Wall clock time and date at job start Wed Apr 1 2020 04:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42105 * 110.53828 * 2 1 4 4 O 1.42094 * 110.54207 * 223.24945 * 2 1 3 5 5 N 1.65602 * 104.44719 * 111.62009 * 2 1 3 6 6 C 1.39752 * 120.00003 * 266.30344 * 5 2 1 7 7 C 1.38929 * 120.07560 * 49.91786 * 6 5 2 8 8 C 1.38079 * 119.92292 * 179.74297 * 7 6 5 9 9 C 1.38309 * 120.07782 * 0.55799 * 8 7 6 10 10 C 1.38268 * 120.14615 * 359.69326 * 9 8 7 11 11 C 1.50704 * 119.96217 * 180.02562 * 10 9 8 12 12 N 1.46904 * 109.46803 * 269.97786 * 11 10 9 13 13 C 1.38121 * 120.07693 * 0.02562 * 10 9 8 14 14 C 1.39158 * 119.99519 * 86.30692 * 5 2 1 15 15 C 1.38746 * 119.65633 * 264.89654 * 14 5 2 16 16 C 1.40785 * 118.67022 * 180.28098 * 15 14 5 17 17 C 1.41549 * 120.99689 * 179.70590 * 16 15 14 18 18 H 1.07998 * 120.00083 * 26.44007 * 17 16 15 19 19 C 1.40030 * 119.99888 * 206.44579 * 17 16 15 20 20 N 1.30740 * 120.00092 * 12.92461 * 19 17 16 21 21 Si 1.86800 * 119.99764 * 192.92018 * 19 17 16 22 22 H 1.48497 * 109.47027 * 60.00273 * 21 19 17 23 23 H 1.48501 * 109.46835 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47381 * 300.00111 * 21 19 17 25 25 C 1.41195 * 118.00821 * 359.46331 * 16 15 14 26 26 C 1.36563 * 119.14541 * 0.51614 * 25 16 15 27 27 N 1.32076 * 121.27099 * 359.74586 * 26 25 16 28 28 H 1.08996 * 109.47347 * 316.75305 * 1 2 3 29 29 H 1.08999 * 109.46889 * 76.75711 * 1 2 3 30 30 H 1.09003 * 109.46946 * 196.74853 * 1 2 3 31 31 H 1.08001 * 120.04279 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.96192 * 180.27357 * 8 7 6 33 33 H 1.08001 * 119.93060 * 179.72115 * 9 8 7 34 34 H 1.08999 * 109.46978 * 29.97424 * 11 10 9 35 35 H 1.08998 * 109.47126 * 149.97964 * 11 10 9 36 36 H 1.00900 * 110.99758 * 56.04602 * 12 11 10 37 37 H 1.00908 * 110.99525 * 179.97438 * 12 11 10 38 38 H 1.07999 * 120.04098 * 180.02562 * 13 10 9 39 39 H 1.08002 * 120.66651 * 0.02562 * 15 14 5 40 40 H 0.96995 * 120.00160 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.42317 * 180.29395 * 25 16 15 42 42 H 1.08003 * 119.36329 * 179.76592 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.4771 0.2898 2.5468 7 6 1.5696 1.2998 2.8406 8 6 1.8171 2.1649 3.8880 9 6 2.9724 2.0340 4.6370 10 6 3.8802 1.0331 4.3440 11 6 5.1375 0.8938 5.1631 12 7 6.2065 1.7014 4.5605 13 6 3.6361 0.1607 3.3013 14 6 2.3256 -1.9643 1.6920 15 6 1.2401 -2.6632 2.2002 16 6 1.3644 -4.0511 2.4011 17 6 0.2904 -4.8112 2.9228 18 1 -0.7267 -4.4767 2.7814 19 6 0.5466 -5.9969 3.6224 20 7 1.7625 -6.2750 4.0142 21 14 -0.8489 -7.1812 3.9958 22 1 -1.4621 -7.6405 2.7238 23 1 -0.3189 -8.3517 4.7403 24 1 -1.8750 -6.4931 4.8198 25 6 2.5908 -4.6629 2.0617 26 6 3.6039 -3.8926 1.5666 27 7 3.4551 -2.5914 1.3957 28 1 -0.3634 0.7485 0.7041 29 1 -0.3633 0.2354 -1.0003 30 1 -0.3633 -0.9841 0.2962 31 1 0.6697 1.4060 2.2529 32 1 1.1098 2.9476 4.1198 33 1 3.1657 2.7147 5.4529 34 1 4.9493 1.2404 6.1793 35 1 5.4419 -0.1525 5.1865 36 1 5.9231 2.6654 4.4683 37 1 7.0607 1.6251 5.0922 38 1 4.3454 -0.6211 3.0732 39 1 0.3196 -2.1521 2.4408 40 1 1.9401 -7.0965 4.4984 41 1 2.7271 -5.7260 2.1954 42 1 4.5447 -4.3563 1.3094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156489329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:55 Heat of formation + Delta-G solvation = -0.889953 kcal Electronic energy + Delta-G solvation = -28486.586370 eV Core-core repulsion = 24558.787681 eV Total energy + Delta-G solvation = -3927.798689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.75365 -38.53884 -36.83811 -35.96026 -35.64512 -34.44530 -33.84007 -30.89505 -30.51882 -30.00757 -29.36827 -27.93500 -26.09132 -24.94927 -22.81409 -21.62379 -21.45267 -21.27251 -18.96027 -17.99781 -17.49451 -16.53842 -16.30925 -15.99207 -15.87013 -15.46252 -15.14017 -14.92462 -14.76266 -14.42211 -14.27056 -13.69175 -13.38192 -13.29300 -13.14964 -12.91724 -12.60720 -12.56383 -12.34984 -12.25804 -11.99784 -11.82520 -11.66794 -11.53694 -11.36865 -11.23406 -11.11058 -10.99794 -10.81531 -10.47087 -10.19476 -9.93993 -9.55096 -8.81717 -8.57695 -8.38966 -8.18421 -7.89153 -7.70560 -6.96059 -4.75917 0.37174 1.47204 1.63043 2.44749 2.64001 2.72683 2.95011 2.96912 3.10671 3.75627 3.86144 4.08006 4.31990 4.47954 4.70003 4.81447 4.85874 4.97292 5.01322 5.10238 5.27658 5.35559 5.43864 5.56465 5.67675 5.76209 5.80876 5.86507 6.12283 6.22970 6.47533 6.53530 6.61583 6.67094 6.70221 6.75049 6.81821 6.96972 7.05409 7.19642 7.27160 7.37999 7.43880 7.70785 7.95345 8.28422 8.55568 8.58610 9.40069 9.95737 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.004152 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.544322 B = 6741.405120 C = 7936.443747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.599 3.401 3 O -0.949 6.949 4 O -0.929 6.929 5 N -0.879 5.879 6 C 0.181 3.819 7 C -0.143 4.143 8 C -0.098 4.098 9 C -0.132 4.132 10 C -0.071 4.071 11 C 0.103 3.897 12 N -0.844 5.844 13 C -0.091 4.091 14 C 0.330 3.670 15 C -0.256 4.256 16 C 0.134 3.866 17 C -0.453 4.453 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.786 5.786 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.195 4.195 26 C 0.100 3.900 27 N -0.552 5.552 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.341 0.659 37 H 0.341 0.659 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.286 0.714 41 H 0.131 0.869 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.377 11.056 2.468 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.694 3.306 3 O -0.939 6.939 4 O -0.919 6.919 5 N -0.702 5.702 6 C 0.087 3.913 7 C -0.164 4.164 8 C -0.116 4.116 9 C -0.152 4.152 10 C -0.072 4.072 11 C -0.027 4.027 12 N -0.374 5.374 13 C -0.113 4.113 14 C 0.105 3.895 15 C -0.283 4.283 16 C 0.125 3.875 17 C -0.484 4.484 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.411 5.411 21 Si 0.739 3.261 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.218 4.218 26 C -0.052 4.052 27 N -0.269 5.269 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.149 0.851 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.002 11.105 0.870 11.139 hybrid contribution -1.978 -0.740 1.814 2.784 sum -1.976 10.365 2.684 10.887 Atomic orbital electron populations 1.30662 1.28433 1.12341 1.11110 1.05467 0.77926 0.74129 0.73058 1.93609 1.77593 1.37399 1.85318 1.93646 1.76853 1.61006 1.60420 1.52841 1.80759 1.10471 1.26147 1.17329 0.93540 0.90442 0.90005 1.20965 0.98231 0.97762 0.99489 1.20749 0.97342 0.98589 0.94947 1.20900 0.95007 0.98622 1.00660 1.19590 0.95681 0.95584 0.96338 1.20687 0.88964 0.99266 0.93761 1.58656 1.05927 1.15042 1.57728 1.21094 0.95355 0.99778 0.95072 1.17250 0.91429 0.80644 1.00157 1.21817 0.98949 0.94913 1.12654 1.17706 0.92902 0.89806 0.87043 1.19558 0.94271 1.04566 1.30032 0.89922 1.25958 0.96869 0.97917 0.93522 1.69720 1.21302 1.23655 1.26463 0.86239 0.81068 0.79205 0.79557 1.18611 1.20102 1.18841 1.22102 0.95108 1.01327 1.03233 1.21569 0.98107 0.88329 0.97176 1.66810 1.25041 1.11744 1.23283 0.85447 0.85371 0.84457 0.86541 0.85700 0.86461 0.94684 0.89964 0.84672 0.84634 0.84754 0.87591 0.90323 0.85099 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -8.30 10.85 101.05 1.10 -7.21 16 2 S 2.60 46.08 5.55 -107.50 -0.60 45.49 16 3 O -0.95 -17.95 16.61 -57.54 -0.96 -18.91 16 4 O -0.93 -20.01 17.30 -57.54 -1.00 -21.01 16 5 N -0.88 -17.25 2.92 -10.02 -0.03 -17.28 16 6 C 0.18 3.32 5.15 -83.75 -0.43 2.89 16 7 C -0.14 -2.18 8.86 -39.38 -0.35 -2.53 16 8 C -0.10 -1.27 10.04 -39.61 -0.40 -1.67 16 9 C -0.13 -1.71 9.70 -39.54 -0.38 -2.10 16 10 C -0.07 -1.06 5.39 -104.65 -0.56 -1.62 16 11 C 0.10 1.29 6.91 -4.97 -0.03 1.25 16 12 N -0.84 -9.61 9.61 -11.40 -0.11 -9.72 16 13 C -0.09 -1.67 9.15 -39.38 -0.36 -2.03 16 14 C 0.33 7.46 4.93 -154.89 -0.76 6.70 16 15 C -0.26 -5.87 9.83 -38.43 -0.38 -6.25 16 16 C 0.13 3.33 5.58 -106.55 -0.59 2.73 16 17 C -0.45 -11.01 9.12 -37.65 -0.34 -11.35 16 18 H 0.08 1.90 7.88 -52.49 -0.41 1.48 16 19 C 0.08 1.78 5.25 -17.34 -0.09 1.69 16 20 N -0.79 -18.73 10.89 55.55 0.60 -18.12 16 21 Si 0.92 17.21 29.58 -169.99 -5.03 12.18 16 22 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 23 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 25 C -0.20 -4.77 8.72 -39.06 -0.34 -5.11 16 26 C 0.10 2.33 11.10 -18.05 -0.20 2.13 16 27 N -0.55 -13.32 10.30 -12.80 -0.13 -13.45 16 28 H 0.13 1.25 6.62 -51.93 -0.34 0.91 16 29 H 0.13 1.24 8.14 -51.92 -0.42 0.81 16 30 H 0.14 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.12 1.46 6.19 -52.49 -0.32 1.14 16 32 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.04 0.36 8.08 -51.93 -0.42 -0.05 16 35 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.34 3.45 8.98 -39.29 -0.35 3.10 16 37 H 0.34 3.03 9.08 -39.29 -0.36 2.68 16 38 H 0.13 2.74 7.88 -52.49 -0.41 2.32 16 39 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 41 H 0.13 3.22 6.26 -52.49 -0.33 2.89 16 42 H 0.13 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -31.98 370.51 -10.84 -42.82 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.04 Total: 14.90 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -4.13 Total: -22.48 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.33 Total: -58.57 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.95 Total: -39.92 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 16 Polarization: 46.08 SS G_CDS: -0.60 Total: 45.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.98 -10.84 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156489329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.926 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds