Wall clock time and date at job start Wed Apr 1 2020 04:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00309 * 2 1 4 4 C 1.53002 * 109.47268 * 263.53774 * 3 2 1 5 5 H 1.08996 * 112.96640 * 309.03030 * 4 3 2 6 6 C 1.53947 * 113.77100 * 177.34808 * 4 3 2 7 7 C 1.53943 * 86.29139 * 222.09428 * 6 4 3 8 8 N 1.47583 * 86.11772 * 23.60849 * 7 6 4 9 9 C 1.36932 * 134.49016 * 155.35755 * 8 7 6 10 10 H 1.07997 * 120.00121 * 153.07006 * 9 8 7 11 11 C 1.38815 * 120.00055 * 333.06887 * 9 8 7 12 12 N 1.31623 * 119.99728 * 167.00222 * 11 9 8 13 13 Si 1.86800 * 120.00247 * 347.00090 * 11 9 8 14 14 H 1.48505 * 109.46869 * 86.23985 * 13 11 9 15 15 H 1.48492 * 109.47224 * 206.24185 * 13 11 9 16 16 H 1.48501 * 109.46993 * 326.24680 * 13 11 9 17 17 C 1.34774 * 120.00117 * 180.02562 * 2 1 3 18 18 O 1.21732 * 120.00371 * 185.36013 * 17 2 1 19 19 C 1.46422 * 119.99815 * 5.36060 * 17 2 1 20 20 C 1.36816 * 126.00185 * 174.78692 * 19 17 2 21 21 N 1.30354 * 115.31408 * 180.02562 * 20 19 17 22 22 C 1.30926 * 117.32412 * 359.97438 * 21 20 19 23 23 C 1.46855 * 125.29178 * 180.02562 * 22 21 20 24 24 C 1.36421 * 125.97437 * 359.97438 * 23 22 21 25 25 C 1.40614 * 106.71369 * 179.97438 * 24 23 22 26 26 C 1.34954 * 107.09709 * 0.02562 * 25 24 23 27 27 O 1.34168 * 108.73812 * 359.75528 * 26 25 24 28 28 S 1.76128 * 109.41527 * 0.02562 * 22 21 20 29 29 H 1.08998 * 109.47065 * 236.90473 * 1 2 3 30 30 H 1.09001 * 109.47113 * 356.89525 * 1 2 3 31 31 H 1.08994 * 109.47384 * 116.89672 * 1 2 3 32 32 H 1.09004 * 109.47090 * 23.53930 * 3 2 1 33 33 H 1.09000 * 109.47717 * 143.53773 * 3 2 1 34 34 H 1.08996 * 113.73973 * 336.44564 * 6 4 3 35 35 H 1.09004 * 113.73585 * 107.64009 * 6 4 3 36 36 H 1.08995 * 113.76448 * 137.91058 * 7 6 4 37 37 H 1.09003 * 113.76929 * 269.19413 * 7 6 4 38 38 H 0.97007 * 119.99713 * 179.97438 * 12 11 9 39 39 H 1.07999 * 122.34356 * 0.05899 * 20 19 17 40 40 H 1.07995 * 126.64323 * 359.94618 * 24 23 22 41 41 H 1.08004 * 126.45112 * 180.02562 * 25 24 23 42 42 H 1.07990 * 125.62927 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5932 1.6292 -1.4333 5 1 3.0965 0.8142 -1.9533 6 6 3.3153 2.9832 -1.5558 7 6 2.4491 3.2189 -2.8064 8 7 1.5052 2.2526 -2.2117 9 6 0.1603 2.0258 -2.3333 10 1 -0.2389 1.0380 -2.1565 11 6 -0.6900 3.0655 -2.6840 12 7 -1.9279 2.8082 -3.0500 13 14 -0.0776 4.8296 -2.6364 14 1 0.5827 5.1592 -3.9251 15 1 -1.2253 5.7464 -2.4195 16 1 0.8971 4.9854 -1.5269 17 6 2.1388 -1.1672 -0.0005 18 8 3.3522 -1.1696 0.0980 19 6 1.4115 -2.4324 -0.1196 20 6 1.9727 -3.6749 -0.2338 21 7 1.1266 -4.6621 -0.3278 22 6 -0.1483 -4.3653 -0.3028 23 6 -1.2472 -5.3352 -0.3952 24 6 -1.1144 -6.6871 -0.5210 25 6 -2.4154 -7.2182 -0.5722 26 6 -3.2719 -6.1797 -0.4771 27 8 -2.5636 -5.0456 -0.3654 28 16 -0.3406 -2.6220 -0.1412 29 1 -0.3633 -0.5611 0.8609 30 1 -0.3633 1.0262 0.0557 31 1 -0.3634 -0.4649 -0.9164 32 1 1.5633 2.0545 0.4104 33 1 3.0950 1.1701 0.6107 34 1 3.1008 3.6705 -0.7375 35 1 4.3808 2.8947 -1.7682 36 1 2.0523 4.2313 -2.8815 37 1 2.9100 2.8730 -3.7316 38 1 -2.5222 3.5348 -3.2946 39 1 3.0418 -3.8273 -0.2448 40 1 -0.1893 -7.2419 -0.5720 41 1 -2.6794 -8.2609 -0.6694 42 1 -4.3495 -6.2501 -0.4856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085937917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:00 Heat of formation + Delta-G solvation = 85.672355 kcal Electronic energy + Delta-G solvation = -27687.559698 eV Core-core repulsion = 23763.514632 eV Total energy + Delta-G solvation = -3924.045066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.59982 -41.36489 -40.40714 -39.55149 -36.57616 -34.42015 -34.19822 -32.88864 -31.10834 -30.31716 -29.38686 -27.87131 -26.63084 -25.19244 -24.67680 -23.22967 -22.51202 -21.89418 -20.80221 -20.37549 -19.34937 -18.97014 -18.39308 -17.61025 -17.47358 -17.30156 -17.09110 -16.74143 -16.34011 -15.96520 -15.45074 -15.34633 -15.10161 -14.84717 -14.73281 -14.34265 -14.20770 -13.96974 -13.89269 -13.69073 -13.50189 -13.15478 -12.97422 -12.78806 -12.64916 -12.61253 -12.13396 -12.06104 -11.60135 -11.34489 -11.24401 -11.21993 -10.83087 -10.79049 -10.69729 -10.48346 -9.80621 -9.07688 -8.92324 -8.10851 -5.44835 -1.26083 -0.02616 0.39385 0.53729 1.33953 1.35909 1.40822 1.51024 1.52254 1.70855 1.84705 2.08039 2.47269 2.93268 3.20156 3.24454 3.45072 3.70857 3.78184 3.98371 4.02625 4.05819 4.14521 4.15770 4.28587 4.36875 4.47389 4.60585 4.61433 4.63462 4.76348 4.83826 4.86546 4.92935 4.94583 4.98195 4.98889 5.31787 5.45606 5.46893 5.60020 5.92492 6.14912 6.24776 6.39422 6.60536 6.88650 7.52210 8.37942 9.08819 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003164 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.192363 B = 8847.006491 C =10351.385992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.594 5.594 3 C 0.124 3.876 4 C 0.130 3.870 5 H 0.045 0.955 6 C -0.121 4.121 7 C 0.086 3.914 8 N -0.640 5.640 9 C -0.213 4.213 10 H 0.071 0.929 11 C -0.030 4.030 12 N -0.958 5.958 13 Si 0.945 3.055 14 H -0.291 1.291 15 H -0.314 1.314 16 H -0.251 1.251 17 C 0.592 3.408 18 O -0.558 6.558 19 C -0.312 4.312 20 C 0.129 3.871 21 N -0.478 5.478 22 C 0.114 3.886 23 C -0.013 4.013 24 C -0.123 4.123 25 C -0.225 4.225 26 C 0.006 3.994 27 O -0.184 6.184 28 S 0.217 5.783 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.037 0.963 37 H 0.048 0.952 38 H 0.259 0.741 39 H 0.202 0.798 40 H 0.165 0.835 41 H 0.188 0.812 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -15.667 9.029 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.323 5.323 3 C 0.002 3.998 4 C 0.024 3.976 5 H 0.062 0.938 6 C -0.160 4.160 7 C -0.038 4.038 8 N -0.369 5.369 9 C -0.341 4.341 10 H 0.089 0.911 11 C -0.224 4.224 12 N -0.606 5.606 13 Si 0.776 3.224 14 H -0.219 1.219 15 H -0.243 1.243 16 H -0.175 1.175 17 C 0.380 3.620 18 O -0.440 6.440 19 C -0.437 4.437 20 C -0.032 4.032 21 N -0.193 5.193 22 C -0.154 4.154 23 C -0.065 4.065 24 C -0.148 4.148 25 C -0.244 4.244 26 C -0.064 4.064 27 O -0.080 6.080 28 S 0.479 5.521 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.219 0.781 40 H 0.182 0.818 41 H 0.205 0.795 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.170 -15.089 9.086 17.614 hybrid contribution 0.658 0.681 -0.754 1.210 sum 0.828 -14.408 8.332 16.664 Atomic orbital electron populations 1.21981 0.78795 1.04903 1.01057 1.47630 1.07505 1.05969 1.71208 1.21911 0.97404 0.83467 0.97066 1.22775 0.87807 0.95397 0.91614 0.93781 1.23451 0.99067 0.95897 0.97563 1.23020 0.90427 0.93704 0.96689 1.46557 1.02096 1.39437 1.48804 1.18698 0.80107 0.94594 1.40654 0.91110 1.25606 0.95079 1.01090 1.00667 1.69884 1.07537 1.32603 1.50537 0.85858 0.76062 0.81838 0.78668 1.21859 1.24272 1.17519 1.16805 0.86293 0.82313 0.76600 1.90778 1.13438 1.87210 1.52534 1.25907 0.97151 0.99403 1.21205 1.22382 1.01580 0.84335 0.94878 1.66451 0.99641 1.35000 1.18217 1.25083 0.92300 0.96433 1.01539 1.18678 0.80774 0.92319 1.14769 1.22281 1.00805 0.91552 1.00179 1.22251 0.90989 1.02420 1.08697 1.25363 0.99733 0.81133 1.00165 1.84075 1.15893 1.36642 1.71360 1.85722 1.01711 1.00435 1.64201 0.90208 0.88118 0.92462 0.89060 0.88488 0.88816 0.88608 0.94520 0.93376 0.93163 0.78145 0.81764 0.79471 0.72951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.57 7.01 127.77 0.90 3.46 16 2 N -0.59 -20.43 2.89 -851.80 -2.46 -22.90 16 3 C 0.12 4.13 5.26 86.38 0.45 4.59 16 4 C 0.13 4.83 4.49 45.09 0.20 5.03 16 5 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 6 C -0.12 -3.79 7.86 31.25 0.25 -3.54 16 7 C 0.09 3.39 7.55 86.48 0.65 4.04 16 8 N -0.64 -28.90 3.19 -694.11 -2.21 -31.11 16 9 C -0.21 -11.21 9.64 84.04 0.81 -10.40 16 10 H 0.07 3.96 5.61 -2.91 -0.02 3.94 16 11 C -0.03 -1.67 5.50 84.86 0.47 -1.20 16 12 N -0.96 -57.58 13.97 21.65 0.30 -57.28 16 13 Si 0.94 45.24 24.77 68.60 1.70 46.93 16 14 H -0.29 -13.89 7.03 99.48 0.70 -13.20 16 15 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 16 H -0.25 -11.01 6.81 99.48 0.68 -10.34 16 17 C 0.59 20.81 7.58 86.37 0.65 21.46 16 18 O -0.56 -21.48 16.53 -4.45 -0.07 -21.56 16 19 C -0.31 -9.88 6.36 24.07 0.15 -9.73 16 20 C 0.13 3.77 11.05 84.58 0.93 4.71 16 21 N -0.48 -13.87 10.47 -188.73 -1.98 -15.85 16 22 C 0.11 3.22 7.44 87.08 0.65 3.87 16 23 C -0.01 -0.32 7.21 24.10 0.17 -0.15 16 24 C -0.12 -2.44 10.79 22.43 0.24 -2.20 16 25 C -0.22 -3.01 10.88 22.09 0.24 -2.77 16 26 C 0.01 0.08 12.08 67.06 0.81 0.89 16 27 O -0.18 -4.04 10.67 -6.36 -0.07 -4.11 16 28 S 0.22 6.20 17.99 -56.49 -1.02 5.19 16 29 H 0.08 2.21 6.46 -6.93 -0.04 2.16 16 30 H 0.10 3.65 6.90 -2.39 -0.02 3.64 16 31 H 0.06 2.11 5.49 -6.89 -0.04 2.08 16 32 H 0.09 2.99 7.77 -2.39 -0.02 2.98 16 33 H 0.10 2.92 7.55 -2.39 -0.02 2.90 16 34 H 0.09 2.72 8.10 -2.39 -0.02 2.70 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.04 1.52 3.77 -2.39 -0.01 1.51 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 39 H 0.20 5.18 8.06 -2.91 -0.02 5.16 16 40 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.25 0.80 8.06 -2.92 -0.02 0.78 16 Total: -1.00 -71.34 358.72 2.76 -68.58 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.98 Total: 14.05 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 7.58 Total: 18.05 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -6.35 Total: -127.13 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.14 Total: -25.67 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.70 Total: 46.93 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.02 Total: 5.19 kcal Total: -71.34 2.76 -68.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085937917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.250 kcal (2) G-P(sol) polarization free energy of solvation -71.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds