Wall clock time and date at job start Wed Apr 1 2020 04:37:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81406 * 1
3 3 O 1.42105 * 110.53828 * 2 1
4 4 O 1.42094 * 110.54207 * 223.24945 * 2 1 3
5 5 N 1.65602 * 104.44719 * 111.62009 * 2 1 3
6 6 C 1.39752 * 120.00003 * 266.30344 * 5 2 1
7 7 C 1.38929 * 120.07560 * 49.91786 * 6 5 2
8 8 C 1.38079 * 119.92292 * 179.74297 * 7 6 5
9 9 C 1.38309 * 120.07782 * 0.55799 * 8 7 6
10 10 C 1.38268 * 120.14615 * 359.69326 * 9 8 7
11 11 C 1.50704 * 119.96217 * 180.02562 * 10 9 8
12 12 N 1.46904 * 109.46803 * 269.97786 * 11 10 9
13 13 C 1.38121 * 120.07693 * 0.02562 * 10 9 8
14 14 C 1.39158 * 119.99519 * 86.30692 * 5 2 1
15 15 C 1.38746 * 119.65633 * 264.89654 * 14 5 2
16 16 C 1.40785 * 118.67022 * 180.28098 * 15 14 5
17 17 C 1.41549 * 120.99689 * 179.70590 * 16 15 14
18 18 H 1.07998 * 120.00083 * 26.44007 * 17 16 15
19 19 C 1.40030 * 119.99888 * 206.44579 * 17 16 15
20 20 N 1.30740 * 120.00092 * 12.92461 * 19 17 16
21 21 Si 1.86800 * 119.99764 * 192.92018 * 19 17 16
22 22 H 1.48497 * 109.47027 * 60.00273 * 21 19 17
23 23 H 1.48501 * 109.46835 * 179.97438 * 21 19 17
24 24 H 1.48497 * 109.47381 * 300.00111 * 21 19 17
25 25 C 1.41195 * 118.00821 * 359.46331 * 16 15 14
26 26 C 1.36563 * 119.14541 * 0.51614 * 25 16 15
27 27 N 1.32076 * 121.27099 * 359.74586 * 26 25 16
28 28 H 1.08996 * 109.47347 * 316.75305 * 1 2 3
29 29 H 1.08999 * 109.46889 * 76.75711 * 1 2 3
30 30 H 1.09003 * 109.46946 * 196.74853 * 1 2 3
31 31 H 1.08001 * 120.04279 * 359.97438 * 7 6 5
32 32 H 1.08004 * 119.96192 * 180.27357 * 8 7 6
33 33 H 1.08001 * 119.93060 * 179.72115 * 9 8 7
34 34 H 1.08999 * 109.46978 * 29.97424 * 11 10 9
35 35 H 1.08998 * 109.47126 * 149.97964 * 11 10 9
36 36 H 1.00900 * 110.99758 * 56.04602 * 12 11 10
37 37 H 1.00908 * 110.99525 * 179.97438 * 12 11 10
38 38 H 1.07999 * 120.04098 * 180.02562 * 13 10 9
39 39 H 1.08002 * 120.66651 * 0.02562 * 15 14 5
40 40 H 0.96995 * 120.00160 * 180.02562 * 20 19 17
41 41 H 1.08002 * 120.42317 * 180.29395 * 25 16 15
42 42 H 1.08003 * 119.36329 * 179.76592 * 26 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8141 0.0000 0.0000
3 8 2.3126 1.3307 0.0000
4 8 2.3127 -0.9692 -0.9117
5 7 2.2272 -0.5909 1.4908
6 6 2.4771 0.2898 2.5468
7 6 1.5696 1.2998 2.8406
8 6 1.8171 2.1649 3.8880
9 6 2.9724 2.0340 4.6370
10 6 3.8802 1.0331 4.3440
11 6 5.1375 0.8938 5.1631
12 7 6.2065 1.7014 4.5605
13 6 3.6361 0.1607 3.3013
14 6 2.3256 -1.9643 1.6920
15 6 1.2401 -2.6632 2.2002
16 6 1.3644 -4.0511 2.4011
17 6 0.2904 -4.8112 2.9228
18 1 -0.7267 -4.4767 2.7814
19 6 0.5466 -5.9969 3.6224
20 7 1.7625 -6.2750 4.0142
21 14 -0.8489 -7.1812 3.9958
22 1 -1.4621 -7.6405 2.7238
23 1 -0.3189 -8.3517 4.7403
24 1 -1.8750 -6.4931 4.8198
25 6 2.5908 -4.6629 2.0617
26 6 3.6039 -3.8926 1.5666
27 7 3.4551 -2.5914 1.3957
28 1 -0.3634 0.7485 0.7041
29 1 -0.3633 0.2354 -1.0003
30 1 -0.3633 -0.9841 0.2962
31 1 0.6697 1.4060 2.2529
32 1 1.1098 2.9476 4.1198
33 1 3.1657 2.7147 5.4529
34 1 4.9493 1.2404 6.1793
35 1 5.4419 -0.1525 5.1865
36 1 5.9231 2.6654 4.4683
37 1 7.0607 1.6251 5.0922
38 1 4.3454 -0.6211 3.0732
39 1 0.3196 -2.1521 2.4408
40 1 1.9401 -7.0965 4.4984
41 1 2.7271 -5.7260 2.1954
42 1 4.5447 -4.3563 1.3094
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001156489329.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:55
Heat of formation + Delta-G solvation = -0.889953 kcal
Electronic energy + Delta-G solvation = -28486.586370 eV
Core-core repulsion = 24558.787681 eV
Total energy + Delta-G solvation = -3927.798689 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-39.75365 -38.53884 -36.83811 -35.96026 -35.64512 -34.44530 -33.84007 -30.89505
-30.51882 -30.00757 -29.36827 -27.93500 -26.09132 -24.94927 -22.81409 -21.62379
-21.45267 -21.27251 -18.96027 -17.99781 -17.49451 -16.53842 -16.30925 -15.99207
-15.87013 -15.46252 -15.14017 -14.92462 -14.76266 -14.42211 -14.27056 -13.69175
-13.38192 -13.29300 -13.14964 -12.91724 -12.60720 -12.56383 -12.34984 -12.25804
-11.99784 -11.82520 -11.66794 -11.53694 -11.36865 -11.23406 -11.11058 -10.99794
-10.81531 -10.47087 -10.19476 -9.93993 -9.55096 -8.81717 -8.57695 -8.38966
-8.18421 -7.89153 -7.70560 -6.96059 -4.75917 0.37174 1.47204 1.63043
2.44749 2.64001 2.72683 2.95011 2.96912 3.10671 3.75627 3.86144
4.08006 4.31990 4.47954 4.70003 4.81447 4.85874 4.97292 5.01322
5.10238 5.27658 5.35559 5.43864 5.56465 5.67675 5.76209 5.80876
5.86507 6.12283 6.22970 6.47533 6.53530 6.61583 6.67094 6.70221
6.75049 6.81821 6.96972 7.05409 7.19642 7.27160 7.37999 7.43880
7.70785 7.95345 8.28422 8.55568 8.58610 9.40069 9.95737
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.010119 B = 0.004152 C = 0.003527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2766.544322 B = 6741.405120 C = 7936.443747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.676 4.676
2 S 2.599 3.401
3 O -0.949 6.949
4 O -0.929 6.929
5 N -0.879 5.879
6 C 0.181 3.819
7 C -0.143 4.143
8 C -0.098 4.098
9 C -0.132 4.132
10 C -0.071 4.071
11 C 0.103 3.897
12 N -0.844 5.844
13 C -0.091 4.091
14 C 0.330 3.670
15 C -0.256 4.256
16 C 0.134 3.866
17 C -0.453 4.453
18 H 0.083 0.917
19 C 0.077 3.923
20 N -0.786 5.786
21 Si 0.915 3.085
22 H -0.262 1.262
23 H -0.276 1.276
24 H -0.264 1.264
25 C -0.195 4.195
26 C 0.100 3.900
27 N -0.552 5.552
28 H 0.127 0.873
29 H 0.128 0.872
30 H 0.137 0.863
31 H 0.117 0.883
32 H 0.125 0.875
33 H 0.117 0.883
34 H 0.035 0.965
35 H 0.082 0.918
36 H 0.341 0.659
37 H 0.341 0.659
38 H 0.135 0.865
39 H 0.106 0.894
40 H 0.286 0.714
41 H 0.131 0.869
42 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.377 11.056 2.468 11.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.825 4.825
2 S 2.694 3.306
3 O -0.939 6.939
4 O -0.919 6.919
5 N -0.702 5.702
6 C 0.087 3.913
7 C -0.164 4.164
8 C -0.116 4.116
9 C -0.152 4.152
10 C -0.072 4.072
11 C -0.027 4.027
12 N -0.374 5.374
13 C -0.113 4.113
14 C 0.105 3.895
15 C -0.283 4.283
16 C 0.125 3.875
17 C -0.484 4.484
18 H 0.101 0.899
19 C -0.143 4.143
20 N -0.411 5.411
21 Si 0.739 3.261
22 H -0.186 1.186
23 H -0.201 1.201
24 H -0.188 1.188
25 C -0.218 4.218
26 C -0.052 4.052
27 N -0.269 5.269
28 H 0.146 0.854
29 H 0.146 0.854
30 H 0.155 0.845
31 H 0.135 0.865
32 H 0.143 0.857
33 H 0.135 0.865
34 H 0.053 0.947
35 H 0.100 0.900
36 H 0.153 0.847
37 H 0.154 0.846
38 H 0.152 0.848
39 H 0.124 0.876
40 H 0.097 0.903
41 H 0.149 0.851
42 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 0.002 11.105 0.870 11.139
hybrid contribution -1.978 -0.740 1.814 2.784
sum -1.976 10.365 2.684 10.887
Atomic orbital electron populations
1.30662 1.28433 1.12341 1.11110 1.05467 0.77926 0.74129 0.73058
1.93609 1.77593 1.37399 1.85318 1.93646 1.76853 1.61006 1.60420
1.52841 1.80759 1.10471 1.26147 1.17329 0.93540 0.90442 0.90005
1.20965 0.98231 0.97762 0.99489 1.20749 0.97342 0.98589 0.94947
1.20900 0.95007 0.98622 1.00660 1.19590 0.95681 0.95584 0.96338
1.20687 0.88964 0.99266 0.93761 1.58656 1.05927 1.15042 1.57728
1.21094 0.95355 0.99778 0.95072 1.17250 0.91429 0.80644 1.00157
1.21817 0.98949 0.94913 1.12654 1.17706 0.92902 0.89806 0.87043
1.19558 0.94271 1.04566 1.30032 0.89922 1.25958 0.96869 0.97917
0.93522 1.69720 1.21302 1.23655 1.26463 0.86239 0.81068 0.79205
0.79557 1.18611 1.20102 1.18841 1.22102 0.95108 1.01327 1.03233
1.21569 0.98107 0.88329 0.97176 1.66810 1.25041 1.11744 1.23283
0.85447 0.85371 0.84457 0.86541 0.85700 0.86461 0.94684 0.89964
0.84672 0.84634 0.84754 0.87591 0.90323 0.85099 0.85532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.68 -8.30 10.85 101.05 1.10 -7.21 16
2 S 2.60 46.08 5.55 -107.50 -0.60 45.49 16
3 O -0.95 -17.95 16.61 -57.54 -0.96 -18.91 16
4 O -0.93 -20.01 17.30 -57.54 -1.00 -21.01 16
5 N -0.88 -17.25 2.92 -10.02 -0.03 -17.28 16
6 C 0.18 3.32 5.15 -83.75 -0.43 2.89 16
7 C -0.14 -2.18 8.86 -39.38 -0.35 -2.53 16
8 C -0.10 -1.27 10.04 -39.61 -0.40 -1.67 16
9 C -0.13 -1.71 9.70 -39.54 -0.38 -2.10 16
10 C -0.07 -1.06 5.39 -104.65 -0.56 -1.62 16
11 C 0.10 1.29 6.91 -4.97 -0.03 1.25 16
12 N -0.84 -9.61 9.61 -11.40 -0.11 -9.72 16
13 C -0.09 -1.67 9.15 -39.38 -0.36 -2.03 16
14 C 0.33 7.46 4.93 -154.89 -0.76 6.70 16
15 C -0.26 -5.87 9.83 -38.43 -0.38 -6.25 16
16 C 0.13 3.33 5.58 -106.55 -0.59 2.73 16
17 C -0.45 -11.01 9.12 -37.65 -0.34 -11.35 16
18 H 0.08 1.90 7.88 -52.49 -0.41 1.48 16
19 C 0.08 1.78 5.25 -17.34 -0.09 1.69 16
20 N -0.79 -18.73 10.89 55.55 0.60 -18.12 16
21 Si 0.92 17.21 29.58 -169.99 -5.03 12.18 16
22 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16
23 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16
24 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16
25 C -0.20 -4.77 8.72 -39.06 -0.34 -5.11 16
26 C 0.10 2.33 11.10 -18.05 -0.20 2.13 16
27 N -0.55 -13.32 10.30 -12.80 -0.13 -13.45 16
28 H 0.13 1.25 6.62 -51.93 -0.34 0.91 16
29 H 0.13 1.24 8.14 -51.92 -0.42 0.81 16
30 H 0.14 1.71 8.14 -51.92 -0.42 1.29 16
31 H 0.12 1.46 6.19 -52.49 -0.32 1.14 16
32 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16
33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16
34 H 0.04 0.36 8.08 -51.93 -0.42 -0.05 16
35 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16
36 H 0.34 3.45 8.98 -39.29 -0.35 3.10 16
37 H 0.34 3.03 9.08 -39.29 -0.36 2.68 16
38 H 0.13 2.74 7.88 -52.49 -0.41 2.32 16
39 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16
40 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16
41 H 0.13 3.22 6.26 -52.49 -0.33 2.89 16
42 H 0.13 2.60 8.06 -52.48 -0.42 2.18 16
LS Contribution 370.51 15.07 5.58 5.58
Total: -1.00 -31.98 370.51 -10.84 -42.82
By element:
Atomic # 1 Polarization: 19.94 SS G_CDS: -5.04 Total: 14.90 kcal
Atomic # 6 Polarization: -18.35 SS G_CDS: -4.13 Total: -22.48 kcal
Atomic # 7 Polarization: -58.90 SS G_CDS: 0.33 Total: -58.57 kcal
Atomic # 8 Polarization: -37.97 SS G_CDS: -1.95 Total: -39.92 kcal
Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal
Atomic # 16 Polarization: 46.08 SS G_CDS: -0.60 Total: 45.49 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -31.98 -10.84 -42.82 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001156489329.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.926 kcal
(2) G-P(sol) polarization free energy of solvation -31.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.947 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.890 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds