Wall clock time and date at job start Wed Apr 1 2020 04:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81395 * 109.47076 * 2 1 4 4 O 1.42110 * 110.54303 * 68.37459 * 3 2 1 5 5 O 1.42097 * 110.54671 * 291.62837 * 3 2 1 6 6 C 1.76193 * 104.45123 * 179.97438 * 3 2 1 7 7 C 1.38233 * 120.00099 * 90.00061 * 6 3 2 8 8 C 1.38238 * 120.00383 * 179.97438 * 7 6 3 9 9 C 1.38234 * 119.99725 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00161 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.47121 * 90.00091 * 10 9 8 12 12 C 1.38833 * 120.00244 * 180.02562 * 11 10 9 13 13 C 1.39954 * 119.96695 * 359.97438 * 12 11 10 14 14 N 1.32135 * 120.31843 * 179.97438 * 13 12 11 15 15 C 1.31932 * 120.26736 * 0.02950 * 14 13 12 16 16 C 1.40678 * 119.93720 * 359.97438 * 15 14 13 17 17 C 1.41266 * 120.15974 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00035 * 6.13012 * 17 16 15 19 19 C 1.40054 * 120.00528 * 185.86063 * 17 16 15 20 20 N 1.30730 * 119.99675 * 353.97179 * 19 17 16 21 21 Si 1.86800 * 120.00450 * 173.97005 * 19 17 16 22 22 H 1.48501 * 109.46840 * 89.99733 * 21 19 17 23 23 H 1.48497 * 109.47080 * 209.99831 * 21 19 17 24 24 H 1.48498 * 109.46912 * 330.00039 * 21 19 17 25 25 N 1.32234 * 119.96716 * 180.30650 * 12 11 10 26 26 C 1.38239 * 120.00224 * 0.25454 * 9 8 7 27 27 C 1.38237 * 120.00263 * 269.98286 * 6 3 2 28 28 H 1.08993 * 109.47416 * 300.00009 * 1 2 3 29 29 H 1.09005 * 109.46785 * 60.00226 * 1 2 3 30 30 H 1.09006 * 109.46831 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46793 * 239.99993 * 2 1 3 32 32 H 1.08997 * 109.46910 * 120.00032 * 2 1 3 33 33 H 1.07999 * 119.99884 * 359.97438 * 7 6 3 34 34 H 1.08000 * 120.00079 * 179.97438 * 8 7 6 35 35 H 1.09009 * 109.46890 * 330.00248 * 10 9 8 36 36 H 1.08998 * 109.47723 * 210.00481 * 10 9 8 37 37 H 0.97005 * 120.00217 * 0.02562 * 11 10 9 38 38 H 1.07998 * 119.84426 * 0.02758 * 13 12 11 39 39 H 1.07997 * 120.02951 * 180.02562 * 15 14 13 40 40 H 0.97005 * 120.00089 * 180.02562 * 20 19 17 41 41 H 1.07993 * 120.00273 * 179.72430 * 26 9 8 42 42 H 1.08004 * 119.99753 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3438 1.2371 5 8 1.8385 2.3439 -1.2369 6 6 3.8898 1.5561 0.0008 7 6 4.5789 1.4954 -1.1961 8 6 5.9560 1.3750 -1.1955 9 6 6.6440 1.3147 0.0019 10 6 8.1452 1.1828 0.0026 11 7 8.7525 2.5160 0.0027 12 6 10.1344 2.6493 0.0028 13 6 10.9467 1.5096 0.0033 14 7 12.2627 1.6285 0.0028 15 6 12.8225 2.8231 0.0025 16 6 12.0165 3.9761 0.0021 17 6 12.6109 5.2576 0.0023 18 1 13.6819 5.3562 -0.0972 19 6 11.8111 6.4007 0.1257 20 7 10.5085 6.2904 0.1221 21 14 12.6055 8.0828 0.2954 22 1 12.8077 8.6729 -1.0522 23 1 11.7229 8.9685 1.0964 24 1 13.9176 7.9440 0.9769 25 7 10.6818 3.8530 0.0090 26 6 5.9545 1.3695 1.1988 27 6 4.5779 1.4961 1.1982 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0413 1.5421 -2.1316 34 1 6.4943 1.3272 -2.1306 35 1 8.4626 0.6390 -0.8873 36 1 8.4619 0.6393 0.8927 37 1 8.1891 3.3056 0.0027 38 1 10.4958 0.5283 0.0032 39 1 13.8985 2.9158 0.0017 40 1 9.9544 7.0821 0.2072 41 1 6.4916 1.3179 2.1343 42 1 4.0397 1.5442 2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159286071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:18 Heat of formation + Delta-G solvation = 2.321108 kcal Electronic energy + Delta-G solvation = -26506.771608 eV Core-core repulsion = 22579.112161 eV Total energy + Delta-G solvation = -3927.659447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.72986 -38.84588 -37.38565 -36.23552 -35.59310 -33.93108 -33.64823 -32.37316 -31.29267 -31.21919 -29.02202 -26.00893 -25.85474 -24.46305 -23.11225 -22.52978 -21.92152 -20.93041 -19.28238 -18.21011 -17.54551 -16.91865 -16.60857 -16.52562 -15.54703 -15.49147 -15.40276 -14.94512 -14.83937 -14.65012 -14.47158 -13.91921 -13.87325 -13.66157 -13.55557 -13.16244 -13.00984 -12.91403 -12.51512 -12.35362 -12.26656 -12.06609 -12.05847 -11.51267 -11.44829 -11.35480 -11.31339 -11.14294 -10.74739 -10.72279 -10.41797 -9.93763 -9.67607 -9.47896 -9.41991 -9.26004 -8.39955 -7.42596 -6.79746 -6.47873 -4.69011 -0.29829 0.52273 1.08440 2.55673 2.67449 3.03525 3.05456 3.09864 3.10109 3.24540 3.59298 3.75408 3.85744 4.12271 4.16259 4.27482 4.54447 4.55526 4.66423 4.68748 4.69101 5.01427 5.10177 5.16664 5.17251 5.41262 5.43186 5.47537 5.70205 5.75523 5.83044 5.88488 5.90231 6.04568 6.26963 6.32448 6.47524 6.59213 6.73414 7.00546 7.08908 7.54727 7.88783 7.99814 8.36495 8.52378 8.80403 9.37587 9.96239 10.15912 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.002180 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.101945 B =12840.247480 C =14055.173818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.609 4.609 3 S 2.497 3.503 4 O -0.936 6.936 5 O -0.936 6.936 6 C -0.661 4.661 7 C -0.027 4.027 8 C -0.120 4.120 9 C -0.038 4.038 10 C 0.171 3.829 11 N -0.729 5.729 12 C 0.373 3.627 13 C -0.172 4.172 14 N -0.407 5.407 15 C -0.106 4.106 16 C 0.245 3.755 17 C -0.414 4.414 18 H 0.091 0.909 19 C 0.067 3.933 20 N -0.708 5.708 21 Si 0.911 3.089 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.259 1.259 25 N -0.507 5.507 26 C -0.120 4.120 27 C -0.027 4.027 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.398 0.602 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.275 0.725 41 H 0.136 0.864 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.152 -11.293 -0.012 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.738 4.738 3 S 2.677 3.323 4 O -0.934 6.934 5 O -0.934 6.934 6 C -0.748 4.748 7 C -0.046 4.046 8 C -0.139 4.139 9 C -0.039 4.039 10 C 0.046 3.954 11 N -0.367 5.367 12 C 0.130 3.870 13 C -0.333 4.333 14 N -0.118 5.118 15 C -0.276 4.276 16 C 0.117 3.883 17 C -0.447 4.447 18 H 0.109 0.891 19 C -0.160 4.160 20 N -0.329 5.329 21 Si 0.735 3.265 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.183 1.183 25 N -0.234 5.234 26 C -0.139 4.139 27 C -0.046 4.046 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.233 0.767 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.154 0.846 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.829 -10.656 0.009 22.511 hybrid contribution 0.738 0.359 0.078 0.825 sum -19.091 -10.297 0.087 21.691 Atomic orbital electron populations 1.21568 0.90291 1.05255 1.03769 1.30207 1.07076 1.24386 1.12169 1.05447 0.74453 0.77603 0.74792 1.93579 1.83426 1.71871 1.44477 1.93577 1.83417 1.71865 1.44492 1.30468 1.25463 1.19235 0.99639 1.20930 0.94794 0.92349 0.96540 1.21296 0.94062 1.00171 0.98397 1.20392 0.96042 0.94019 0.93448 1.20122 0.86435 0.86633 1.02257 1.44016 1.03180 1.05682 1.83799 1.19466 0.84554 0.92259 0.90764 1.21890 0.90054 0.96053 1.25301 1.67505 1.11331 1.27323 1.05684 1.22908 0.99210 0.88721 1.16794 1.19093 0.87211 0.93764 0.88261 1.19635 0.95040 0.89107 1.40893 0.89107 1.26146 0.94739 1.01496 0.93604 1.70101 1.04754 1.30721 1.27309 0.86263 0.80274 0.80711 0.79282 1.19277 1.20046 1.18288 1.69021 1.11684 1.18984 1.23688 1.21297 0.94062 1.00175 0.98398 1.20930 0.94803 0.92333 0.96536 0.90726 0.90731 0.89735 0.84601 0.84601 0.84066 0.84590 0.91363 0.91371 0.76668 0.86325 0.85217 0.91402 0.84598 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.92 37.16 0.37 -0.30 16 2 C -0.61 -2.82 6.70 37.16 0.25 -2.57 16 3 S 2.50 22.20 5.16 -107.50 -0.55 21.64 16 4 O -0.94 -11.16 17.12 -57.54 -0.99 -12.14 16 5 O -0.94 -11.15 17.13 -57.54 -0.99 -12.14 16 6 C -0.66 -6.67 5.66 -39.58 -0.22 -6.89 16 7 C -0.03 -0.28 9.47 -39.58 -0.37 -0.66 16 8 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 9 C -0.04 -0.47 5.25 -104.62 -0.55 -1.02 16 10 C 0.17 2.41 5.02 -5.20 -0.03 2.39 16 11 N -0.73 -13.84 5.71 -61.46 -0.35 -14.19 16 12 C 0.37 8.88 7.66 -155.02 -1.19 7.69 16 13 C -0.17 -4.02 10.50 -16.78 -0.18 -4.20 16 14 N -0.41 -10.26 10.47 -12.11 -0.13 -10.39 16 15 C -0.11 -2.72 10.97 -16.59 -0.18 -2.90 16 16 C 0.24 6.67 6.54 -84.83 -0.55 6.11 16 17 C -0.41 -10.77 9.15 -37.75 -0.35 -11.11 16 18 H 0.09 2.17 7.86 -52.48 -0.41 1.76 16 19 C 0.07 1.65 5.49 -17.34 -0.10 1.56 16 20 N -0.71 -18.32 11.51 55.55 0.64 -17.68 16 21 Si 0.91 18.07 29.56 -169.99 -5.03 13.04 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 25 N -0.51 -13.74 8.09 -10.14 -0.08 -13.83 16 26 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 27 C -0.03 -0.28 9.47 -39.58 -0.37 -0.66 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.14 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.14 1.19 7.57 -52.49 -0.40 0.79 16 34 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.07 0.92 7.88 -51.92 -0.41 0.51 16 36 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 37 H 0.40 7.75 8.59 -40.82 -0.35 7.40 16 38 H 0.12 2.42 6.70 -52.49 -0.35 2.06 16 39 H 0.13 3.03 8.06 -52.49 -0.42 2.61 16 40 H 0.27 6.46 8.29 -40.82 -0.34 6.13 16 41 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.14 1.19 7.57 -52.48 -0.40 0.80 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -35.20 374.50 -11.31 -46.51 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.24 Total: 9.56 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -4.24 Total: -16.03 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.08 Total: -56.09 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -1.97 Total: -24.28 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 22.20 SS G_CDS: -0.55 Total: 21.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.20 -11.31 -46.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159286071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.829 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds