Wall clock time and date at job start Wed Apr 1 2020 03:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47185 * 2 1 4 4 C 1.46505 * 120.00341 * 275.00086 * 3 2 1 5 5 C 1.50697 * 109.47094 * 280.04700 * 4 3 2 6 6 H 1.07993 * 120.00099 * 4.19463 * 5 4 3 7 7 C 1.37875 * 119.99646 * 184.19805 * 5 4 3 8 8 N 1.31520 * 119.99936 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00429 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47276 * 90.00098 * 9 7 5 11 11 H 1.48497 * 109.47483 * 210.00191 * 9 7 5 12 12 H 1.48500 * 109.47146 * 329.99897 * 9 7 5 13 13 S 1.65601 * 119.99931 * 94.99825 * 3 2 1 14 14 O 1.42091 * 106.40131 * 330.34616 * 13 3 2 15 15 O 1.42108 * 106.39998 * 197.42821 * 13 3 2 16 16 N 1.65602 * 107.21842 * 83.88891 * 13 3 2 17 17 C 1.46498 * 119.99593 * 65.28754 * 16 13 3 18 18 C 1.53010 * 109.46826 * 165.49947 * 17 16 13 19 19 C 1.52997 * 109.46959 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.46881 * 180.02562 * 19 18 17 21 21 N 1.29029 * 124.91791 * 90.00118 * 20 19 18 22 22 C 1.31782 * 117.12361 * 179.97438 * 21 20 19 23 23 C 1.50703 * 122.74753 * 179.97438 * 22 21 20 24 24 C 1.33643 * 114.50416 * 0.23117 * 22 21 20 25 25 S 1.70986 * 124.91690 * 269.99627 * 20 19 18 26 26 H 1.09005 * 109.47217 * 299.99831 * 1 2 3 27 27 H 1.09006 * 109.47410 * 60.00161 * 1 2 3 28 28 H 1.08996 * 109.47052 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47507 * 240.00461 * 2 1 3 30 30 H 1.08992 * 109.47557 * 119.99849 * 2 1 3 31 31 H 1.09001 * 109.46764 * 40.04248 * 4 3 2 32 32 H 1.08996 * 109.47618 * 160.03996 * 4 3 2 33 33 H 0.96997 * 120.00401 * 179.97438 * 8 7 5 34 34 H 0.96993 * 120.00064 * 245.28749 * 16 13 3 35 35 H 1.09000 * 109.47410 * 45.49922 * 17 16 13 36 36 H 1.09000 * 109.47826 * 285.49611 * 17 16 13 37 37 H 1.09000 * 109.47147 * 59.99813 * 18 17 16 38 38 H 1.09002 * 109.46834 * 299.99640 * 18 17 16 39 39 H 1.09000 * 109.47435 * 59.99878 * 19 18 17 40 40 H 1.08994 * 109.47239 * 299.99570 * 19 18 17 41 41 H 1.09000 * 109.47156 * 90.00259 * 23 22 21 42 42 H 1.09002 * 109.47207 * 330.00175 * 23 22 21 43 43 H 1.09005 * 109.47262 * 210.00091 * 23 22 21 44 44 H 1.07995 * 126.03788 * 179.76710 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4384 1.6949 -1.9427 6 1 4.0494 0.9147 -1.5135 7 6 3.8297 2.3124 -3.1116 8 7 4.9472 1.9516 -3.7038 9 14 2.7726 3.6616 -3.8544 10 1 3.1946 4.9772 -3.3102 11 1 2.9349 3.6615 -5.3305 12 1 1.3480 3.4186 -3.5132 13 16 2.4121 2.1202 1.4287 14 8 1.5808 1.5388 2.4236 15 8 2.4461 3.5157 1.1626 16 7 3.9642 1.6767 1.7985 17 6 5.0717 2.1004 0.9381 18 6 6.3978 1.8828 1.6697 19 6 7.5544 2.3258 0.7714 20 6 8.8605 2.1109 1.4917 21 7 9.5620 1.0292 1.4421 22 6 10.6836 1.0081 2.1337 23 6 11.5988 -0.1887 2.1665 24 6 10.9402 2.1331 2.8080 25 16 9.6275 3.2654 2.4929 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3125 1.8778 -1.9116 32 1 2.1820 3.1803 -1.0657 33 1 5.2224 2.3858 -4.5264 34 1 4.1400 1.1365 2.5846 35 1 4.9596 3.1571 0.6955 36 1 5.0631 1.5138 0.0194 37 1 6.5098 0.8260 1.9122 38 1 6.4064 2.4694 2.5883 39 1 7.4422 3.3826 0.5292 40 1 7.5460 1.7396 -0.1474 41 1 12.3283 -0.1104 1.3604 42 1 11.0121 -1.0984 2.0384 43 1 12.1180 -0.2230 3.1244 44 1 11.8007 2.3162 3.4342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116914872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:30 Heat of formation + Delta-G solvation = -47.114582 kcal Electronic energy + Delta-G solvation = -26558.925951 eV Core-core repulsion = 22764.566763 eV Total energy + Delta-G solvation = -3794.359188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93035 -36.78120 -36.28854 -36.04927 -35.27858 -33.43108 -32.65479 -30.94028 -30.21929 -27.79987 -27.16445 -26.56601 -22.96441 -22.85884 -21.62388 -21.28765 -19.74791 -18.77425 -17.67974 -17.28845 -16.90095 -16.76795 -15.97495 -15.42291 -15.11741 -14.94256 -14.81492 -14.24625 -13.93072 -13.57130 -13.43539 -13.28390 -13.06329 -12.76634 -12.62167 -12.52212 -12.28305 -12.22658 -12.04665 -11.94473 -11.56883 -11.43084 -11.40021 -11.36266 -11.15348 -11.04630 -10.97164 -10.79697 -10.53280 -10.35315 -10.16235 -9.65052 -9.63468 -9.45981 -8.95111 -8.74544 -8.66315 -8.12767 -6.18225 -4.18633 0.63785 1.23246 1.31683 1.69277 2.71712 3.25714 3.32809 3.37183 3.47381 3.99538 4.10907 4.34099 4.77491 4.97219 5.02169 5.11264 5.12538 5.14163 5.20853 5.35692 5.41458 5.42565 5.53687 5.61193 5.69825 5.75941 5.82156 5.89471 5.99885 6.10956 6.12868 6.20327 6.26298 6.41527 6.54428 6.60994 6.65139 6.87281 7.10843 7.26848 7.48011 7.56750 7.72747 8.38801 8.83693 9.42928 10.93144 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003262 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.881979 B = 8581.625126 C = 9894.994286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.987 5.987 4 C 0.213 3.787 5 C -0.541 4.541 6 H 0.084 0.916 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.866 3.134 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.788 3.212 14 O -0.998 6.998 15 O -0.982 6.982 16 N -1.130 6.130 17 C 0.116 3.884 18 C -0.113 4.113 19 C -0.048 4.048 20 C 0.074 3.926 21 N -0.473 5.473 22 C 0.069 3.931 23 C -0.078 4.078 24 C -0.275 4.275 25 S 0.110 5.890 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.406 0.594 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -1.750 11.872 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.580 4.580 6 H 0.102 0.898 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.693 3.307 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.795 3.205 14 O -0.983 6.983 15 O -0.966 6.966 16 N -0.888 5.888 17 C -0.010 4.010 18 C -0.154 4.154 19 C -0.090 4.090 20 C -0.205 4.205 21 N -0.187 5.187 22 C -0.063 4.063 23 C -0.138 4.138 24 C -0.414 4.414 25 S 0.365 5.635 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.251 -0.397 12.032 14.053 hybrid contribution 0.615 -0.469 -0.420 0.880 sum 7.865 -0.866 11.612 14.051 Atomic orbital electron populations 1.22221 0.96952 1.01510 1.02347 1.20981 0.93528 0.82507 1.02491 1.57511 1.78860 1.23107 1.23250 1.19587 0.98209 0.92288 0.81027 1.21423 1.05942 1.22123 1.08521 0.89818 1.24822 0.94709 0.96454 0.96486 1.69884 1.22003 1.42088 1.18837 0.86992 0.81801 0.83242 0.78647 1.19700 1.21144 1.18919 1.01651 0.72621 0.73640 0.72558 1.93555 1.65797 1.79596 1.59310 1.93561 1.86710 1.31058 1.85268 1.55911 1.25199 1.70009 1.37727 1.21440 0.84011 1.01790 0.93710 1.21717 0.93040 1.02354 0.98296 1.20316 0.85907 1.03919 0.98819 1.27188 1.01265 0.91711 1.00317 1.66172 1.05794 1.25094 1.21653 1.20353 0.93642 0.96732 0.95588 1.20357 0.96986 0.94013 1.02442 1.26742 1.05677 0.97694 1.11273 1.84040 1.15341 1.20102 1.44010 0.92434 0.92289 0.92251 0.89801 0.91866 0.94850 0.93705 0.92489 0.76162 0.90339 0.88470 0.90901 0.91644 0.88931 0.87250 0.90657 0.90487 0.90922 0.80945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.15 0.38 -2.18 16 2 C 0.13 2.17 6.02 -4.04 -0.02 2.15 16 3 N -0.99 -19.00 2.84 -115.67 -0.33 -19.33 16 4 C 0.21 4.74 4.53 -5.19 -0.02 4.72 16 5 C -0.54 -13.42 9.04 -34.44 -0.31 -13.73 16 6 H 0.08 2.17 6.71 -52.49 -0.35 1.82 16 7 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -24.67 13.96 55.43 0.77 -23.90 16 9 Si 0.87 20.20 27.39 -169.99 -4.66 15.54 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.95 6.66 56.52 0.38 -5.58 16 13 S 2.79 52.26 6.07 -107.50 -0.65 51.61 16 14 O -1.00 -19.45 17.17 -57.17 -0.98 -20.43 16 15 O -0.98 -21.43 16.01 -57.17 -0.92 -22.35 16 16 N -1.13 -17.55 6.06 -10.61 -0.06 -17.61 16 17 C 0.12 1.87 6.20 -4.04 -0.03 1.85 16 18 C -0.11 -1.49 5.34 -26.73 -0.14 -1.64 16 19 C -0.05 -0.65 5.80 -27.88 -0.16 -0.81 16 20 C 0.07 0.99 6.64 -13.46 -0.09 0.90 16 21 N -0.47 -6.83 10.53 -8.05 -0.08 -6.92 16 22 C 0.07 0.83 6.74 -84.22 -0.57 0.26 16 23 C -0.08 -0.69 10.31 36.01 0.37 -0.32 16 24 C -0.27 -2.86 11.13 29.12 0.32 -2.53 16 25 S 0.11 1.21 23.18 -107.50 -2.49 -1.28 16 26 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 27 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 30 H 0.06 0.93 7.78 -51.93 -0.40 0.53 16 31 H 0.03 0.74 7.45 -51.93 -0.39 0.35 16 32 H 0.05 1.05 5.97 -51.93 -0.31 0.74 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.41 5.19 8.65 -34.47 -0.30 4.89 16 35 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 36 H 0.10 1.80 5.84 -51.93 -0.30 1.49 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 44 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -31.46 387.33 -10.61 -42.07 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.68 Total: 6.14 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.37 Total: -9.37 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: 0.30 Total: -67.77 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.90 Total: -42.78 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.66 Total: 15.54 kcal Atomic # 16 Polarization: 53.47 SS G_CDS: -3.14 Total: 50.32 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.46 -10.61 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116914872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.044 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds