Wall clock time and date at job start Wed Apr 1 2020 04:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47151 * 2 1 4 4 C 1.34224 * 117.00349 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99850 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00299 * 180.02562 * 4 3 2 7 7 N 1.46503 * 109.47115 * 179.97438 * 6 4 3 8 8 C 1.46502 * 119.99487 * 269.99702 * 7 6 4 9 9 C 1.50701 * 109.46886 * 270.00028 * 8 7 6 10 10 H 1.08007 * 120.00306 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00088 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99798 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00048 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47345 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47426 * 119.99729 * 13 11 9 16 16 H 1.48506 * 109.46818 * 239.99421 * 13 11 9 17 17 C 1.38619 * 120.00386 * 89.99668 * 7 6 4 18 18 C 1.39255 * 120.47351 * 4.99744 * 17 7 6 19 19 C 1.39607 * 118.20164 * 179.97438 * 18 17 7 20 20 C 1.47576 * 120.53906 * 180.02562 * 19 18 17 21 21 C 1.34951 * 125.27655 * 180.02562 * 20 19 18 22 22 C 1.37757 * 114.72006 * 180.02562 * 21 20 19 23 23 C 1.33762 * 115.08020 * 359.97438 * 22 21 20 24 24 S 1.75869 * 109.75080 * 359.97438 * 23 22 21 25 25 N 1.33640 * 118.92188 * 0.27755 * 19 18 17 26 26 C 1.31596 * 120.83234 * 359.43518 * 25 19 18 27 27 N 1.31808 * 121.99803 * 0.58251 * 26 25 19 28 28 H 1.08998 * 109.47338 * 59.99853 * 1 2 3 29 29 H 1.09003 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46926 * 299.99862 * 1 2 3 31 31 H 1.08999 * 109.46926 * 240.00138 * 2 1 3 32 32 H 1.08998 * 109.47338 * 120.00147 * 2 1 3 33 33 H 1.08991 * 109.47642 * 59.99230 * 6 4 3 34 34 H 1.09000 * 109.46433 * 299.98778 * 6 4 3 35 35 H 1.08996 * 109.47536 * 29.99903 * 8 7 6 36 36 H 1.08996 * 109.46954 * 150.00176 * 8 7 6 37 37 H 0.97003 * 120.00151 * 180.02562 * 12 11 9 38 38 H 1.08006 * 120.89587 * 359.97438 * 18 17 7 39 39 H 1.08000 * 122.63791 * 359.97438 * 21 20 19 40 40 H 1.08002 * 122.45919 * 179.97438 * 22 21 20 41 41 H 1.07999 * 125.12868 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.00238 * 180.26826 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3837 2.8608 -0.0001 8 6 6.1152 2.8220 1.2686 9 6 6.4403 4.2276 1.7041 10 1 6.1325 5.0661 1.0968 11 6 7.1308 4.4434 2.8779 12 7 7.5052 3.4226 3.6176 13 14 7.5332 6.1857 3.4181 14 1 7.0049 7.1484 2.4184 15 1 6.9092 6.4510 4.7392 16 1 9.0060 6.3428 3.5258 17 6 6.0758 2.8250 -1.2006 18 6 5.3999 2.9656 -2.4100 19 6 6.1439 2.9227 -3.5905 20 6 5.4803 3.0667 -4.9007 21 6 6.1038 3.0396 -6.0973 22 6 5.2718 3.1960 -7.1841 23 6 3.9763 3.3499 -6.8888 24 16 3.7540 3.2993 -5.1450 25 7 7.4662 2.7440 -3.5150 26 6 8.0647 2.6211 -2.3494 27 7 7.3963 2.6562 -1.2139 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5851 3.4692 0.8903 34 1 3.5844 3.4700 -0.8896 35 1 5.5001 2.3395 2.0281 36 1 7.0394 2.2592 1.1381 37 1 7.9906 3.5743 4.4436 38 1 4.3290 3.1040 -2.4339 39 1 7.1711 2.9067 -6.1951 40 1 5.6386 3.1944 -8.1999 41 1 3.1857 3.4842 -7.6123 42 1 9.1354 2.4821 -2.3227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:48 Heat of formation + Delta-G solvation = 11.272370 kcal Electronic energy + Delta-G solvation = -27536.857985 eV Core-core repulsion = 23609.586694 eV Total energy + Delta-G solvation = -3927.271291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61974 -40.07240 -37.83010 -37.00552 -35.88948 -33.22074 -32.85780 -31.86668 -31.08779 -29.20334 -28.58643 -26.51978 -24.75302 -23.84411 -23.05257 -23.02019 -21.54209 -20.57420 -19.19087 -18.02410 -17.68636 -16.98199 -16.65778 -16.44014 -16.26917 -15.85912 -15.32937 -15.13145 -14.70450 -14.48294 -14.28678 -14.07583 -13.54973 -13.39940 -13.08292 -12.99518 -12.86201 -12.60516 -12.44017 -12.29765 -12.14114 -11.68866 -11.62412 -11.34064 -11.22720 -10.98934 -10.77307 -10.69681 -10.49751 -10.33200 -10.25834 -10.07450 -9.94017 -9.43292 -8.66109 -8.60775 -8.48902 -8.41099 -7.37204 -6.09584 -4.16441 0.41528 1.42562 1.61928 1.85642 1.91789 2.41477 2.65831 2.83970 3.25766 3.33926 3.36872 3.51070 4.30506 4.36996 4.45683 4.71499 4.81626 4.84655 4.90714 4.95659 4.98783 5.19270 5.22040 5.23468 5.29009 5.35310 5.50282 5.56689 5.61018 5.66965 5.74085 5.81829 5.84234 6.06033 6.21378 6.36379 6.50235 6.56353 6.88197 7.32339 7.47646 7.73815 7.87632 7.95336 8.04539 8.13741 8.78593 8.89483 9.48536 10.97346 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007654 B = 0.004095 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.411938 B = 6836.309672 C = 9465.517421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.436 3.564 5 O -0.491 6.491 6 C 0.133 3.867 7 N -0.558 5.558 8 C 0.254 3.746 9 C -0.530 4.530 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.890 5.890 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.464 3.536 18 C -0.301 4.301 19 C 0.263 3.737 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.139 4.139 23 C -0.213 4.213 24 S 0.131 5.869 25 N -0.568 5.568 26 C 0.342 3.658 27 N -0.549 5.549 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.030 0.970 36 H 0.057 0.943 37 H 0.264 0.736 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.123 -2.570 -16.392 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.276 3.724 5 O -0.376 6.376 6 C 0.006 3.994 7 N -0.266 5.266 8 C 0.136 3.864 9 C -0.569 4.569 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.221 3.779 18 C -0.331 4.331 19 C 0.120 3.880 20 C -0.261 4.261 21 C -0.125 4.125 22 C -0.169 4.169 23 C -0.350 4.350 24 S 0.396 5.604 25 N -0.289 5.289 26 C 0.051 3.949 27 N -0.271 5.271 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.150 0.850 34 H 0.128 0.872 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.147 0.853 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.184 0.816 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -12.233 -2.958 -14.979 19.565 hybrid contribution 0.625 0.684 -0.478 1.043 sum -11.608 -2.274 -15.457 19.464 Atomic orbital electron populations 1.21791 0.92769 1.02737 1.03471 1.22971 0.95149 0.80706 1.02519 1.86501 1.24826 1.32091 1.84479 1.24913 0.80480 0.94129 0.72882 1.90694 1.60269 1.42814 1.43800 1.20935 0.81720 0.89903 1.06883 1.46804 1.02455 1.71845 1.05452 1.19471 0.92654 0.97704 0.76575 1.21442 1.36824 0.92150 1.06483 0.92295 1.24907 0.95362 0.97258 0.96274 1.69950 1.38663 1.29999 1.14261 0.86451 0.78271 0.84364 0.78371 1.19809 1.20950 1.20839 1.18271 0.88470 0.85450 0.85685 1.21937 1.01241 1.17225 0.92723 1.18633 0.89412 0.90631 0.89319 1.22603 0.96125 1.12074 0.95330 1.20466 1.02050 0.99917 0.90082 1.20133 0.92519 1.03899 1.00382 1.25866 1.00795 1.09890 0.98449 1.84180 1.04402 1.70448 1.01396 1.68368 1.09049 1.21500 1.30005 1.24607 1.00255 0.88521 0.81494 1.68090 1.06959 1.20693 1.31394 0.91541 0.90486 0.91429 0.91506 0.91305 0.84953 0.87209 0.95180 0.92499 0.92666 0.85262 0.83087 0.83992 0.81647 0.78984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.36 -5.14 10.22 -39.24 -0.40 -5.54 16 4 C 0.44 7.43 8.03 36.01 0.29 7.72 16 5 O -0.49 -10.14 16.18 -18.76 -0.30 -10.44 16 6 C 0.13 2.20 5.86 -5.19 -0.03 2.17 16 7 N -0.56 -11.82 2.05 -176.46 -0.36 -12.19 16 8 C 0.25 6.48 5.23 -5.19 -0.03 6.45 16 9 C -0.53 -14.30 9.39 -34.44 -0.32 -14.62 16 10 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 13 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.46 9.72 7.39 -154.72 -1.14 8.57 16 18 C -0.30 -5.38 8.87 -38.69 -0.34 -5.73 16 19 C 0.26 4.52 6.77 -82.76 -0.56 3.96 16 20 C -0.14 -2.05 6.38 -36.94 -0.24 -2.28 16 21 C -0.09 -1.15 9.86 -40.92 -0.40 -1.56 16 22 C -0.14 -1.37 10.16 -41.33 -0.42 -1.79 16 23 C -0.21 -1.99 11.23 29.16 0.33 -1.66 16 24 S 0.13 1.49 22.34 -107.50 -2.40 -0.91 16 25 N -0.57 -10.04 10.10 -11.28 -0.11 -10.15 16 26 C 0.34 6.25 12.27 -92.31 -1.13 5.11 16 27 N -0.55 -11.93 9.22 -13.89 -0.13 -12.06 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 33 H 0.13 2.04 8.07 -51.93 -0.42 1.62 16 34 H 0.11 1.48 6.05 -51.93 -0.31 1.17 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.06 1.62 7.33 -51.93 -0.38 1.24 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.13 2.00 5.48 -52.48 -0.29 1.71 16 39 H 0.15 1.83 8.00 -52.49 -0.42 1.41 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.19 2.81 8.06 -52.49 -0.42 2.38 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -33.51 381.61 -10.90 -44.41 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.17 Total: 1.84 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -3.49 Total: 8.11 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.13 Total: -59.40 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.70 Total: -15.98 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.40 Total: -0.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.51 -10.90 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.682 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds