Wall clock time and date at job start Wed Apr 1 2020 04:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81395 * 109.47076 * 2 1 4 4 O 1.42110 * 110.54303 * 68.37459 * 3 2 1 5 5 O 1.42097 * 110.54671 * 291.62837 * 3 2 1 6 6 C 1.76193 * 104.45123 * 179.97438 * 3 2 1 7 7 C 1.38233 * 120.00099 * 90.00061 * 6 3 2 8 8 C 1.38238 * 120.00383 * 179.97438 * 7 6 3 9 9 C 1.38234 * 119.99725 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00161 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.47121 * 90.00091 * 10 9 8 12 12 C 1.38833 * 120.00244 * 180.02562 * 11 10 9 13 13 C 1.39954 * 119.96695 * 359.97438 * 12 11 10 14 14 N 1.32135 * 120.31843 * 179.97438 * 13 12 11 15 15 C 1.31932 * 120.26736 * 0.02950 * 14 13 12 16 16 C 1.40678 * 119.93720 * 359.97438 * 15 14 13 17 17 C 1.41266 * 120.15974 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00035 * 6.13012 * 17 16 15 19 19 C 1.40054 * 120.00528 * 185.86063 * 17 16 15 20 20 N 1.30730 * 119.99675 * 353.97179 * 19 17 16 21 21 Si 1.86800 * 120.00450 * 173.97005 * 19 17 16 22 22 H 1.48501 * 109.46840 * 89.99733 * 21 19 17 23 23 H 1.48497 * 109.47080 * 209.99831 * 21 19 17 24 24 H 1.48498 * 109.46912 * 330.00039 * 21 19 17 25 25 N 1.32234 * 119.96716 * 180.30650 * 12 11 10 26 26 C 1.38239 * 120.00224 * 0.25454 * 9 8 7 27 27 C 1.38237 * 120.00263 * 269.98286 * 6 3 2 28 28 H 1.08993 * 109.47416 * 300.00009 * 1 2 3 29 29 H 1.09005 * 109.46785 * 60.00226 * 1 2 3 30 30 H 1.09006 * 109.46831 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46793 * 239.99993 * 2 1 3 32 32 H 1.08997 * 109.46910 * 120.00032 * 2 1 3 33 33 H 1.07999 * 119.99884 * 359.97438 * 7 6 3 34 34 H 1.08000 * 120.00079 * 179.97438 * 8 7 6 35 35 H 1.09009 * 109.46890 * 330.00248 * 10 9 8 36 36 H 1.08998 * 109.47723 * 210.00481 * 10 9 8 37 37 H 0.97005 * 120.00217 * 0.02562 * 11 10 9 38 38 H 1.07998 * 119.84426 * 0.02758 * 13 12 11 39 39 H 1.07997 * 120.02951 * 180.02562 * 15 14 13 40 40 H 0.97005 * 120.00089 * 180.02562 * 20 19 17 41 41 H 1.07993 * 120.00273 * 179.72430 * 26 9 8 42 42 H 1.08004 * 119.99753 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3438 1.2371 5 8 1.8385 2.3439 -1.2369 6 6 3.8898 1.5561 0.0008 7 6 4.5789 1.4954 -1.1961 8 6 5.9560 1.3750 -1.1955 9 6 6.6440 1.3147 0.0019 10 6 8.1452 1.1828 0.0026 11 7 8.7525 2.5160 0.0027 12 6 10.1344 2.6493 0.0028 13 6 10.9467 1.5096 0.0033 14 7 12.2627 1.6285 0.0028 15 6 12.8225 2.8231 0.0025 16 6 12.0165 3.9761 0.0021 17 6 12.6109 5.2576 0.0023 18 1 13.6819 5.3562 -0.0972 19 6 11.8111 6.4007 0.1257 20 7 10.5085 6.2904 0.1221 21 14 12.6055 8.0828 0.2954 22 1 12.8077 8.6729 -1.0522 23 1 11.7229 8.9685 1.0964 24 1 13.9176 7.9440 0.9769 25 7 10.6818 3.8530 0.0090 26 6 5.9545 1.3695 1.1988 27 6 4.5779 1.4961 1.1982 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0413 1.5421 -2.1316 34 1 6.4943 1.3272 -2.1306 35 1 8.4626 0.6390 -0.8873 36 1 8.4619 0.6393 0.8927 37 1 8.1891 3.3056 0.0027 38 1 10.4958 0.5283 0.0032 39 1 13.8985 2.9158 0.0017 40 1 9.9544 7.0821 0.2072 41 1 6.4916 1.3179 2.1343 42 1 4.0397 1.5442 2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159286071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:18 Heat of formation + Delta-G solvation = -22.280787 kcal Electronic energy + Delta-G solvation = -26507.838427 eV Core-core repulsion = 22579.112161 eV Total energy + Delta-G solvation = -3928.726265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93797 -40.38181 -38.18374 -37.11817 -36.96168 -35.79457 -34.02640 -33.89192 -32.78869 -32.11862 -30.67417 -27.77506 -27.16977 -24.92146 -24.32800 -23.94205 -23.24923 -22.43646 -20.01095 -19.43439 -18.96227 -18.46893 -17.33817 -17.27111 -17.18426 -16.85867 -16.69826 -16.32526 -16.13637 -15.59644 -15.29714 -15.14438 -15.11209 -14.74572 -14.58402 -14.21532 -13.95652 -13.86505 -13.37702 -13.36206 -13.25774 -13.19307 -13.08237 -12.98233 -12.87995 -12.56161 -12.37348 -12.28174 -12.04935 -11.88292 -11.75158 -11.40906 -11.38163 -11.35664 -10.36139 -10.25709 -10.09142 -9.33726 -8.53012 -8.34497 -6.64957 -0.94815 -0.34549 0.24598 0.82843 1.24472 1.41168 1.53067 1.58072 1.85704 2.16704 2.19784 2.74293 2.82263 2.96959 3.12589 3.51084 3.67115 3.73645 3.88321 3.89267 3.93160 4.19678 4.25086 4.27643 4.41528 4.41835 4.46545 4.56243 4.62790 4.72273 4.75780 4.86907 4.92638 4.92889 5.00969 5.04752 5.13954 5.15395 5.19978 5.41702 5.69899 5.76056 6.07831 6.18968 6.61385 6.65042 6.94490 7.45462 8.06472 8.33095 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.002180 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.101945 B =12840.247480 C =14055.173818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.577 4.577 3 S 2.496 3.504 4 O -0.974 6.974 5 O -0.974 6.974 6 C -0.659 4.659 7 C -0.034 4.034 8 C -0.126 4.126 9 C -0.052 4.052 10 C 0.170 3.830 11 N -0.720 5.720 12 C 0.366 3.634 13 C -0.173 4.173 14 N -0.416 5.416 15 C -0.133 4.133 16 C 0.215 3.785 17 C -0.441 4.441 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.744 5.744 21 Si 0.992 3.008 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.251 1.251 25 N -0.541 5.541 26 C -0.126 4.126 27 C -0.034 4.034 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.394 0.606 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.281 0.719 41 H 0.143 0.857 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.476 -12.336 0.077 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.711 4.711 3 S 2.679 3.321 4 O -0.971 6.971 5 O -0.971 6.971 6 C -0.745 4.745 7 C -0.053 4.053 8 C -0.145 4.145 9 C -0.053 4.053 10 C 0.047 3.953 11 N -0.356 5.356 12 C 0.121 3.879 13 C -0.335 4.335 14 N -0.127 5.127 15 C -0.301 4.301 16 C 0.087 3.913 17 C -0.473 4.473 18 H 0.120 0.880 19 C -0.201 4.201 20 N -0.365 5.365 21 Si 0.812 3.188 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.175 1.175 25 N -0.269 5.269 26 C -0.145 4.145 27 C -0.053 4.053 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.176 0.824 34 H 0.161 0.839 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.229 0.771 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.092 0.908 41 H 0.161 0.839 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.136 -11.693 0.095 24.155 hybrid contribution 0.934 0.508 0.041 1.064 sum -20.202 -11.185 0.136 23.092 Atomic orbital electron populations 1.21785 0.89826 1.06830 1.03963 1.29991 1.07193 1.19019 1.14896 1.05457 0.73640 0.79709 0.73247 1.93529 1.83527 1.74569 1.45494 1.93527 1.83517 1.74563 1.45505 1.30700 1.26344 1.17998 0.99486 1.21177 0.94576 0.92065 0.97472 1.21452 0.94637 0.99992 0.98435 1.20220 0.94742 0.96017 0.94271 1.20313 0.87729 0.84221 1.03075 1.44210 1.01400 1.07634 1.82326 1.19807 0.86491 0.91705 0.89919 1.22379 0.89669 0.97343 1.24128 1.67521 1.12247 1.27135 1.05803 1.23052 0.99832 0.88723 1.18522 1.19528 0.87886 0.94883 0.88974 1.20053 0.95941 0.89675 1.41631 0.88021 1.27107 0.95096 1.05348 0.92528 1.70194 1.06304 1.32241 1.27755 0.85052 0.79316 0.75002 0.79469 1.18527 1.19489 1.17463 1.69022 1.11961 1.20684 1.25205 1.21451 0.94632 1.00004 0.98433 1.21176 0.94588 0.92065 0.97467 0.90726 0.90727 0.87267 0.81965 0.81972 0.82420 0.83870 0.90392 0.90426 0.77136 0.83198 0.84036 0.90807 0.83892 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 9.92 71.98 0.71 -0.25 16 2 C -0.58 -3.36 6.70 71.98 0.48 -2.88 16 3 S 2.50 41.33 5.16 -56.49 -0.29 41.04 16 4 O -0.97 -22.74 17.12 -127.65 -2.19 -24.93 16 5 O -0.97 -22.73 17.13 -127.65 -2.19 -24.91 16 6 C -0.66 -12.44 5.66 22.27 0.13 -12.32 16 7 C -0.03 -0.66 9.47 22.27 0.21 -0.45 16 8 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 9 C -0.05 -1.21 5.25 -19.87 -0.10 -1.32 16 10 C 0.17 4.64 5.02 85.63 0.43 5.07 16 11 N -0.72 -27.32 5.71 -348.36 -1.99 -29.31 16 12 C 0.37 17.58 7.66 133.37 1.02 18.60 16 13 C -0.17 -8.04 10.50 85.06 0.89 -7.14 16 14 N -0.42 -21.06 10.47 -192.24 -2.01 -23.07 16 15 C -0.13 -6.97 10.97 85.27 0.94 -6.03 16 16 C 0.21 12.05 6.54 40.15 0.26 12.31 16 17 C -0.44 -23.39 9.15 23.46 0.21 -23.17 16 18 H 0.10 4.93 7.86 -2.91 -0.02 4.91 16 19 C 0.02 1.12 5.49 85.30 0.47 1.59 16 20 N -0.74 -39.19 11.51 21.84 0.25 -38.94 16 21 Si 0.99 36.95 29.56 68.60 2.03 38.98 16 22 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 23 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 25 N -0.54 -30.04 8.09 -186.00 -1.51 -31.55 16 26 C -0.13 -2.70 9.70 22.27 0.22 -2.49 16 27 C -0.03 -0.67 9.47 22.27 0.21 -0.46 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.45 8.14 -2.38 -0.02 0.44 16 30 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.16 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.16 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.16 2.44 7.57 -2.91 -0.02 2.42 16 34 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.08 1.99 7.88 -2.38 -0.02 1.97 16 36 H 0.08 1.99 7.88 -2.39 -0.02 1.97 16 37 H 0.39 15.57 8.59 -92.70 -0.80 14.77 16 38 H 0.15 5.86 6.70 -2.91 -0.02 5.84 16 39 H 0.14 6.80 8.06 -2.91 -0.02 6.77 16 40 H 0.28 13.41 8.29 -92.70 -0.77 12.64 16 41 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.16 2.45 7.57 -2.91 -0.02 2.43 16 Total: -1.00 -78.04 374.50 -1.33 -79.37 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 0.26 Total: 34.73 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 6.30 Total: -21.41 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -5.26 Total: -122.86 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -4.37 Total: -49.84 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 16 Polarization: 41.33 SS G_CDS: -0.29 Total: 41.04 kcal Total: -78.04 -1.33 -79.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159286071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.087 kcal (2) G-P(sol) polarization free energy of solvation -78.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds