Wall clock time and date at job start Wed Apr 1 2020 04:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99846 * 2 1 4 4 C 1.53003 * 109.47005 * 263.19036 * 3 2 1 5 5 H 1.09004 * 112.96615 * 311.51648 * 4 3 2 6 6 C 1.53947 * 113.76854 * 179.83934 * 4 3 2 7 7 C 1.53948 * 86.28808 * 222.09167 * 6 4 3 8 8 N 1.47577 * 86.11894 * 23.60561 * 7 6 4 9 9 C 1.36934 * 134.49336 * 155.35969 * 8 7 6 10 10 H 1.08004 * 119.99923 * 182.82711 * 9 8 7 11 11 C 1.38816 * 120.00271 * 2.82367 * 9 8 7 12 12 N 1.31612 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00104 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.46984 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46749 * 120.00751 * 13 11 9 16 16 H 1.48494 * 109.46966 * 240.00179 * 13 11 9 17 17 C 1.34773 * 120.00124 * 180.02562 * 2 1 3 18 18 O 1.21630 * 120.00314 * 185.08540 * 17 2 1 19 19 C 1.47271 * 119.99821 * 5.08248 * 17 2 1 20 20 C 1.35078 * 122.43018 * 174.68244 * 19 17 2 21 21 S 1.71006 * 109.14595 * 179.70778 * 20 19 17 22 22 C 1.75998 * 90.59158 * 0.33916 * 21 20 19 23 23 C 1.47869 * 125.32137 * 179.91489 * 22 21 20 24 24 C 1.46856 * 127.14084 * 359.84276 * 23 22 21 25 25 C 1.34304 * 106.00430 * 180.29280 * 24 23 22 26 26 O 1.34172 * 109.05697 * 359.76102 * 25 24 23 27 27 C 1.34005 * 110.79854 * 359.97438 * 26 25 24 28 28 N 1.29882 * 109.36135 * 359.65553 * 22 21 20 29 29 H 1.09000 * 109.47398 * 238.46243 * 1 2 3 30 30 H 1.09004 * 109.46936 * 358.46106 * 1 2 3 31 31 H 1.09003 * 109.47249 * 118.45374 * 1 2 3 32 32 H 1.08999 * 109.46795 * 23.18980 * 3 2 1 33 33 H 1.09000 * 109.46898 * 143.19531 * 3 2 1 34 34 H 1.09001 * 113.73809 * 336.43739 * 6 4 3 35 35 H 1.08999 * 113.74127 * 107.64049 * 6 4 3 36 36 H 1.09001 * 113.76763 * 137.90749 * 7 6 4 37 37 H 1.09004 * 113.76698 * 269.19113 * 7 6 4 38 38 H 0.97003 * 120.00472 * 179.97438 * 12 11 9 39 39 H 1.07998 * 125.42628 * 359.96096 * 20 19 17 40 40 H 1.07994 * 126.99666 * 0.04415 * 24 23 22 41 41 H 1.08000 * 125.46917 * 179.77541 * 25 24 23 42 42 H 1.07999 * 125.78682 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.6006 1.6249 -1.4324 5 1 3.0681 0.7945 -1.9616 6 6 3.3766 2.9495 -1.5474 7 6 2.5147 3.2306 -2.7917 8 7 1.5353 2.2985 -2.2002 9 6 0.1817 2.1273 -2.3168 10 1 -0.3207 1.3766 -1.7247 11 6 -0.5448 2.9185 -3.1960 12 7 0.0675 3.8330 -3.9179 13 14 -2.3912 2.6845 -3.3556 14 1 -2.8334 1.6001 -2.4427 15 1 -3.0833 3.9479 -2.9949 16 1 -2.7247 2.3199 -4.7560 17 6 2.1389 -1.1672 -0.0005 18 8 3.3516 -1.1693 0.0928 19 6 1.4069 -2.4400 -0.1141 20 6 2.0361 -3.6301 -0.2252 21 16 0.8679 -4.8749 -0.3263 22 6 -0.4297 -3.6906 -0.2206 23 6 -1.8751 -4.0019 -0.2432 24 6 -2.4948 -5.3283 -0.3587 25 6 -3.8215 -5.1199 -0.3422 26 8 -4.0568 -3.8043 -0.2233 27 6 -2.9070 -3.1192 -0.1586 28 7 0.0806 -2.5010 -0.1143 29 1 -0.3634 -0.5375 0.8759 30 1 -0.3633 1.0273 0.0276 31 1 -0.3634 -0.4896 -0.9035 32 1 1.5610 2.0557 0.4047 33 1 3.0917 1.1720 0.6157 34 1 3.1940 3.6381 -0.7224 35 1 4.4365 2.8196 -1.7659 36 1 2.1589 4.2588 -2.8565 37 1 2.9568 2.8740 -3.7220 38 1 -0.4400 4.3857 -4.5326 39 1 3.1064 -3.7731 -0.2428 40 1 -1.9871 -6.2776 -0.4440 41 1 -4.5774 -5.8879 -0.4130 42 1 -2.8150 -2.0475 -0.0607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085878557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:25 Heat of formation + Delta-G solvation = 83.253004 kcal Electronic energy + Delta-G solvation = -28047.915187 eV Core-core repulsion = 24123.765210 eV Total energy + Delta-G solvation = -3924.149977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.35393 -41.70700 -40.08730 -39.16934 -36.46546 -34.47078 -34.23930 -31.76785 -30.43098 -30.08452 -29.67877 -27.66279 -26.74763 -25.24957 -24.85494 -23.16692 -22.61756 -21.04492 -20.87402 -20.07068 -19.41735 -18.69425 -18.57019 -17.49205 -17.13683 -17.01847 -16.75802 -16.71455 -16.21620 -15.84300 -15.63635 -15.26359 -14.85624 -14.73066 -14.55141 -14.21212 -13.93371 -13.81435 -13.64740 -13.27571 -13.18370 -13.08009 -12.95392 -12.89685 -12.70318 -12.50937 -12.20147 -11.81176 -11.55696 -11.47036 -11.26481 -11.19478 -10.82032 -10.68869 -10.57383 -10.01481 -9.66282 -9.22427 -8.85238 -7.83403 -5.15138 -0.75457 0.12330 0.46261 0.51134 1.05810 1.44904 1.46218 1.55524 1.72422 2.02425 2.12488 2.32467 2.49950 2.78028 3.33497 3.43959 3.58118 3.83907 3.93827 3.97206 4.12758 4.18482 4.25579 4.31022 4.42143 4.49172 4.59646 4.67132 4.73540 4.77393 4.85258 4.89257 4.99113 5.03245 5.07131 5.14011 5.35353 5.40522 5.50187 5.63587 5.71621 5.98559 6.08429 6.28466 6.41938 6.98842 7.02373 7.69303 8.65290 9.35043 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.004083 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.278430 B = 6855.991981 C = 9216.325931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.589 5.589 3 C 0.126 3.874 4 C 0.130 3.870 5 H 0.024 0.976 6 C -0.130 4.130 7 C 0.154 3.846 8 N -0.623 5.623 9 C -0.219 4.219 10 H 0.104 0.896 11 C -0.075 4.075 12 N -0.959 5.959 13 Si 0.962 3.038 14 H -0.253 1.253 15 H -0.294 1.294 16 H -0.303 1.303 17 C 0.580 3.420 18 O -0.571 6.571 19 C -0.004 4.004 20 C -0.229 4.229 21 S 0.257 5.743 22 C 0.111 3.889 23 C -0.159 4.159 24 C -0.208 4.208 25 C -0.018 4.018 26 O -0.185 6.185 27 C 0.028 3.972 28 N -0.454 5.454 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.006 0.994 38 H 0.243 0.757 39 H 0.197 0.803 40 H 0.178 0.822 41 H 0.249 0.751 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 -21.567 11.366 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.318 5.318 3 C 0.003 3.997 4 C 0.022 3.978 5 H 0.042 0.958 6 C -0.169 4.169 7 C 0.028 3.972 8 N -0.350 5.350 9 C -0.348 4.348 10 H 0.122 0.878 11 C -0.267 4.267 12 N -0.609 5.609 13 Si 0.791 3.209 14 H -0.177 1.177 15 H -0.221 1.221 16 H -0.231 1.231 17 C 0.366 3.634 18 O -0.452 6.452 19 C -0.140 4.140 20 C -0.372 4.372 21 S 0.517 5.483 22 C -0.164 4.164 23 C -0.164 4.164 24 C -0.228 4.228 25 C -0.084 4.084 26 O -0.080 6.080 27 C -0.045 4.045 28 N -0.170 5.170 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.052 0.948 39 H 0.214 0.786 40 H 0.195 0.805 41 H 0.265 0.735 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.696 -22.025 11.292 25.193 hybrid contribution 0.019 1.181 -0.932 1.504 sum -4.676 -20.844 10.361 23.742 Atomic orbital electron populations 1.21958 0.77521 1.01819 1.02125 1.47696 1.08487 1.05414 1.70163 1.21856 0.97233 0.83959 0.96650 1.22649 0.88566 0.94441 0.92095 0.95811 1.23576 0.98133 0.96213 0.98940 1.22067 0.87374 0.94762 0.92950 1.46576 1.01523 1.35997 1.50864 1.19903 0.81899 1.15075 1.17892 0.87813 1.25592 1.01910 0.99685 0.99473 1.70036 1.35288 1.25578 1.30030 0.85227 0.80842 0.77716 0.77117 1.17660 1.22099 1.23073 1.17529 0.86100 0.83156 0.76576 1.90731 1.13967 1.87498 1.53014 1.19955 0.88903 0.94903 1.10216 1.26725 1.07989 0.96313 1.06172 1.83287 0.93277 1.07982 1.63725 1.25282 0.97469 0.90590 1.03086 1.19273 0.87756 0.95385 1.13968 1.23033 0.94129 0.96693 1.08908 1.24746 0.98050 0.82623 1.02984 1.83955 1.33244 1.20137 1.70637 1.24545 0.81499 0.98525 0.99975 1.67418 1.09632 1.23528 1.16460 0.90466 0.91053 0.92694 0.89199 0.89279 0.88853 0.90133 0.93798 0.97583 0.94797 0.78582 0.80498 0.73531 0.76660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.67 7.31 127.77 0.93 4.61 16 2 N -0.59 -21.73 2.89 -850.82 -2.46 -24.19 16 3 C 0.13 4.68 5.25 86.38 0.45 5.13 16 4 C 0.13 5.56 4.49 45.09 0.20 5.76 16 5 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 6 C -0.13 -4.99 7.86 31.25 0.25 -4.75 16 7 C 0.15 7.64 7.44 86.48 0.64 8.28 16 8 N -0.62 -32.14 3.57 -694.06 -2.48 -34.62 16 9 C -0.22 -11.96 10.35 84.03 0.87 -11.09 16 10 H 0.10 5.22 3.94 -2.91 -0.01 5.21 16 11 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 12 N -0.96 -58.99 11.45 21.65 0.25 -58.74 16 13 Si 0.96 45.49 29.55 68.60 2.03 47.52 16 14 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 16 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 17 C 0.58 21.69 7.58 86.62 0.66 22.35 16 18 O -0.57 -23.46 16.32 -4.13 -0.07 -23.53 16 19 C 0.00 -0.13 6.51 40.65 0.26 0.13 16 20 C -0.23 -5.81 10.56 67.09 0.71 -5.10 16 21 S 0.26 4.70 23.07 -56.49 -1.30 3.40 16 22 C 0.11 2.65 7.46 87.53 0.65 3.31 16 23 C -0.16 -3.23 6.32 -18.98 -0.12 -3.35 16 24 C -0.21 -2.82 11.04 23.63 0.26 -2.56 16 25 C -0.02 -0.21 12.04 66.92 0.81 0.60 16 26 O -0.18 -3.20 10.54 1.62 0.02 -3.18 16 27 C 0.03 0.56 12.05 67.31 0.81 1.38 16 28 N -0.45 -13.33 6.66 -179.56 -1.20 -14.53 16 29 H 0.08 2.28 7.22 -2.39 -0.02 2.27 16 30 H 0.07 2.52 6.40 -2.39 -0.02 2.50 16 31 H 0.05 2.03 6.68 -2.39 -0.02 2.01 16 32 H 0.09 3.26 7.77 -2.39 -0.02 3.24 16 33 H 0.09 3.07 7.57 -2.39 -0.02 3.05 16 34 H 0.09 3.27 8.10 -2.39 -0.02 3.25 16 35 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.04 2.38 7.29 -2.39 -0.02 2.37 16 37 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.24 14.64 8.31 -92.71 -0.77 13.86 16 39 H 0.20 4.53 8.00 -2.91 -0.02 4.50 16 40 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.25 0.41 8.06 -2.91 -0.02 0.39 16 42 H 0.22 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -75.74 367.03 3.71 -72.04 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.06 Total: 14.95 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 7.86 Total: 20.89 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -5.89 Total: -132.09 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -1.30 Total: 3.40 kcal Total: -75.74 3.71 -72.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085878557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.289 kcal (2) G-P(sol) polarization free energy of solvation -75.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds