Wall clock time and date at job start Wed Apr 1 2020 04:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42105 * 110.53828 * 2 1 4 4 O 1.42094 * 110.54207 * 223.24945 * 2 1 3 5 5 N 1.65602 * 104.44719 * 111.62009 * 2 1 3 6 6 C 1.39752 * 120.00003 * 266.30344 * 5 2 1 7 7 C 1.38929 * 120.07560 * 49.91786 * 6 5 2 8 8 C 1.38079 * 119.92292 * 179.74297 * 7 6 5 9 9 C 1.38309 * 120.07782 * 0.55799 * 8 7 6 10 10 C 1.38268 * 120.14615 * 359.69326 * 9 8 7 11 11 C 1.50704 * 119.96217 * 180.02562 * 10 9 8 12 12 N 1.46904 * 109.46803 * 269.97786 * 11 10 9 13 13 C 1.38121 * 120.07693 * 0.02562 * 10 9 8 14 14 C 1.39158 * 119.99519 * 86.30692 * 5 2 1 15 15 C 1.38746 * 119.65633 * 264.89654 * 14 5 2 16 16 C 1.40785 * 118.67022 * 180.28098 * 15 14 5 17 17 C 1.41549 * 120.99689 * 179.70590 * 16 15 14 18 18 H 1.07998 * 120.00083 * 26.44007 * 17 16 15 19 19 C 1.40030 * 119.99888 * 206.44579 * 17 16 15 20 20 N 1.30740 * 120.00092 * 12.92461 * 19 17 16 21 21 Si 1.86800 * 119.99764 * 192.92018 * 19 17 16 22 22 H 1.48497 * 109.47027 * 60.00273 * 21 19 17 23 23 H 1.48501 * 109.46835 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47381 * 300.00111 * 21 19 17 25 25 C 1.41195 * 118.00821 * 359.46331 * 16 15 14 26 26 C 1.36563 * 119.14541 * 0.51614 * 25 16 15 27 27 N 1.32076 * 121.27099 * 359.74586 * 26 25 16 28 28 H 1.08996 * 109.47347 * 316.75305 * 1 2 3 29 29 H 1.08999 * 109.46889 * 76.75711 * 1 2 3 30 30 H 1.09003 * 109.46946 * 196.74853 * 1 2 3 31 31 H 1.08001 * 120.04279 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.96192 * 180.27357 * 8 7 6 33 33 H 1.08001 * 119.93060 * 179.72115 * 9 8 7 34 34 H 1.08999 * 109.46978 * 29.97424 * 11 10 9 35 35 H 1.08998 * 109.47126 * 149.97964 * 11 10 9 36 36 H 1.00900 * 110.99758 * 56.04602 * 12 11 10 37 37 H 1.00908 * 110.99525 * 179.97438 * 12 11 10 38 38 H 1.07999 * 120.04098 * 180.02562 * 13 10 9 39 39 H 1.08002 * 120.66651 * 0.02562 * 15 14 5 40 40 H 0.96995 * 120.00160 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.42317 * 180.29395 * 25 16 15 42 42 H 1.08003 * 119.36329 * 179.76592 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.4771 0.2898 2.5468 7 6 1.5696 1.2998 2.8406 8 6 1.8171 2.1649 3.8880 9 6 2.9724 2.0340 4.6370 10 6 3.8802 1.0331 4.3440 11 6 5.1375 0.8938 5.1631 12 7 6.2065 1.7014 4.5605 13 6 3.6361 0.1607 3.3013 14 6 2.3256 -1.9643 1.6920 15 6 1.2401 -2.6632 2.2002 16 6 1.3644 -4.0511 2.4011 17 6 0.2904 -4.8112 2.9228 18 1 -0.7267 -4.4767 2.7814 19 6 0.5466 -5.9969 3.6224 20 7 1.7625 -6.2750 4.0142 21 14 -0.8489 -7.1812 3.9958 22 1 -1.4621 -7.6405 2.7238 23 1 -0.3189 -8.3517 4.7403 24 1 -1.8750 -6.4931 4.8198 25 6 2.5908 -4.6629 2.0617 26 6 3.6039 -3.8926 1.5666 27 7 3.4551 -2.5914 1.3957 28 1 -0.3634 0.7485 0.7041 29 1 -0.3633 0.2354 -1.0003 30 1 -0.3633 -0.9841 0.2962 31 1 0.6697 1.4060 2.2529 32 1 1.1098 2.9476 4.1198 33 1 3.1657 2.7147 5.4529 34 1 4.9493 1.2404 6.1793 35 1 5.4419 -0.1525 5.1865 36 1 5.9231 2.6654 4.4683 37 1 7.0607 1.6251 5.0922 38 1 4.3454 -0.6211 3.0732 39 1 0.3196 -2.1521 2.4408 40 1 1.9401 -7.0965 4.4984 41 1 2.7271 -5.7260 2.1954 42 1 4.5447 -4.3563 1.3094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156489329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:54 Heat of formation + Delta-G solvation = -24.275181 kcal Electronic energy + Delta-G solvation = -28487.600430 eV Core-core repulsion = 24558.787681 eV Total energy + Delta-G solvation = -3928.812749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12348 -40.08012 -38.26947 -37.36135 -37.08933 -35.92192 -35.19563 -32.69905 -31.63350 -31.44473 -30.44085 -29.43601 -27.90795 -25.99770 -24.24195 -23.41194 -22.90868 -22.45673 -20.46925 -19.50602 -18.79568 -18.14818 -17.66179 -17.24383 -17.06724 -16.90596 -16.56503 -16.39506 -16.11937 -16.02670 -15.44969 -15.01186 -14.70934 -14.46252 -14.29934 -14.24010 -14.10313 -13.91849 -13.69876 -13.48148 -13.35645 -13.29410 -13.15626 -13.08998 -12.93967 -12.80613 -12.39705 -12.26399 -12.05384 -11.98362 -11.90663 -11.35436 -11.19264 -10.06464 -10.00884 -9.83283 -9.62891 -9.58193 -9.17317 -8.70329 -6.61410 -0.93443 0.31998 0.45532 0.68378 0.89814 1.33589 1.41728 1.53173 1.56558 2.18444 2.66925 2.73194 2.80641 3.06475 3.46811 3.72783 3.78484 3.86875 3.93605 4.01121 4.05226 4.13165 4.24065 4.37008 4.42011 4.58909 4.67645 4.75100 4.77825 4.82110 4.88990 4.93633 5.09852 5.18149 5.23371 5.40324 5.42091 5.51981 5.65492 5.69753 5.87621 6.08815 6.18322 6.21492 6.46365 6.62243 6.73185 6.76604 7.60090 8.23826 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.004152 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.544322 B = 6741.405120 C = 7936.443747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.584 3.416 3 O -0.969 6.969 4 O -0.984 6.984 5 N -0.885 5.885 6 C 0.147 3.853 7 C -0.152 4.152 8 C -0.090 4.090 9 C -0.124 4.124 10 C -0.077 4.077 11 C 0.106 3.894 12 N -0.856 5.856 13 C -0.129 4.129 14 C 0.339 3.661 15 C -0.265 4.265 16 C 0.109 3.891 17 C -0.477 4.477 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.815 5.815 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.256 1.256 25 C -0.216 4.216 26 C 0.092 3.908 27 N -0.581 5.581 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.350 0.650 37 H 0.354 0.646 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.293 0.707 41 H 0.122 0.878 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 13.162 3.957 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.685 3.315 3 O -0.960 6.960 4 O -0.974 6.974 5 N -0.708 5.708 6 C 0.054 3.946 7 C -0.173 4.173 8 C -0.108 4.108 9 C -0.143 4.143 10 C -0.078 4.078 11 C -0.024 4.024 12 N -0.389 5.389 13 C -0.151 4.151 14 C 0.114 3.886 15 C -0.292 4.292 16 C 0.100 3.900 17 C -0.508 4.508 18 H 0.110 0.890 19 C -0.179 4.179 20 N -0.440 5.440 21 Si 0.809 3.191 22 H -0.182 1.182 23 H -0.194 1.194 24 H -0.180 1.180 25 C -0.238 4.238 26 C -0.059 4.059 27 N -0.298 5.298 28 H 0.182 0.818 29 H 0.182 0.818 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.187 0.813 33 H 0.174 0.826 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.112 0.888 39 H 0.145 0.855 40 H 0.104 0.896 41 H 0.140 0.860 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.971 13.239 2.370 13.773 hybrid contribution -1.016 -1.257 1.383 2.127 sum -3.987 11.982 3.754 13.174 Atomic orbital electron populations 1.30391 1.20705 1.14027 1.14629 1.05694 0.80834 0.73009 0.71951 1.93568 1.79786 1.37446 1.85184 1.93579 1.79772 1.62169 1.61914 1.52845 1.81825 1.09155 1.26984 1.17687 0.94703 0.91764 0.90412 1.21370 0.98501 0.96942 1.00469 1.21331 0.97767 0.98388 0.93284 1.21362 0.94069 0.97797 1.01107 1.19895 0.97094 0.95387 0.95461 1.20628 0.88426 0.98511 0.94836 1.58569 1.06350 1.15549 1.58415 1.21048 0.95693 1.00664 0.97737 1.17431 0.90645 0.82119 0.98391 1.21997 0.99896 0.94433 1.12836 1.18096 0.93351 0.90982 0.87535 1.19900 0.94520 1.05707 1.30657 0.88966 1.26862 0.99355 0.99002 0.92726 1.69785 1.23287 1.24368 1.26596 0.85132 0.77689 0.76818 0.79441 1.18231 1.19389 1.18012 1.22061 0.95879 1.00973 1.04912 1.21864 0.98721 0.88500 0.96805 1.66917 1.26341 1.12027 1.24497 0.81837 0.81772 0.84002 0.83843 0.81298 0.82550 0.91789 0.92128 0.83648 0.83107 0.88757 0.85472 0.89572 0.85992 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -13.51 10.85 113.37 1.23 -12.28 16 2 S 2.58 91.59 5.55 -56.49 -0.31 91.27 16 3 O -0.97 -36.59 16.61 -127.65 -2.12 -38.71 16 4 O -0.98 -44.16 17.30 -127.65 -2.21 -46.37 16 5 N -0.89 -35.55 2.92 -185.63 -0.54 -36.09 16 6 C 0.15 5.46 5.15 38.20 0.20 5.66 16 7 C -0.15 -4.26 8.86 22.40 0.20 -4.06 16 8 C -0.09 -1.97 10.04 22.25 0.22 -1.75 16 9 C -0.12 -2.82 9.70 22.29 0.22 -2.60 16 10 C -0.08 -2.28 5.39 -19.88 -0.11 -2.39 16 11 C 0.11 2.62 6.91 85.56 0.59 3.21 16 12 N -0.86 -19.09 9.61 -190.00 -1.83 -20.91 16 13 C -0.13 -4.98 9.15 22.40 0.20 -4.78 16 14 C 0.34 16.00 4.93 132.87 0.65 16.65 16 15 C -0.26 -12.46 9.83 23.01 0.23 -12.23 16 16 C 0.11 5.60 5.58 -21.11 -0.12 5.48 16 17 C -0.48 -23.46 9.12 23.52 0.21 -23.24 16 18 H 0.09 4.20 7.88 -2.91 -0.02 4.18 16 19 C 0.04 1.75 5.25 85.29 0.45 2.20 16 20 N -0.82 -39.65 10.89 21.84 0.24 -39.41 16 21 Si 0.99 34.64 29.58 68.60 2.03 36.67 16 22 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 23 H -0.27 -9.05 7.11 99.48 0.71 -8.35 16 24 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 25 C -0.22 -11.14 8.72 22.60 0.20 -10.94 16 26 C 0.09 4.62 11.10 84.26 0.94 5.55 16 27 N -0.58 -29.85 10.30 -194.41 -2.00 -31.85 16 28 H 0.16 2.34 6.62 -2.39 -0.02 2.32 16 29 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.14 3.04 6.19 -2.91 -0.02 3.02 16 32 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 34 H 0.06 1.19 8.08 -2.39 -0.02 1.18 16 35 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 36 H 0.35 6.58 8.98 -89.69 -0.81 5.78 16 37 H 0.35 6.09 9.08 -89.69 -0.81 5.27 16 38 H 0.09 4.27 7.88 -2.91 -0.02 4.25 16 39 H 0.13 5.22 8.06 -2.91 -0.02 5.20 16 40 H 0.29 12.88 8.29 -92.71 -0.77 12.11 16 41 H 0.12 6.37 6.26 -2.91 -0.02 6.35 16 42 H 0.14 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -75.71 370.51 -1.97 -77.69 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -0.54 Total: 43.23 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 5.31 Total: -35.52 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -4.13 Total: -128.27 kcal Atomic # 8 Polarization: -80.75 SS G_CDS: -4.33 Total: -85.08 kcal Atomic # 14 Polarization: 34.64 SS G_CDS: 2.03 Total: 36.67 kcal Atomic # 16 Polarization: 91.59 SS G_CDS: -0.31 Total: 91.27 kcal Total: -75.71 -1.97 -77.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156489329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.411 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds