Wall clock time and date at job start Wed Apr 1 2020 04:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47216 * 2 1 4 4 C 1.36928 * 120.00242 * 84.31997 * 3 2 1 5 5 H 1.07996 * 120.00265 * 32.48670 * 4 3 2 6 6 C 1.38821 * 120.00111 * 212.76356 * 4 3 2 7 7 N 1.31618 * 119.99860 * 10.70091 * 6 4 3 8 8 Si 1.86797 * 120.00001 * 190.70591 * 6 4 3 9 9 H 1.48501 * 109.47147 * 89.99943 * 8 6 4 10 10 H 1.48501 * 109.46795 * 209.99929 * 8 6 4 11 11 H 1.48498 * 109.47314 * 329.99915 * 8 6 4 12 12 C 1.46503 * 119.99769 * 264.32357 * 3 2 1 13 13 H 1.09000 * 109.47481 * 183.65777 * 12 3 2 14 14 C 1.53001 * 109.47414 * 63.65372 * 12 3 2 15 15 C 1.53007 * 109.47016 * 303.65388 * 12 3 2 16 16 N 1.46496 * 109.47434 * 305.00369 * 15 12 3 17 17 C 1.34777 * 120.00197 * 179.97438 * 16 15 12 18 18 O 1.21688 * 119.99753 * 359.97438 * 17 16 15 19 19 C 1.46676 * 119.99606 * 179.97438 * 17 16 15 20 20 C 1.37874 * 126.22752 * 179.71404 * 19 17 16 21 21 C 1.39834 * 107.08572 * 179.85151 * 20 19 17 22 22 S 1.76196 * 126.07047 * 180.16021 * 21 20 19 23 23 O 1.42103 * 106.40195 * 23.82174 * 22 21 20 24 24 O 1.42105 * 106.40525 * 156.73749 * 22 21 20 25 25 F 1.60993 * 107.21945 * 270.27887 * 22 21 20 26 26 C 1.35458 * 107.86295 * 0.41533 * 21 20 19 27 27 N 1.35529 * 108.86877 * 359.74319 * 26 21 20 28 28 H 0.97005 * 125.67753 * 179.97438 * 27 26 21 29 29 H 1.09001 * 109.47740 * 300.00103 * 1 2 3 30 30 H 1.09002 * 109.47184 * 60.00203 * 1 2 3 31 31 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47071 * 239.99604 * 2 1 3 33 33 H 1.09002 * 109.47184 * 119.99797 * 2 1 3 34 34 H 0.96996 * 120.00103 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47260 * 300.00376 * 14 12 3 36 36 H 1.09003 * 109.46395 * 60.00302 * 14 12 3 37 37 H 1.09002 * 109.46956 * 179.97438 * 14 12 3 38 38 H 1.09004 * 109.46698 * 65.00160 * 15 12 3 39 39 H 1.08995 * 109.47076 * 184.99589 * 15 12 3 40 40 H 0.97010 * 119.99396 * 0.02562 * 16 15 12 41 41 H 1.07998 * 126.45756 * 0.02562 * 20 19 17 42 42 H 1.07998 * 125.56656 * 179.76087 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1359 2.0658 1.1800 5 1 2.3890 1.5381 2.0876 6 6 1.9241 3.4374 1.2107 7 7 1.4086 4.0473 0.1645 8 14 2.3709 4.4175 2.7369 9 1 3.7756 4.8872 2.6299 10 1 1.4651 5.5882 2.8560 11 1 2.2271 3.5562 3.9380 12 6 2.3808 2.0299 -1.2626 13 1 2.7804 3.0234 -1.0590 14 6 1.1393 2.1513 -2.1485 15 6 3.4400 1.1915 -1.9810 16 7 4.5802 0.9748 -1.0872 17 6 5.6404 0.2573 -1.5090 18 8 5.6501 -0.2108 -2.6321 19 6 6.7822 0.0409 -0.6141 20 6 7.9244 -0.6729 -0.9086 21 6 8.7449 -0.6202 0.2225 22 16 10.3328 -1.3657 0.3879 23 8 10.8434 -1.5187 -0.9294 24 8 11.0117 -0.6423 1.4053 25 9 10.1040 -2.8521 0.9624 26 6 8.0997 0.1008 1.1705 27 7 6.9060 0.5081 0.6747 28 1 6.2482 1.0402 1.1492 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.2603 5.0056 0.1861 35 1 0.7396 1.1580 -2.3521 36 1 0.3848 2.7487 -1.6366 37 1 1.4090 2.6344 -3.0877 38 1 3.0118 0.2297 -2.2635 39 1 3.7742 1.7171 -2.8755 40 1 4.5719 1.3471 -0.1914 41 1 8.1452 -1.1753 -1.8388 42 1 8.4754 0.3161 2.1599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155307162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:11 Heat of formation + Delta-G solvation = -127.311583 kcal Electronic energy + Delta-G solvation = -28791.394596 eV Core-core repulsion = 24427.344629 eV Total energy + Delta-G solvation = -4364.049967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.115 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.03146 -42.57818 -40.32687 -38.61052 -38.57020 -37.27641 -35.49122 -33.75947 -32.89903 -32.31365 -30.73370 -30.11288 -27.21320 -25.83732 -23.79149 -23.39674 -23.20276 -21.39877 -21.12378 -20.99018 -20.04311 -18.74130 -18.62626 -17.65234 -17.53996 -17.06023 -16.95635 -16.67832 -16.37978 -16.02511 -15.43580 -15.32503 -15.18034 -15.11782 -14.82914 -14.64699 -14.38032 -14.03852 -13.83941 -13.82227 -13.66268 -13.48616 -13.38629 -13.30141 -13.11062 -12.96634 -12.80378 -12.66393 -12.61999 -12.22510 -12.09106 -11.78675 -11.32013 -11.28657 -11.25392 -10.84684 -10.47422 -10.16559 -9.63105 -8.55788 -7.81459 -5.33485 -1.01945 0.28208 0.76402 1.48196 1.54744 1.59586 1.83543 2.09096 2.17578 2.26504 2.53293 2.55952 3.08509 3.35116 3.61872 3.76930 3.94056 4.01727 4.20642 4.38021 4.44759 4.51243 4.63683 4.71518 4.83359 4.88478 4.89491 5.01995 5.08227 5.15354 5.16613 5.31631 5.35256 5.43998 5.59166 5.72337 5.76752 5.92451 6.13430 6.48662 6.55040 7.09168 7.24371 7.91055 8.43067 9.22530 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.002900 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.278007 B = 9651.795448 C =10660.738008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 N -0.591 5.591 4 C -0.260 4.260 5 H 0.068 0.932 6 C -0.032 4.032 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.282 1.282 10 H -0.308 1.308 11 H -0.274 1.274 12 C 0.185 3.815 13 H 0.078 0.922 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.697 5.697 17 C 0.579 3.421 18 O -0.575 6.575 19 C -0.067 4.067 20 C -0.031 4.031 21 C -0.786 4.786 22 S 2.743 3.257 23 O -0.960 6.960 24 O -0.947 6.947 25 F -0.471 7.471 26 C 0.181 3.819 27 N -0.512 5.512 28 H 0.440 0.560 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.247 0.753 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.408 0.592 41 H 0.164 0.836 42 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.481 -8.636 3.640 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 N -0.313 5.313 4 C -0.390 4.390 5 H 0.085 0.915 6 C -0.229 4.229 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.208 1.208 10 H -0.236 1.236 11 H -0.199 1.199 12 C 0.078 3.922 13 H 0.096 0.904 14 C -0.193 4.193 15 C -0.013 4.013 16 N -0.346 5.346 17 C 0.366 3.634 18 O -0.456 6.456 19 C -0.178 4.178 20 C -0.056 4.056 21 C -0.880 4.880 22 S 2.831 3.169 23 O -0.958 6.958 24 O -0.946 6.946 25 F -0.470 7.470 26 C 0.034 3.966 27 N -0.106 5.106 28 H 0.282 0.718 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.245 0.755 41 H 0.181 0.819 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 12.847 -8.987 2.902 15.944 hybrid contribution -1.474 1.587 1.007 2.389 sum 11.372 -7.400 3.909 14.120 Atomic orbital electron populations 1.22273 0.99253 0.99764 1.00481 1.20868 0.92298 0.86521 0.98692 1.44091 1.74252 1.10385 1.02619 1.19344 1.40893 0.90245 0.88529 0.91457 1.25745 0.99087 0.99150 0.98913 1.70083 1.46612 1.08793 1.30599 0.85485 0.77244 0.78094 0.80738 1.20822 1.23588 1.19901 1.20364 0.91404 0.95529 0.84935 0.90399 1.21974 0.99552 0.99583 0.98142 1.21949 0.86674 1.00164 0.92540 1.45761 1.17366 1.52814 1.18679 1.17291 0.81654 0.78481 0.85937 1.90803 1.81252 1.52631 1.20901 1.20488 0.99276 1.10663 0.87410 1.21060 0.90105 0.96571 0.97891 1.30517 1.26296 1.27328 1.03849 1.01568 0.72793 0.69674 0.72850 1.93698 1.77605 1.85566 1.38969 1.93706 1.71137 1.70320 1.59445 1.93664 1.95969 1.65161 1.92219 1.22729 0.83083 0.91167 0.99596 1.42516 1.17107 1.39757 1.11246 0.71825 0.95109 0.94071 0.92496 0.93510 0.94141 0.94356 0.94185 0.93106 0.93882 0.92677 0.92385 0.75518 0.81866 0.74271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 10.02 71.98 0.72 -4.86 16 2 C 0.14 5.10 5.73 86.38 0.50 5.59 16 3 N -0.59 -23.90 1.83 -678.03 -1.24 -25.14 16 4 C -0.26 -11.55 9.51 84.04 0.80 -10.75 16 5 H 0.07 2.93 7.85 -2.91 -0.02 2.90 16 6 C -0.03 -1.48 5.02 84.86 0.43 -1.05 16 7 N -0.92 -46.08 9.91 21.65 0.21 -45.86 16 8 Si 0.95 38.53 29.57 68.60 2.03 40.55 16 9 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 10 H -0.31 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 12 C 0.18 7.31 1.92 44.99 0.09 7.39 16 13 H 0.08 3.58 5.96 -2.39 -0.01 3.56 16 14 C -0.13 -5.20 8.23 71.98 0.59 -4.60 16 15 C 0.11 3.93 4.85 86.38 0.42 4.35 16 16 N -0.70 -22.15 5.38 -467.09 -2.51 -24.66 16 17 C 0.58 18.62 7.79 86.45 0.67 19.29 16 18 O -0.58 -22.34 16.88 -4.31 -0.07 -22.41 16 19 C -0.07 -1.69 7.06 40.35 0.28 -1.40 16 20 C -0.03 -0.72 10.45 22.57 0.24 -0.48 16 21 C -0.79 -13.44 6.23 22.01 0.14 -13.30 16 22 S 2.74 42.32 7.00 -56.49 -0.40 41.92 16 23 O -0.96 -21.56 17.89 -128.00 -2.29 -23.85 16 24 O -0.95 -17.22 17.87 -128.00 -2.29 -19.50 16 25 F -0.47 -6.89 17.91 44.97 0.81 -6.08 16 26 C 0.18 2.39 11.64 83.48 0.97 3.36 16 27 N -0.51 -8.93 5.99 -183.63 -1.10 -10.03 16 28 H 0.44 6.20 8.19 -92.70 -0.76 5.44 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.51 6.03 -2.39 -0.01 1.50 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.60 6.35 -2.39 -0.02 1.59 16 33 H 0.04 1.41 8.09 -2.39 -0.02 1.39 16 34 H 0.25 12.47 8.31 -92.71 -0.77 11.70 16 35 H 0.04 1.44 6.49 -2.39 -0.02 1.43 16 36 H 0.05 2.31 7.12 -2.39 -0.02 2.29 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.96 6.75 -2.38 -0.02 1.95 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.41 12.34 7.22 -92.70 -0.67 11.67 16 41 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 42 H 0.24 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -66.69 367.04 -1.35 -68.04 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.34 Total: 23.51 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.84 Total: 3.52 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -4.64 Total: -105.70 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -4.65 Total: -65.77 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 0.81 Total: -6.08 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 16 Polarization: 42.32 SS G_CDS: -0.40 Total: 41.92 kcal Total: -66.69 -1.35 -68.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155307162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.276 kcal (2) G-P(sol) polarization free energy of solvation -66.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds