Wall clock time and date at job start Wed Apr 1 2020 04:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47151 * 2 1 4 4 C 1.34224 * 117.00349 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99850 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00299 * 180.02562 * 4 3 2 7 7 N 1.46503 * 109.47115 * 179.97438 * 6 4 3 8 8 C 1.46502 * 119.99487 * 269.99702 * 7 6 4 9 9 C 1.50701 * 109.46886 * 270.00028 * 8 7 6 10 10 H 1.08007 * 120.00306 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00088 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99798 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00048 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47345 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47426 * 119.99729 * 13 11 9 16 16 H 1.48506 * 109.46818 * 239.99421 * 13 11 9 17 17 C 1.38619 * 120.00386 * 89.99668 * 7 6 4 18 18 C 1.39255 * 120.47351 * 4.99744 * 17 7 6 19 19 C 1.39607 * 118.20164 * 179.97438 * 18 17 7 20 20 C 1.47576 * 120.53906 * 180.02562 * 19 18 17 21 21 C 1.34951 * 125.27655 * 180.02562 * 20 19 18 22 22 C 1.37757 * 114.72006 * 180.02562 * 21 20 19 23 23 C 1.33762 * 115.08020 * 359.97438 * 22 21 20 24 24 S 1.75869 * 109.75080 * 359.97438 * 23 22 21 25 25 N 1.33640 * 118.92188 * 0.27755 * 19 18 17 26 26 C 1.31596 * 120.83234 * 359.43518 * 25 19 18 27 27 N 1.31808 * 121.99803 * 0.58251 * 26 25 19 28 28 H 1.08998 * 109.47338 * 59.99853 * 1 2 3 29 29 H 1.09003 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46926 * 299.99862 * 1 2 3 31 31 H 1.08999 * 109.46926 * 240.00138 * 2 1 3 32 32 H 1.08998 * 109.47338 * 120.00147 * 2 1 3 33 33 H 1.08991 * 109.47642 * 59.99230 * 6 4 3 34 34 H 1.09000 * 109.46433 * 299.98778 * 6 4 3 35 35 H 1.08996 * 109.47536 * 29.99903 * 8 7 6 36 36 H 1.08996 * 109.46954 * 150.00176 * 8 7 6 37 37 H 0.97003 * 120.00151 * 180.02562 * 12 11 9 38 38 H 1.08006 * 120.89587 * 359.97438 * 18 17 7 39 39 H 1.08000 * 122.63791 * 359.97438 * 21 20 19 40 40 H 1.08002 * 122.45919 * 179.97438 * 22 21 20 41 41 H 1.07999 * 125.12868 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.00238 * 180.26826 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3837 2.8608 -0.0001 8 6 6.1152 2.8220 1.2686 9 6 6.4403 4.2276 1.7041 10 1 6.1325 5.0661 1.0968 11 6 7.1308 4.4434 2.8779 12 7 7.5052 3.4226 3.6176 13 14 7.5332 6.1857 3.4181 14 1 7.0049 7.1484 2.4184 15 1 6.9092 6.4510 4.7392 16 1 9.0060 6.3428 3.5258 17 6 6.0758 2.8250 -1.2006 18 6 5.3999 2.9656 -2.4100 19 6 6.1439 2.9227 -3.5905 20 6 5.4803 3.0667 -4.9007 21 6 6.1038 3.0396 -6.0973 22 6 5.2718 3.1960 -7.1841 23 6 3.9763 3.3499 -6.8888 24 16 3.7540 3.2993 -5.1450 25 7 7.4662 2.7440 -3.5150 26 6 8.0647 2.6211 -2.3494 27 7 7.3963 2.6562 -1.2139 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5851 3.4692 0.8903 34 1 3.5844 3.4700 -0.8896 35 1 5.5001 2.3395 2.0281 36 1 7.0394 2.2592 1.1381 37 1 7.9906 3.5743 4.4436 38 1 4.3290 3.1040 -2.4339 39 1 7.1711 2.9067 -6.1951 40 1 5.6386 3.1944 -8.1999 41 1 3.1857 3.4842 -7.6123 42 1 9.1354 2.4821 -2.3227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:47 Heat of formation + Delta-G solvation = -6.078270 kcal Electronic energy + Delta-G solvation = -27537.610365 eV Core-core repulsion = 23609.586694 eV Total energy + Delta-G solvation = -3928.023672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02789 -41.41372 -38.84524 -38.30355 -37.33807 -34.90871 -34.54171 -32.85317 -32.47967 -30.66187 -29.83494 -28.18386 -26.01955 -25.11855 -24.63762 -24.08165 -22.86878 -21.89183 -20.21161 -19.28951 -19.05116 -18.55426 -18.21469 -17.80304 -17.57063 -17.15815 -16.64726 -16.41484 -16.25662 -15.91399 -15.57677 -15.34648 -15.01826 -14.73076 -14.27565 -14.11727 -14.02351 -13.64075 -13.53372 -13.41363 -13.28783 -13.11941 -12.97171 -12.81250 -12.62171 -12.54108 -12.44771 -12.19453 -11.89907 -11.71005 -11.57494 -11.56158 -11.48164 -11.09717 -10.63452 -10.13064 -9.47559 -9.44904 -8.98894 -8.18061 -6.35138 -0.64519 0.22892 0.53003 0.71774 1.01577 1.05962 1.37246 1.39837 1.42900 1.53395 1.87925 2.06195 2.40069 3.02897 3.09225 3.11391 3.36091 3.60682 3.67643 3.89425 3.97180 4.04091 4.07877 4.21125 4.24241 4.29871 4.31907 4.47863 4.64047 4.73105 4.79591 4.87761 4.92719 5.11104 5.15874 5.16985 5.31020 5.38872 5.46106 5.50442 5.64382 5.76662 6.04404 6.19947 6.40231 6.67744 6.75864 7.32656 7.38312 8.87184 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007654 B = 0.004095 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.411938 B = 6836.309672 C = 9465.517421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.352 6.352 4 C 0.444 3.556 5 O -0.534 6.534 6 C 0.129 3.871 7 N -0.571 5.571 8 C 0.278 3.722 9 C -0.535 4.535 10 H 0.058 0.942 11 C 0.013 3.987 12 N -0.927 5.927 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.273 1.273 16 H -0.283 1.283 17 C 0.443 3.557 18 C -0.303 4.303 19 C 0.265 3.735 20 C -0.194 4.194 21 C -0.080 4.080 22 C -0.150 4.150 23 C -0.185 4.185 24 S 0.136 5.864 25 N -0.569 5.569 26 C 0.337 3.663 27 N -0.597 5.597 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.007 0.993 36 H 0.016 0.984 37 H 0.266 0.734 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.174 0.826 41 H 0.204 0.796 42 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.337 -1.171 -19.214 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.268 6.268 4 C 0.286 3.714 5 O -0.423 6.423 6 C 0.004 3.996 7 N -0.280 5.280 8 C 0.158 3.842 9 C -0.573 4.573 10 H 0.076 0.924 11 C -0.186 4.186 12 N -0.567 5.567 13 Si 0.792 3.208 14 H -0.191 1.191 15 H -0.198 1.198 16 H -0.208 1.208 17 C 0.201 3.799 18 C -0.332 4.332 19 C 0.122 3.878 20 C -0.311 4.311 21 C -0.113 4.113 22 C -0.179 4.179 23 C -0.321 4.321 24 S 0.400 5.600 25 N -0.290 5.290 26 C 0.047 3.953 27 N -0.321 5.321 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.025 0.975 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.191 0.809 41 H 0.221 0.779 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.496 -1.550 -17.833 23.034 hybrid contribution 1.237 0.173 0.166 1.260 sum -13.259 -1.376 -17.668 22.132 Atomic orbital electron populations 1.21811 0.89511 1.04459 1.04068 1.23316 0.97607 0.79298 1.02079 1.86498 1.22956 1.33720 1.83668 1.24928 0.81112 0.93718 0.71672 1.90680 1.61451 1.44107 1.46080 1.21207 0.79319 0.90158 1.08952 1.46582 1.04045 1.73120 1.04224 1.18792 0.91010 0.96283 0.78116 1.21651 1.36610 0.92599 1.06479 0.92411 1.25785 0.95137 1.01355 0.96350 1.70079 1.39511 1.32308 1.14792 0.85377 0.77817 0.79344 0.78283 1.19051 1.19843 1.20849 1.18587 0.88697 0.86226 0.86388 1.22037 1.02182 1.17319 0.91687 1.19133 0.89225 0.88734 0.90701 1.22592 0.98055 1.16084 0.94372 1.20718 1.02398 0.97794 0.90425 1.20385 0.92372 1.04117 1.01019 1.26387 1.01569 1.06597 0.97590 1.84135 1.02196 1.70226 1.03423 1.68470 1.09647 1.21517 1.29363 1.25145 1.01356 0.87778 0.81052 1.68059 1.08105 1.22639 1.33262 0.90573 0.88183 0.91147 0.91608 0.92286 0.83987 0.83798 0.97493 0.96619 0.92477 0.83217 0.83428 0.80863 0.77949 0.76430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 10.29 71.98 0.74 -1.31 16 2 C 0.05 1.17 6.19 71.98 0.45 1.62 16 3 O -0.35 -9.84 10.22 -51.36 -0.52 -10.37 16 4 C 0.44 15.45 8.03 71.24 0.57 16.02 16 5 O -0.53 -23.14 16.18 21.95 0.36 -22.78 16 6 C 0.13 4.34 5.86 85.63 0.50 4.84 16 7 N -0.57 -25.27 2.05 -712.21 -1.46 -26.73 16 8 C 0.28 15.05 5.23 85.63 0.45 15.50 16 9 C -0.53 -29.78 9.39 25.60 0.24 -29.54 16 10 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 11 C 0.01 0.73 5.46 84.66 0.46 1.19 16 12 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 13 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 C 0.44 19.26 7.39 133.00 0.98 20.24 16 18 C -0.30 -10.94 8.87 22.85 0.20 -10.74 16 19 C 0.26 9.10 6.77 41.66 0.28 9.38 16 20 C -0.19 -5.27 6.38 23.98 0.15 -5.11 16 21 C -0.08 -1.81 9.86 21.40 0.21 -1.60 16 22 C -0.15 -2.37 10.16 21.14 0.21 -2.16 16 23 C -0.18 -2.62 11.23 66.80 0.75 -1.87 16 24 S 0.14 2.73 22.34 -56.49 -1.26 1.47 16 25 N -0.57 -20.36 10.10 -189.59 -1.91 -22.27 16 26 C 0.34 12.73 12.27 180.94 2.22 14.95 16 27 N -0.60 -27.31 9.22 -197.85 -1.82 -29.13 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.14 4.43 8.07 -2.39 -0.02 4.41 16 34 H 0.14 3.75 6.05 -2.39 -0.01 3.74 16 35 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 36 H 0.02 0.97 7.33 -2.39 -0.02 0.95 16 37 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.15 4.54 5.48 -2.91 -0.02 4.53 16 39 H 0.15 3.38 8.00 -2.91 -0.02 3.35 16 40 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 41 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.22 6.58 8.06 -2.91 -0.02 6.56 16 Total: -1.00 -76.82 381.61 5.16 -71.66 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.05 Total: 15.87 kcal Atomic # 6 Polarization: 22.97 SS G_CDS: 8.43 Total: 31.40 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -4.91 Total: -133.29 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.17 Total: -33.15 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.26 Total: 1.47 kcal Total: -76.82 5.16 -71.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.581 kcal (2) G-P(sol) polarization free energy of solvation -76.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds