Wall clock time and date at job start Wed Apr 1 2020 03:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47185 * 2 1 4 4 C 1.46505 * 120.00341 * 275.00086 * 3 2 1 5 5 C 1.50697 * 109.47094 * 280.04700 * 4 3 2 6 6 H 1.07993 * 120.00099 * 4.19463 * 5 4 3 7 7 C 1.37875 * 119.99646 * 184.19805 * 5 4 3 8 8 N 1.31520 * 119.99936 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00429 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47276 * 90.00098 * 9 7 5 11 11 H 1.48497 * 109.47483 * 210.00191 * 9 7 5 12 12 H 1.48500 * 109.47146 * 329.99897 * 9 7 5 13 13 S 1.65601 * 119.99931 * 94.99825 * 3 2 1 14 14 O 1.42091 * 106.40131 * 330.34616 * 13 3 2 15 15 O 1.42108 * 106.39998 * 197.42821 * 13 3 2 16 16 N 1.65602 * 107.21842 * 83.88891 * 13 3 2 17 17 C 1.46498 * 119.99593 * 65.28754 * 16 13 3 18 18 C 1.53010 * 109.46826 * 165.49947 * 17 16 13 19 19 C 1.52997 * 109.46959 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.46881 * 180.02562 * 19 18 17 21 21 N 1.29029 * 124.91791 * 90.00118 * 20 19 18 22 22 C 1.31782 * 117.12361 * 179.97438 * 21 20 19 23 23 C 1.50703 * 122.74753 * 179.97438 * 22 21 20 24 24 C 1.33643 * 114.50416 * 0.23117 * 22 21 20 25 25 S 1.70986 * 124.91690 * 269.99627 * 20 19 18 26 26 H 1.09005 * 109.47217 * 299.99831 * 1 2 3 27 27 H 1.09006 * 109.47410 * 60.00161 * 1 2 3 28 28 H 1.08996 * 109.47052 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47507 * 240.00461 * 2 1 3 30 30 H 1.08992 * 109.47557 * 119.99849 * 2 1 3 31 31 H 1.09001 * 109.46764 * 40.04248 * 4 3 2 32 32 H 1.08996 * 109.47618 * 160.03996 * 4 3 2 33 33 H 0.96997 * 120.00401 * 179.97438 * 8 7 5 34 34 H 0.96993 * 120.00064 * 245.28749 * 16 13 3 35 35 H 1.09000 * 109.47410 * 45.49922 * 17 16 13 36 36 H 1.09000 * 109.47826 * 285.49611 * 17 16 13 37 37 H 1.09000 * 109.47147 * 59.99813 * 18 17 16 38 38 H 1.09002 * 109.46834 * 299.99640 * 18 17 16 39 39 H 1.09000 * 109.47435 * 59.99878 * 19 18 17 40 40 H 1.08994 * 109.47239 * 299.99570 * 19 18 17 41 41 H 1.09000 * 109.47156 * 90.00259 * 23 22 21 42 42 H 1.09002 * 109.47207 * 330.00175 * 23 22 21 43 43 H 1.09005 * 109.47262 * 210.00091 * 23 22 21 44 44 H 1.07995 * 126.03788 * 179.76710 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4384 1.6949 -1.9427 6 1 4.0494 0.9147 -1.5135 7 6 3.8297 2.3124 -3.1116 8 7 4.9472 1.9516 -3.7038 9 14 2.7726 3.6616 -3.8544 10 1 3.1946 4.9772 -3.3102 11 1 2.9349 3.6615 -5.3305 12 1 1.3480 3.4186 -3.5132 13 16 2.4121 2.1202 1.4287 14 8 1.5808 1.5388 2.4236 15 8 2.4461 3.5157 1.1626 16 7 3.9642 1.6767 1.7985 17 6 5.0717 2.1004 0.9381 18 6 6.3978 1.8828 1.6697 19 6 7.5544 2.3258 0.7714 20 6 8.8605 2.1109 1.4917 21 7 9.5620 1.0292 1.4421 22 6 10.6836 1.0081 2.1337 23 6 11.5988 -0.1887 2.1665 24 6 10.9402 2.1331 2.8080 25 16 9.6275 3.2654 2.4929 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3125 1.8778 -1.9116 32 1 2.1820 3.1803 -1.0657 33 1 5.2224 2.3858 -4.5264 34 1 4.1400 1.1365 2.5846 35 1 4.9596 3.1571 0.6955 36 1 5.0631 1.5138 0.0194 37 1 6.5098 0.8260 1.9122 38 1 6.4064 2.4694 2.5883 39 1 7.4422 3.3826 0.5292 40 1 7.5460 1.7396 -0.1474 41 1 12.3283 -0.1104 1.3604 42 1 11.0121 -1.0984 2.0384 43 1 12.1180 -0.2230 3.1244 44 1 11.8007 2.3162 3.4342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116914872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:29 Heat of formation + Delta-G solvation = -69.496199 kcal Electronic energy + Delta-G solvation = -26559.896491 eV Core-core repulsion = 22764.566763 eV Total energy + Delta-G solvation = -3795.329728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84844 -38.34835 -37.77367 -37.38701 -36.88663 -34.60704 -34.51174 -31.91365 -31.75907 -28.89613 -28.58453 -27.70773 -24.56773 -23.97831 -23.15159 -22.46634 -20.65774 -20.26473 -19.03291 -18.64766 -18.52402 -18.33273 -17.39071 -16.71892 -16.29315 -16.18195 -15.93866 -15.87227 -15.33009 -14.79908 -14.62306 -14.47625 -14.28736 -14.08593 -14.04641 -13.72397 -13.54070 -13.50889 -13.34106 -13.27543 -13.13720 -13.04442 -12.71575 -12.60073 -12.58739 -12.33176 -12.21229 -12.21023 -12.07690 -11.90392 -11.66027 -11.53503 -10.69296 -10.59609 -10.36932 -10.35909 -9.75651 -9.61242 -8.21285 -6.23767 -0.31867 -0.22793 0.42862 0.81005 1.39681 1.44546 1.50262 1.79531 1.99180 2.39752 2.60969 3.08350 3.13790 3.45062 3.81407 3.93084 4.03885 4.07312 4.24454 4.30254 4.40168 4.43288 4.48471 4.52041 4.68823 4.71934 4.76636 4.78449 4.85432 4.96296 4.98542 5.01012 5.03537 5.07096 5.18680 5.31552 5.38635 5.42163 5.47821 5.53994 5.83522 6.21088 6.39255 6.81037 6.82949 7.39944 8.92302 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003262 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.881979 B = 8581.625126 C = 9894.994286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.991 5.991 4 C 0.219 3.781 5 C -0.528 4.528 6 H 0.064 0.936 7 C 0.032 3.968 8 N -0.930 5.930 9 Si 0.912 3.088 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.249 1.249 13 S 2.800 3.200 14 O -1.002 7.002 15 O -1.013 7.013 16 N -1.115 6.115 17 C 0.121 3.879 18 C -0.100 4.100 19 C -0.045 4.045 20 C 0.045 3.955 21 N -0.504 5.504 22 C 0.042 3.958 23 C -0.076 4.076 24 C -0.262 4.262 25 S 0.142 5.858 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.422 0.578 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 -1.647 13.594 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.831 5.831 4 C 0.094 3.906 5 C -0.567 4.567 6 H 0.082 0.918 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.737 3.263 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.173 1.173 13 S 2.808 3.192 14 O -0.986 6.986 15 O -0.996 6.996 16 N -0.877 5.877 17 C -0.005 4.005 18 C -0.141 4.141 19 C -0.087 4.087 20 C -0.232 4.232 21 N -0.220 5.220 22 C -0.090 4.090 23 C -0.135 4.135 24 C -0.401 4.401 25 S 0.398 5.602 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.257 0.743 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.414 -0.320 13.779 15.650 hybrid contribution 0.634 -0.554 -0.865 1.207 sum 8.048 -0.874 12.914 15.242 Atomic orbital electron populations 1.22197 0.95456 1.03275 1.01747 1.21236 0.94839 0.81067 1.03213 1.57479 1.79361 1.24158 1.22144 1.19344 0.96961 0.92068 0.82204 1.21583 1.06357 1.20801 1.07994 0.91784 1.25460 0.95664 0.98478 0.97230 1.69997 1.23737 1.43718 1.19518 0.86241 0.81295 0.80821 0.77927 1.19805 1.20991 1.17269 1.01164 0.72962 0.72916 0.72205 1.93544 1.66395 1.79468 1.59233 1.93522 1.87297 1.33144 1.85663 1.55578 1.23998 1.70036 1.38137 1.21295 0.85584 1.00353 0.93265 1.21599 0.91097 1.02909 0.98489 1.20193 0.86770 1.03773 0.97961 1.27030 1.01529 0.92806 1.01875 1.66172 1.07030 1.26131 1.22666 1.20830 0.93632 0.98434 0.96058 1.20439 0.96532 0.92383 1.04178 1.27187 1.05970 0.96625 1.10292 1.83862 1.14945 1.18960 1.42473 0.93069 0.92788 0.89368 0.90333 0.89955 0.94168 0.94581 0.92608 0.74303 0.91627 0.91221 0.90612 0.89636 0.88336 0.89912 0.90056 0.91458 0.88271 0.77694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 10.24 71.98 0.74 -3.96 16 2 C 0.12 3.87 6.02 86.38 0.52 4.39 16 3 N -0.99 -37.63 2.84 -519.86 -1.48 -39.11 16 4 C 0.22 9.71 4.53 85.63 0.39 10.10 16 5 C -0.53 -26.61 9.04 25.60 0.23 -26.38 16 6 H 0.06 3.44 6.71 -2.91 -0.02 3.42 16 7 C 0.03 1.67 5.47 84.65 0.46 2.13 16 8 N -0.93 -52.89 13.96 21.45 0.30 -52.60 16 9 Si 0.91 41.46 27.39 68.60 1.88 43.33 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.25 -10.60 6.66 99.48 0.66 -9.94 16 13 S 2.80 103.06 6.07 -56.49 -0.34 102.71 16 14 O -1.00 -37.53 17.17 -128.00 -2.20 -39.73 16 15 O -1.01 -43.94 16.01 -128.00 -2.05 -45.99 16 16 N -1.12 -34.00 6.06 -187.48 -1.14 -35.14 16 17 C 0.12 3.97 6.20 86.38 0.54 4.51 16 18 C -0.10 -2.64 5.34 30.60 0.16 -2.47 16 19 C -0.05 -1.26 5.80 29.85 0.17 -1.09 16 20 C 0.05 1.20 6.64 88.52 0.59 1.79 16 21 N -0.50 -14.59 10.53 -179.39 -1.89 -16.47 16 22 C 0.04 0.95 6.74 41.52 0.28 1.23 16 23 C -0.08 -1.23 10.31 71.24 0.73 -0.49 16 24 C -0.26 -4.80 11.13 66.78 0.74 -4.06 16 25 S 0.14 2.90 23.18 -56.49 -1.31 1.60 16 26 H 0.05 1.49 7.97 -2.38 -0.02 1.47 16 27 H 0.05 1.55 8.11 -2.38 -0.02 1.53 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 2.58 8.09 -2.39 -0.02 2.56 16 30 H 0.08 2.29 7.78 -2.39 -0.02 2.27 16 31 H 0.04 1.74 7.45 -2.39 -0.02 1.72 16 32 H 0.04 1.68 5.97 -2.39 -0.01 1.67 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.42 10.19 8.65 -96.75 -0.84 9.35 16 35 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 36 H 0.07 2.70 5.84 -2.39 -0.01 2.69 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 1.02 8.12 -2.38 -0.02 1.00 16 44 H 0.21 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -67.72 387.33 -2.54 -70.26 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.13 Total: 25.43 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.56 Total: -14.29 kcal Atomic # 7 Polarization: -139.12 SS G_CDS: -4.20 Total: -143.32 kcal Atomic # 8 Polarization: -81.47 SS G_CDS: -4.25 Total: -85.72 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.33 kcal Atomic # 16 Polarization: 105.96 SS G_CDS: -1.65 Total: 104.31 kcal Total: -67.72 -2.54 -70.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116914872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.760 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds