Wall clock time and date at job start Wed Apr 1 2020 04:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45205 * 109.47214 * 2 1 4 4 C 1.34221 * 117.00440 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99846 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00493 * 179.97438 * 4 3 2 7 7 N 1.46497 * 109.47254 * 179.97438 * 6 4 3 8 8 C 1.46505 * 119.99751 * 89.99890 * 7 6 4 9 9 C 1.50700 * 109.47400 * 264.36845 * 8 7 6 10 10 H 1.08004 * 119.99831 * 324.90113 * 9 8 7 11 11 C 1.37875 * 119.99902 * 144.89014 * 9 8 7 12 12 N 1.31505 * 120.00349 * 5.71562 * 11 9 8 13 13 Si 1.86800 * 119.99604 * 185.71220 * 11 9 8 14 14 H 1.48501 * 109.47113 * 90.00798 * 13 11 9 15 15 H 1.48503 * 109.46797 * 210.00019 * 13 11 9 16 16 H 1.48497 * 109.47339 * 330.00143 * 13 11 9 17 17 C 1.39087 * 120.00256 * 269.99759 * 7 6 4 18 18 C 1.39647 * 120.02034 * 174.59859 * 17 7 6 19 19 C 1.38231 * 118.02268 * 179.73760 * 18 17 7 20 20 C 1.40168 * 117.94318 * 0.52330 * 19 18 17 21 21 C 1.47720 * 120.12130 * 179.74944 * 20 19 18 22 22 C 1.34854 * 125.27383 * 179.69629 * 21 20 19 23 23 C 1.37912 * 114.70323 * 179.83237 * 22 21 20 24 24 C 1.33649 * 115.07028 * 0.46123 * 23 22 21 25 25 S 1.75849 * 109.76069 * 359.75241 * 24 23 22 26 26 N 1.32778 * 119.75515 * 359.72742 * 20 19 18 27 27 N 1.28349 * 122.09165 * 359.97438 * 26 20 19 28 28 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47173 * 300.00250 * 1 2 3 30 30 H 1.08996 * 109.46963 * 60.00616 * 1 2 3 31 31 H 1.08994 * 109.47799 * 239.99552 * 2 1 3 32 32 H 1.09009 * 109.47297 * 119.99272 * 2 1 3 33 33 H 1.09002 * 109.46979 * 59.99685 * 6 4 3 34 34 H 1.08999 * 109.46672 * 299.99523 * 6 4 3 35 35 H 1.09005 * 109.46760 * 144.37137 * 8 7 6 36 36 H 1.08996 * 109.47263 * 24.37473 * 8 7 6 37 37 H 0.96993 * 120.00478 * 179.97438 * 12 11 9 38 38 H 1.07998 * 120.99082 * 359.97438 * 18 17 7 39 39 H 1.07999 * 121.02686 * 180.24901 * 19 18 17 40 40 H 1.08002 * 122.64346 * 0.02562 * 22 21 20 41 41 H 1.07999 * 122.46307 * 180.19122 * 23 22 21 42 42 H 1.08006 * 125.11522 * 179.73141 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3836 2.8608 -0.0010 8 6 6.1152 2.8219 -1.2698 9 6 6.4126 1.3903 -1.6345 10 1 6.6329 0.6703 -0.8601 11 6 6.4032 0.9995 -2.9567 12 7 6.2464 1.8957 -3.9062 13 14 6.6134 -0.8031 -3.3992 14 1 5.2817 -1.4578 -3.4545 15 1 7.2746 -0.9136 -4.7243 16 1 7.4511 -1.4709 -2.3708 17 6 6.0781 2.8250 1.2035 18 6 7.4621 2.6385 1.2068 19 6 8.1113 2.6152 2.4269 20 6 7.3378 2.7692 3.5856 21 6 7.9814 2.7463 4.9150 22 6 7.3407 2.8897 6.0930 23 6 8.1561 2.8293 7.2036 24 6 9.4545 2.6480 6.9438 25 16 9.7031 2.5353 5.2066 26 7 6.0245 2.9362 3.4838 27 7 5.4265 2.9630 2.3485 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.5850 3.4699 0.8888 34 1 3.5844 3.4693 -0.8912 35 1 7.0503 3.3724 -1.1670 36 1 5.5093 3.2779 -2.0527 37 1 6.2402 1.6208 -4.8363 38 1 8.0094 2.5199 0.2833 39 1 9.1810 2.4781 2.4857 40 1 6.2730 3.0369 6.1613 41 1 7.7740 2.9259 8.2092 42 1 10.2337 2.5812 7.6887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157162016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:42 Heat of formation + Delta-G solvation = 18.100238 kcal Electronic energy + Delta-G solvation = -27540.080778 eV Core-core repulsion = 23613.105565 eV Total energy + Delta-G solvation = -3926.975213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53060 -39.75426 -37.73553 -36.78665 -35.57772 -33.17820 -32.72241 -31.85090 -31.38141 -28.75840 -28.65661 -26.19779 -24.86358 -23.71809 -23.17636 -22.78673 -21.48456 -20.35246 -19.22578 -17.86980 -17.35237 -17.08833 -16.84432 -16.32866 -16.01224 -15.69196 -15.49019 -14.86416 -14.57687 -14.42537 -14.14758 -13.50736 -13.43656 -13.21026 -12.98361 -12.84773 -12.66549 -12.50371 -12.40910 -12.14562 -11.99797 -11.54335 -11.39881 -11.33011 -11.20685 -10.95932 -10.84528 -10.80888 -10.62162 -10.15165 -10.07408 -9.96588 -9.73387 -9.52810 -9.11723 -8.64715 -8.58551 -8.51436 -7.11234 -6.22917 -4.28267 0.58315 1.34067 1.52452 1.84291 1.94854 2.82393 2.92173 3.03996 3.22636 3.29124 3.35179 3.58052 4.20159 4.32775 4.47364 4.85100 5.00491 5.06209 5.08746 5.10278 5.10512 5.20175 5.26308 5.44417 5.46158 5.49194 5.54871 5.61503 5.76794 5.85556 5.90176 6.02045 6.05865 6.07733 6.29499 6.34971 6.47817 6.52617 6.77645 6.93710 7.02727 7.59998 7.76171 7.90119 7.97932 8.45263 8.82475 9.28142 9.39027 10.81130 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.003330 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.648376 B = 8405.583452 C =10155.020334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.437 3.563 5 O -0.470 6.470 6 C 0.140 3.860 7 N -0.555 5.555 8 C 0.231 3.769 9 C -0.516 4.516 10 H 0.065 0.935 11 C 0.068 3.932 12 N -0.893 5.893 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.272 1.272 17 C 0.361 3.639 18 C -0.150 4.150 19 C -0.082 4.082 20 C 0.053 3.947 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.223 4.223 25 S 0.115 5.885 26 N -0.188 5.188 27 N -0.321 5.321 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.266 0.734 38 H 0.162 0.838 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.628 2.605 13.870 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.276 3.724 5 O -0.353 6.353 6 C 0.014 3.986 7 N -0.265 5.265 8 C 0.114 3.886 9 C -0.555 4.555 10 H 0.083 0.917 11 C -0.135 4.135 12 N -0.531 5.531 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.197 1.197 17 C 0.120 3.880 18 C -0.182 4.182 19 C -0.110 4.110 20 C -0.098 4.098 21 C -0.228 4.228 22 C -0.151 4.151 23 C -0.161 4.161 24 C -0.359 4.359 25 S 0.378 5.622 26 N -0.032 5.032 27 N -0.175 5.175 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.179 0.821 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.158 0.842 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.698 2.323 13.204 13.425 hybrid contribution 0.252 -1.454 -0.265 1.499 sum -0.447 0.870 12.940 12.977 Atomic orbital electron populations 1.21775 0.93161 1.02453 1.03238 1.22866 0.94778 0.81229 1.02288 1.86469 1.25523 1.31571 1.85114 1.24578 0.80169 0.94172 0.73523 1.90721 1.59817 1.42417 1.42314 1.20785 0.81682 0.90451 1.05706 1.47542 1.03342 1.71728 1.03849 1.19828 0.92428 0.97979 0.78406 1.21442 1.46886 0.94805 0.92329 0.91696 1.24933 0.94427 0.97805 0.96330 1.69890 1.49477 1.33425 1.00307 0.86490 0.78429 0.85033 0.77496 1.20633 1.21261 1.19710 1.20183 0.90043 0.89280 0.88538 1.21991 0.93935 1.02374 0.99933 1.22017 1.00714 0.96615 0.91654 1.19895 0.92173 1.06830 0.90882 1.22389 0.95815 1.09702 0.94898 1.20391 1.01929 1.02579 0.90212 1.20095 0.92602 1.03308 1.00060 1.25689 1.00581 1.11310 0.98328 1.84097 1.04917 1.71652 1.01535 1.72842 1.07290 1.06340 1.16681 1.72844 1.30018 1.21232 0.93359 0.90758 0.91674 0.91613 0.91542 0.91801 0.86628 0.86749 0.95074 0.91301 0.92463 0.82062 0.84367 0.83394 0.84222 0.81895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.25 16 2 C 0.06 0.95 6.19 37.16 0.23 1.18 16 3 O -0.37 -6.45 10.22 -39.24 -0.40 -6.85 16 4 C 0.44 8.80 8.03 36.01 0.29 9.09 16 5 O -0.47 -11.26 14.89 -18.75 -0.28 -11.54 16 6 C 0.14 2.54 6.11 -5.19 -0.03 2.51 16 7 N -0.56 -11.38 2.11 -176.37 -0.37 -11.76 16 8 C 0.23 5.27 5.25 -5.19 -0.03 5.24 16 9 C -0.52 -13.36 7.60 -34.44 -0.26 -13.62 16 10 H 0.06 1.80 7.79 -52.48 -0.41 1.39 16 11 C 0.07 1.81 5.45 -17.82 -0.10 1.72 16 12 N -0.89 -24.19 12.85 55.43 0.71 -23.48 16 13 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.36 7.31 7.42 -154.69 -1.15 6.16 16 18 C -0.15 -2.79 9.11 -39.06 -0.36 -3.15 16 19 C -0.08 -1.34 9.72 -38.86 -0.38 -1.72 16 20 C 0.05 0.91 6.83 -82.86 -0.57 0.34 16 21 C -0.11 -1.58 6.38 -36.91 -0.24 -1.82 16 22 C -0.12 -1.57 9.85 -40.90 -0.40 -1.97 16 23 C -0.13 -1.38 10.16 -41.31 -0.42 -1.80 16 24 C -0.22 -2.21 11.22 29.12 0.33 -1.88 16 25 S 0.12 1.33 22.30 -107.50 -2.40 -1.07 16 26 N -0.19 -3.59 11.12 33.31 0.37 -3.22 16 27 N -0.32 -6.46 10.24 31.27 0.32 -6.14 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 32 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.12 1.88 7.31 -51.93 -0.38 1.50 16 34 H 0.11 1.83 7.86 -51.93 -0.41 1.42 16 35 H 0.03 0.69 6.78 -51.93 -0.35 0.34 16 36 H 0.07 1.65 7.08 -51.93 -0.37 1.29 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.16 3.01 6.24 -52.49 -0.33 2.68 16 39 H 0.14 1.86 7.36 -52.49 -0.39 1.48 16 40 H 0.15 1.94 7.99 -52.49 -0.42 1.52 16 41 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.16 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -30.96 377.73 -9.21 -40.17 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.14 Total: 2.71 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.69 Total: -0.98 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 1.03 Total: -44.60 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.68 Total: -18.39 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.40 Total: -1.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.96 -9.21 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.274 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds