Wall clock time and date at job start Wed Apr 1 2020 04:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99678 * 2 1 4 4 C 1.50697 * 109.47487 * 89.99827 * 3 2 1 5 5 C 1.28875 * 121.25361 * 95.02285 * 4 3 2 6 6 C 1.51423 * 117.49724 * 180.02562 * 5 4 3 7 7 S 1.83832 * 102.54589 * 16.28384 * 6 5 4 8 8 C 1.51424 * 121.24725 * 274.74148 * 4 3 2 9 9 C 1.34775 * 120.00160 * 179.97438 * 2 1 3 10 10 O 1.21352 * 119.99988 * 185.14772 * 9 2 1 11 11 C 1.49362 * 119.99609 * 5.14933 * 9 2 1 12 12 O 1.21355 * 120.00410 * 6.25453 * 11 9 2 13 13 N 1.34781 * 119.99444 * 186.25101 * 11 9 2 14 14 C 1.39115 * 119.99533 * 174.96626 * 13 11 9 15 15 C 1.39711 * 119.57591 * 185.58639 * 14 13 11 16 16 C 1.38659 * 119.49007 * 179.77058 * 15 14 13 17 17 C 1.38347 * 118.67091 * 0.50118 * 16 15 14 18 18 C 1.40588 * 119.13508 * 359.74382 * 17 16 15 19 19 C 1.41338 * 119.78080 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00342 * 359.97438 * 19 18 17 21 21 C 1.40035 * 119.99921 * 179.97438 * 19 18 17 22 22 N 1.30748 * 119.99718 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46873 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46815 * 120.00201 * 23 21 19 26 26 H 1.48502 * 109.46776 * 240.00184 * 23 21 19 27 27 N 1.31932 * 119.58143 * 5.86458 * 14 13 11 28 28 H 1.09000 * 109.46833 * 95.74251 * 1 2 3 29 29 H 1.08993 * 109.47021 * 215.74058 * 1 2 3 30 30 H 1.08999 * 109.46962 * 335.74945 * 1 2 3 31 31 H 1.09006 * 109.46725 * 209.99542 * 3 2 1 32 32 H 1.09000 * 109.47207 * 329.98882 * 3 2 1 33 33 H 1.07996 * 121.24783 * 359.97438 * 5 4 3 34 34 H 1.09002 * 110.79544 * 134.54869 * 6 5 4 35 35 H 1.09002 * 110.79680 * 257.82765 * 6 5 4 36 36 H 1.09001 * 110.79767 * 281.97277 * 8 4 3 37 37 H 1.09003 * 110.79846 * 45.44713 * 8 4 3 38 38 H 0.96993 * 120.00476 * 354.97384 * 13 11 9 39 39 H 1.08000 * 120.25442 * 0.02562 * 15 14 13 40 40 H 1.07999 * 120.66138 * 180.24668 * 16 15 14 41 41 H 1.07998 * 120.42520 * 179.77255 * 17 16 15 42 42 H 0.96994 * 119.99424 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 6 3.5560 1.4270 2.0190 6 6 3.7179 1.9051 3.4466 7 16 1.9899 2.3001 3.9339 8 6 1.4117 2.4883 2.1969 9 6 2.1389 -1.1672 0.0005 10 8 3.3488 -1.1692 0.0948 11 6 1.3966 -2.4581 -0.1150 12 8 0.2010 -2.4541 -0.3231 13 7 2.0547 -3.6275 0.0118 14 6 1.3492 -4.8264 0.0090 15 6 2.0239 -6.0242 0.2580 16 6 1.3181 -7.2177 0.2595 17 6 -0.0408 -7.1855 0.0021 18 6 -0.6613 -5.9487 -0.2463 19 6 -2.0490 -5.8999 -0.5103 20 1 -2.6290 -6.8108 -0.5211 21 6 -2.6718 -4.6703 -0.7578 22 7 -1.9695 -3.5676 -0.7453 23 14 -4.5059 -4.6057 -1.1060 24 1 -5.0665 -5.9803 -1.0638 25 1 -5.1751 -3.7659 -0.0804 26 1 -4.7340 -4.0198 -2.4514 27 7 0.0525 -4.8185 -0.2341 28 1 -0.3633 -0.1028 -1.0225 29 1 -0.3633 -0.8341 0.6002 30 1 -0.3633 0.9370 0.4221 31 1 3.1500 1.1384 -0.5138 32 1 1.6084 2.0283 -0.5140 33 1 4.3387 0.8741 1.5211 34 1 4.1261 1.1141 4.0757 35 1 4.3475 2.7940 3.4881 36 1 1.4146 3.5362 1.8968 37 1 0.4212 2.0512 2.0706 38 1 3.0201 -3.6331 0.1051 39 1 3.0864 -6.0201 0.4518 40 1 1.8199 -8.1541 0.4536 41 1 -0.6175 -8.0986 -0.0073 42 1 -2.4009 -2.7160 -0.9171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119391178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:31 Heat of formation + Delta-G solvation = 28.445484 kcal Electronic energy + Delta-G solvation = -28142.569656 eV Core-core repulsion = 24216.043047 eV Total energy + Delta-G solvation = -3926.526609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48483 -38.86958 -37.62444 -37.07910 -35.37992 -34.07829 -33.05423 -30.40903 -30.08481 -29.23781 -28.35259 -26.56014 -25.69777 -25.08906 -23.41985 -21.63070 -20.84680 -19.25991 -18.61351 -17.96811 -17.07545 -16.89289 -16.75829 -16.03779 -15.90813 -15.16211 -14.83268 -14.71446 -14.62202 -14.49739 -13.82010 -13.76542 -13.57376 -13.39258 -13.07508 -12.92522 -12.79433 -12.49267 -12.14173 -12.10470 -12.03242 -11.79175 -11.74173 -11.23470 -11.01505 -10.92435 -10.70138 -10.68256 -10.54534 -9.97754 -9.81237 -9.47366 -9.11725 -8.81871 -8.77455 -8.05225 -7.96195 -7.33945 -7.07493 -6.24857 -4.47110 1.53045 1.56335 1.88534 2.04471 2.78060 2.80377 3.05965 3.12660 3.16067 3.21046 3.88165 3.91085 3.99930 4.18600 4.40579 4.82005 4.84746 4.89843 4.99083 5.01465 5.12171 5.12472 5.28476 5.35844 5.41454 5.84175 5.94921 6.01359 6.04879 6.14147 6.35602 6.40812 6.41872 6.55822 6.74074 6.77883 7.11467 7.15742 7.42550 7.50736 7.74412 7.80751 8.00440 8.12786 8.35252 8.60770 8.91164 8.99659 10.12088 10.38646 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.003262 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.514484 B = 8581.006054 C = 9859.687090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.587 5.587 3 C 0.164 3.836 4 C -0.154 4.154 5 C -0.131 4.131 6 C -0.042 4.042 7 S -0.291 6.291 8 C -0.032 4.032 9 C 0.510 3.490 10 O -0.534 6.534 11 C 0.466 3.534 12 O -0.380 6.380 13 N -0.639 5.639 14 C 0.369 3.631 15 C -0.349 4.349 16 C -0.036 4.036 17 C -0.300 4.300 18 C 0.272 3.728 19 C -0.423 4.423 20 H 0.083 0.917 21 C 0.061 3.939 22 N -0.663 5.663 23 Si 0.897 3.103 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.275 1.275 27 N -0.474 5.474 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.411 0.589 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 13.756 2.315 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.321 5.321 3 C 0.040 3.960 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.190 4.190 7 S -0.065 6.065 8 C -0.179 4.179 9 C 0.293 3.707 10 O -0.411 6.411 11 C 0.243 3.757 12 O -0.243 6.243 13 N -0.287 5.287 14 C 0.131 3.869 15 C -0.374 4.374 16 C -0.060 4.060 17 C -0.324 4.324 18 C 0.147 3.853 19 C -0.454 4.454 20 H 0.102 0.898 21 C -0.168 4.168 22 N -0.282 5.282 23 Si 0.721 3.279 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.200 1.200 27 N -0.193 5.193 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.162 0.838 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.246 0.754 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.810 14.967 3.130 16.357 hybrid contribution 0.752 -0.786 -0.914 1.421 sum 6.562 14.181 2.216 15.782 Atomic orbital electron populations 1.22250 0.77023 1.03175 1.03910 1.47699 1.08346 1.04416 1.71597 1.20262 0.98826 0.85116 0.91798 1.21776 0.95358 1.00141 0.98345 1.22718 0.98975 0.98689 0.94755 1.23162 0.95029 1.04275 0.96520 1.88144 1.11741 1.93360 1.13269 1.23116 1.01393 1.02666 0.90755 1.20891 0.87470 0.85714 0.76595 1.90657 1.14121 1.87533 1.48794 1.20049 0.88746 0.84397 0.82528 1.91172 1.11326 1.84982 1.36843 1.43001 1.10648 1.03866 1.71185 1.18535 0.91145 0.82914 0.94326 1.20517 0.98785 0.92414 1.25733 1.20587 0.94051 0.95672 0.95709 1.21655 0.94799 0.98475 1.17426 1.18363 0.93221 0.85600 0.88164 1.19623 0.91811 0.93970 1.39989 0.89838 1.26150 0.99579 0.95913 0.95142 1.70325 1.34978 0.97950 1.24926 0.86441 0.83414 0.79476 0.78540 1.18589 1.20001 1.20046 1.68636 1.01790 1.28695 1.20217 0.91438 0.88065 0.92336 0.88705 0.89105 0.83761 0.87283 0.87893 0.87992 0.87416 0.75405 0.88773 0.88383 0.88388 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 9.22 59.85 0.55 1.58 16 2 N -0.59 -7.94 2.86 -183.50 -0.52 -8.46 16 3 C 0.16 1.68 5.58 -5.20 -0.03 1.65 16 4 C -0.15 -1.57 5.52 -100.14 -0.55 -2.12 16 5 C -0.13 -1.36 9.88 -35.10 -0.35 -1.70 16 6 C -0.04 -0.40 7.46 36.36 0.27 -0.13 16 7 S -0.29 -3.38 23.55 -107.50 -2.53 -5.91 16 8 C -0.03 -0.30 7.32 36.36 0.27 -0.04 16 9 C 0.51 8.49 7.72 -11.63 -0.09 8.40 16 10 O -0.53 -9.12 15.96 5.49 0.09 -9.03 16 11 C 0.47 9.36 7.65 -11.62 -0.09 9.27 16 12 O -0.38 -8.56 9.16 5.49 0.05 -8.51 16 13 N -0.64 -13.05 5.37 -11.83 -0.06 -13.12 16 14 C 0.37 8.87 7.42 -155.09 -1.15 7.72 16 15 C -0.35 -7.77 9.96 -38.88 -0.39 -8.16 16 16 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 17 C -0.30 -7.36 9.83 -38.66 -0.38 -7.74 16 18 C 0.27 7.37 6.55 -85.00 -0.56 6.82 16 19 C -0.42 -11.18 9.14 -37.73 -0.34 -11.53 16 20 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 21 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 22 N -0.66 -16.98 9.00 55.55 0.50 -16.48 16 23 Si 0.90 18.32 29.56 -169.99 -5.02 13.30 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 27 N -0.47 -12.80 5.74 -10.28 -0.06 -12.86 16 28 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 29 H 0.10 1.67 5.98 -51.93 -0.31 1.36 16 30 H 0.06 0.58 7.04 -51.93 -0.37 0.22 16 31 H 0.09 0.99 7.41 -51.93 -0.38 0.61 16 32 H 0.09 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.14 1.54 7.89 -52.49 -0.41 1.13 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.11 1.03 7.16 -51.93 -0.37 0.66 16 38 H 0.41 7.22 8.18 -40.82 -0.33 6.89 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -30.89 365.98 -10.49 -41.38 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.10 Total: 9.96 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -3.33 Total: 4.24 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.15 Total: -50.93 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.14 Total: -17.55 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.30 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.53 Total: -5.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.89 -10.49 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119391178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.822 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds