H 1.08000 * 125.46917 * 179.77541 * 25 24 23 42 42 H 1.07999 * 125.78682 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.6006 1.6249 -1.4324 5 1 3.0681 0.7945 -1.9616 6 6 3.3766 2.9495 -1.5474 7 6 2.5147 3.2306 -2.7917 8 7 1.5353 2.2985 -2.2002 9 6 0.1817 2.1273 -2.3168 10 1 -0.3207 1.3766 -1.7247 11 6 -0.5448 2.9185 -3.1960 12 7 0.0675 3.8330 -3.9179 13 14 -2.3912 2.6845 -3.3556 14 1 -2.8334 1.6001 -2.4427 15 1 -3.0833 3.9479 -2.9949 16 1 -2.7247 2.3199 -4.7560 17 6 2.1389 -1.1672 -0.0005 18 8 3.3516 -1.1693 0.0928 19 6 1.4069 -2.4400 -0.1141 20 6 2.0361 -3.6301 -0.2252 21 16 0.8679 -4.8749 -0.3263 22 6 -0.4297 -3.6906 -0.2206 23 6 -1.8751 -4.0019 -0.2432 24 6 -2.4948 -5.3283 -0.3587 25 6 -3.8215 -5.1199 -0.3422 26 8 -4.0568 -3.8043 -0.2233 27 6 -2.9070 -3.1192 -0.1586 28 7 0.0806 -2.5010 -0.1143 29 1 -0.3634 -0.5375 0.8759 30 1 -0.3633 1.0273 0.0276 31 1 -0.3634 -0.4896 -0.9035 32 1 1.5610 2.0557 0.4047 33 1 3.0917 1.1720 0.6157 34 1 3.1940 3.6381 -0.7224 35 1 4.4365 2.8196 -1.7659 36 1 2.1589 4.2588 -2.8565 37 1 2.9568 2.8740 -3.7220 38 1 -0.4400 4.3857 -4.5326 39 1 3.1064 -3.7731 -0.2428 40 1 -1.9871 -6.2776 -0.4440 41 1 -4.5774 -5.8879 -0.4130 42 1 -2.8150 -2.0475 -0.0607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085878557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:26 Heat of formation + Delta-G solvation = 104.525687 kcal Electronic energy + Delta-G solvation = -28046.992734 eV Core-core repulsion = 24123.765210 eV Total energy + Delta-G solvation = -3923.227524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.67808 -40.46906 -38.65969 -37.55463 -34.97380 -33.68870 -32.18220 -30.93214 -29.29830 -28.77053 -27.77682 -26.28929 -25.58824 -23.54183 -23.25970 -21.97724 -21.76625 -20.06301 -19.12326 -18.99778 -18.27257 -17.66861 -16.80819 -16.28470 -16.18283 -15.77744 -15.39130 -15.29084 -14.88024 -14.44334 -14.21152 -13.87039 -13.52596 -13.41723 -13.23289 -13.10467 -12.85230 -12.52029 -12.48184 -12.18698 -11.84651 -11.39672 -11.31055 -11.06260 -10.93741 -10.69233 -10.67193 -10.45448 -10.05050 -9.92995 -9.71743 -9.62850 -9.49413 -9.29805 -9.23640 -8.73950 -8.44604 -8.07744 -6.79250 -5.70795 -3.01191 0.21212 1.03867 1.45375 1.47300 1.78934 2.63167 2.75689 3.35363 3.39296 3.42177 3.46882 3.57375 3.74006 4.48012 4.50036 4.54727 4.81587 5.02931 5.16435 5.19924 5.22415 5.41424 5.48749 5.69012 5.71754 5.80549 5.82689 5.92094 5.97341 6.00968 6.13426 6.15588 6.30078 6.50229 6.52738 6.68869 6.75839 6.78039 7.02485 7.33505 7.37515 7.50052 7.65688 7.77079 8.05407 8.42996 9.11046 9.78133 10.70326 11.47114 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.004083 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.278430 B = 6855.991981 C = 9216.325931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.581 5.581 3 C 0.118 3.882 4 C 0.128 3.872 5 H 0.045 0.955 6 C -0.159 4.159 7 C 0.162 3.838 8 N -0.602 5.602 9 C -0.222 4.222 10 H 0.090 0.910 11 C -0.011 4.011 12 N -0.921 5.921 13 Si 0.901 3.099 14 H -0.278 1.278 15 H -0.291 1.291 16 H -0.292 1.292 17 C 0.585 3.415 18 O -0.545 6.545 19 C 0.027 3.973 20 C -0.221 4.221 21 S 0.166 5.834 22 C 0.127 3.873 23 C -0.138 4.138 24 C -0.198 4.198 25 C -0.029 4.029 26 O -0.175 6.175 27 C 0.041 3.959 28 N -0.431 5.431 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.251 0.749 39 H 0.190 0.810 40 H 0.156 0.844 41 H 0.208 0.792 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 -18.653 9.981 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.310 5.310 3 C -0.005 4.005 4 C 0.020 3.980 5 H 0.062 0.938 6 C -0.198 4.198 7 C 0.037 3.963 8 N -0.328 5.328 9 C -0.349 4.349 10 H 0.107 0.893 11 C -0.207 4.207 12 N -0.568 5.568 13 Si 0.732 3.268 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.220 1.220 17 C 0.370 3.630 18 O -0.423 6.423 19 C -0.108 4.108 20 C -0.363 4.363 21 S 0.424 5.576 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.219 4.219 25 C -0.096 4.096 26 O -0.070 6.070 27 C -0.033 4.033 28 N -0.146 5.146 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.207 0.793 40 H 0.173 0.827 41 H 0.224 0.776 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.652 -19.066 9.872 21.779 hybrid contribution -0.318 0.461 -0.495 0.748 sum -3.970 -18.606 9.377 21.210 Atomic orbital electron populations 1.22077 0.78231 1.02526 1.01883 1.47596 1.07999 1.05403 1.70017 1.22027 0.96470 0.83424 0.98578 1.22597 0.89663 0.94397 0.91313 0.93779 1.23781 0.97383 0.97505 1.01121 1.22118 0.86276 0.96382 0.91554 1.46190 1.01224 1.35099 1.50316 1.19388 0.80743 1.15908 1.18905 0.89267 1.24784 0.97677 0.99274 0.98962 1.69838 1.33976 1.24201 1.28833 0.86199 0.85722 0.77330 0.77508 1.20366 1.21828 1.21967 1.17111 0.86156 0.82284 0.77493 1.90770 1.12893 1.86909 1.51759 1.20213 0.88110 0.95407 1.07093 1.26425 1.06623 0.95647 1.07562 1.83661 0.96500 1.11235 1.66188 1.24928 0.96023 0.90167 1.03778 1.19022 0.88446 0.93738 1.13063 1.22741 0.93722 0.97005 1.08396 1.23896 0.97260 0.83093 1.05330 1.83944 1.33535 1.18904 1.70629 1.24451 0.81088 0.98170 0.99563 1.67502 1.10121 1.21860 1.15162 0.92483 0.90091 0.91234 0.89563 0.90643 0.90711 0.92982 0.91230 0.95836 0.93904 0.79303 0.82676 0.77562 0.76598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 7.31 59.85 0.44 2.07 16 2 N -0.58 -10.78 2.89 -182.90 -0.53 -11.31 16 3 C 0.12 2.23 5.25 -4.04 -0.02 2.20 16 4 C 0.13 2.76 4.49 -66.86 -0.30 2.46 16 5 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.16 -3.13 7.86 -25.80 -0.20 -3.33 16 7 C 0.16 3.92 7.44 -2.98 -0.02 3.90 16 8 N -0.60 -15.30 3.57 -170.73 -0.61 -15.91 16 9 C -0.22 -5.98 10.35 -15.06 -0.16 -6.14 16 10 H 0.09 2.24 3.94 -52.48 -0.21 2.04 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 12 N -0.92 -27.41 11.45 55.49 0.64 -26.77 16 13 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 C 0.58 10.94 7.58 -12.59 -0.10 10.85 16 18 O -0.54 -11.17 16.32 5.25 0.09 -11.09 16 19 C 0.03 0.44 6.51 -84.91 -0.55 -0.11 16 20 C -0.22 -2.94 10.56 29.61 0.31 -2.63 16 21 S 0.17 1.73 23.07 -107.50 -2.48 -0.75 16 22 C 0.13 1.61 7.46 -14.44 -0.11 1.51 16 23 C -0.14 -1.52 6.32 -103.25 -0.65 -2.17 16 24 C -0.20 -1.65 11.04 -37.48 -0.41 -2.07 16 25 C -0.03 -0.21 12.04 29.34 0.35 0.14 16 26 O -0.18 -1.69 10.54 6.86 0.07 -1.62 16 27 C 0.04 0.43 12.05 29.95 0.36 0.79 16 28 N -0.43 -6.47 6.66 -8.11 -0.05 -6.52 16 29 H 0.06 0.86 7.22 -51.93 -0.38 0.48 16 30 H 0.08 1.45 6.40 -51.93 -0.33 1.11 16 31 H 0.07 1.28 6.68 -51.93 -0.35 0.94 16 32 H 0.09 1.60 7.77 -51.93 -0.40 1.20 16 33 H 0.08 1.34 7.57 -51.93 -0.39 0.95 16 34 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.82 7.29 -51.93 -0.38 1.44 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.19 2.29 8.00 -52.49 -0.42 1.87 16 40 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.22 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -33.97 367.03 -8.48 -42.45 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.95 Total: 2.11 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.16 Total: 7.06 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.56 Total: -60.51 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.16 Total: -12.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.48 Total: -0.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.97 -8.48 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085878557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.977 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds