Wall clock time and date at job start Wed Apr 1 2020 04:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42102 * 110.53979 * 2 1 4 4 O 1.42102 * 110.54403 * 223.25440 * 2 1 3 5 5 C 1.76196 * 104.44872 * 111.62557 * 2 1 3 6 6 C 1.38885 * 120.33391 * 90.00252 * 5 2 1 7 7 C 1.38294 * 118.50189 * 180.02562 * 6 5 2 8 8 C 1.39136 * 119.10024 * 359.97438 * 7 6 5 9 9 N 1.39008 * 119.70519 * 179.97438 * 8 7 6 10 10 C 1.46500 * 119.99684 * 184.99967 * 9 8 7 11 11 C 1.50695 * 109.47502 * 270.00250 * 10 9 8 12 12 H 1.08004 * 119.99958 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00341 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00077 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99795 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46802 * 90.00352 * 15 13 11 17 17 H 1.48493 * 109.47055 * 210.00317 * 15 13 11 18 18 H 1.48493 * 109.47303 * 330.00624 * 15 13 11 19 19 C 1.46503 * 119.99990 * 5.00609 * 9 8 7 20 20 C 1.50695 * 109.47313 * 89.99852 * 19 9 8 21 21 C 1.38678 * 120.41675 * 270.25293 * 20 19 9 22 22 C 1.38627 * 118.41930 * 180.24221 * 21 20 19 23 23 C 1.38232 * 119.16085 * 359.75178 * 22 21 20 24 24 N 1.31857 * 120.76541 * 359.97438 * 23 22 21 25 25 C 1.31889 * 121.72235 * 0.02562 * 24 23 22 26 26 N 1.32392 * 120.58841 * 0.27754 * 8 7 6 27 27 C 1.31970 * 121.62266 * 359.43580 * 26 8 7 28 28 H 1.09006 * 109.47423 * 308.37661 * 1 2 3 29 29 H 1.09004 * 109.47364 * 68.37323 * 1 2 3 30 30 H 1.08994 * 109.47542 * 188.37470 * 1 2 3 31 31 H 1.08000 * 120.74592 * 359.97438 * 6 5 2 32 32 H 1.08003 * 120.44719 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47242 * 30.00594 * 10 9 8 34 34 H 1.09009 * 109.46653 * 150.00275 * 10 9 8 35 35 H 0.97001 * 120.00157 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.46632 * 329.99661 * 19 9 8 37 37 H 1.08996 * 109.46728 * 209.99654 * 19 9 8 38 38 H 1.07994 * 120.78944 * 359.96926 * 21 20 19 39 39 H 1.07997 * 120.42083 * 179.72800 * 22 21 20 40 40 H 1.07999 * 119.61954 * 180.02562 * 23 22 21 41 41 H 1.08002 * 119.61237 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.57807 * 180.29033 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 6 2.2536 -0.6288 1.5861 6 6 2.4287 -1.9935 1.7758 7 6 2.7730 -2.4457 3.0365 8 6 2.9321 -1.5235 4.0661 9 7 3.2775 -1.9643 5.3384 10 6 3.3396 -1.0135 6.4512 11 6 4.7304 -0.4413 6.5462 12 1 5.4920 -0.7542 5.8472 13 6 5.0308 0.4817 7.5254 14 7 6.2444 0.9814 7.6079 15 14 3.7135 1.0235 8.7339 16 1 3.7317 0.1295 9.9196 17 1 3.9794 2.4200 9.1628 18 1 2.3821 0.9514 8.0802 19 6 3.5797 -3.3796 5.5663 20 6 5.0529 -3.6187 5.3579 21 6 5.5392 -3.9540 4.1032 22 6 6.9010 -4.1697 3.9594 23 6 7.7238 -4.0392 5.0625 24 7 7.2271 -3.7134 6.2396 25 6 5.9370 -3.5009 6.4133 26 7 2.7514 -0.2305 3.8464 27 6 2.4279 0.2299 2.6526 28 1 -0.3634 0.6380 0.8057 29 1 -0.3634 0.3788 -0.9553 30 1 -0.3634 -1.0166 0.1497 31 1 2.2980 -2.6859 0.9573 32 1 2.9174 -3.5004 3.2191 33 1 2.6260 -0.2076 6.2807 34 1 3.0933 -1.5262 7.3812 35 1 6.4557 1.6311 8.2966 36 1 3.0098 -3.9901 4.8659 37 1 3.3088 -3.6491 6.5871 38 1 4.8722 -4.0493 3.2592 39 1 7.3138 -4.4368 2.9978 40 1 8.7859 -4.2052 4.9587 41 1 5.5669 -3.2361 7.3927 42 1 2.2931 1.2918 2.5094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:40 Heat of formation + Delta-G solvation = 28.485524 kcal Electronic energy + Delta-G solvation = -28171.294672 eV Core-core repulsion = 24244.769799 eV Total energy + Delta-G solvation = -3926.524873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.28585 -39.55352 -37.02994 -36.59943 -35.85991 -33.08758 -32.47950 -31.92525 -31.40378 -30.30683 -29.56397 -28.09278 -25.85793 -23.75884 -23.14080 -23.07149 -21.78823 -20.68108 -18.96497 -17.83422 -17.08003 -16.92124 -16.62741 -16.57986 -16.17534 -15.88167 -15.36271 -15.22616 -14.64436 -14.48879 -13.92620 -13.88362 -13.50562 -13.36561 -13.30453 -13.17874 -13.10931 -12.79798 -12.67290 -12.44082 -12.03669 -11.95335 -11.91285 -11.86917 -11.64079 -11.17528 -10.98102 -10.80796 -10.63394 -10.47502 -9.91167 -9.63345 -9.51269 -9.38629 -9.07748 -8.98239 -8.68495 -8.59130 -7.31766 -6.10620 -4.10377 0.12972 1.17408 1.44198 1.55287 1.64348 2.97351 3.21080 3.28568 3.31290 3.40343 3.78877 4.12487 4.15684 4.24357 4.34290 4.63274 4.67776 4.78998 4.80535 4.90648 4.99069 5.08610 5.16122 5.20906 5.23689 5.33417 5.40666 5.46415 5.54364 5.62971 5.85633 5.91277 5.95778 6.04439 6.13885 6.38215 6.39435 6.53831 6.61175 6.87730 7.05616 7.35505 7.51110 7.74071 8.38468 8.39715 8.50290 8.94268 9.47235 11.02180 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.004140 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.369049 B = 6760.981623 C = 8604.792673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.516 3.484 3 O -0.943 6.943 4 O -0.949 6.949 5 C -0.797 4.797 6 C 0.054 3.946 7 C -0.275 4.275 8 C 0.461 3.539 9 N -0.563 5.563 10 C 0.218 3.782 11 C -0.523 4.523 12 H 0.074 0.926 13 C 0.077 3.923 14 N -0.890 5.890 15 Si 0.870 3.130 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.166 3.834 20 C -0.156 4.156 21 C -0.066 4.066 22 C -0.185 4.185 23 C 0.099 3.901 24 N -0.484 5.484 25 C 0.152 3.848 26 N -0.527 5.527 27 C 0.253 3.747 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.264 0.736 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 -10.107 -11.059 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.696 3.304 3 O -0.941 6.941 4 O -0.946 6.946 5 C -0.892 4.892 6 C 0.028 3.972 7 C -0.301 4.301 8 C 0.223 3.777 9 N -0.266 5.266 10 C 0.098 3.902 11 C -0.561 4.561 12 H 0.093 0.907 13 C -0.126 4.126 14 N -0.528 5.528 15 Si 0.697 3.303 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.190 1.190 19 C 0.042 3.958 20 C -0.159 4.159 21 C -0.092 4.092 22 C -0.205 4.205 23 C -0.058 4.058 24 N -0.192 5.192 25 C -0.006 4.006 26 N -0.243 5.243 27 C 0.087 3.913 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.066 -9.188 -9.857 16.820 hybrid contribution -1.471 -0.333 -0.018 1.509 sum -11.538 -9.521 -9.876 17.925 Atomic orbital electron populations 1.30279 1.27023 1.11688 1.11306 1.04516 0.77246 0.74411 0.74254 1.93571 1.77137 1.36869 1.86480 1.93540 1.77295 1.61899 1.61864 1.30677 1.31339 1.03896 1.23308 1.20810 0.87274 0.93033 0.96102 1.21454 1.14592 1.00195 0.93892 1.18662 0.84542 0.88872 0.85665 1.47175 1.65407 1.07794 1.06196 1.19870 0.99400 0.88158 0.82750 1.21188 0.94433 1.24488 1.16019 0.90750 1.24818 0.95045 0.95553 0.97234 1.69893 1.19190 1.29703 1.33972 0.86956 0.82888 0.78650 0.81794 1.20238 1.21015 1.18989 1.20349 0.90777 0.81775 1.02908 1.21171 0.97903 1.01949 0.94910 1.21443 0.95659 0.95601 0.96504 1.22004 0.94478 1.03782 1.00217 1.22718 1.00028 0.94763 0.88329 1.67729 1.14989 1.11134 1.25320 1.22664 0.87872 0.90813 0.99205 1.67532 1.19488 1.13757 1.23564 1.22279 0.84255 0.99158 0.85590 0.85120 0.85619 0.85346 0.84083 0.84801 0.93456 0.95729 0.92569 0.89969 0.88835 0.85484 0.85379 0.83395 0.82606 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.06 10.80 101.05 1.09 -2.97 16 2 S 2.52 27.46 5.81 -107.50 -0.62 26.84 16 3 O -0.94 -13.61 17.14 -57.54 -0.99 -14.59 16 4 O -0.95 -12.84 17.20 -57.54 -0.99 -13.83 16 5 C -0.80 -10.71 5.67 -39.42 -0.22 -10.93 16 6 C 0.05 0.69 9.58 -39.32 -0.38 0.31 16 7 C -0.28 -3.91 8.54 -39.23 -0.33 -4.25 16 8 C 0.46 8.33 7.37 -155.02 -1.14 7.19 16 9 N -0.56 -10.35 2.56 -176.59 -0.45 -10.80 16 10 C 0.22 4.79 4.26 -5.20 -0.02 4.76 16 11 C -0.52 -13.88 9.39 -34.44 -0.32 -14.21 16 12 H 0.07 2.27 7.82 -52.48 -0.41 1.86 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 15 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 19 C 0.17 2.38 5.44 -5.19 -0.03 2.35 16 20 C -0.16 -2.50 5.48 -104.48 -0.57 -3.07 16 21 C -0.07 -0.96 9.64 -39.28 -0.38 -1.34 16 22 C -0.18 -2.63 10.11 -39.44 -0.40 -3.03 16 23 C 0.10 1.56 11.18 -17.54 -0.20 1.37 16 24 N -0.48 -9.14 10.36 -13.25 -0.14 -9.28 16 25 C 0.15 2.78 10.07 -17.55 -0.18 2.60 16 26 N -0.53 -10.37 9.16 -12.44 -0.11 -10.49 16 27 C 0.25 4.09 10.63 -17.57 -0.19 3.90 16 28 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.14 1.39 7.66 -52.49 -0.40 0.99 16 32 H 0.13 1.52 4.87 -52.48 -0.26 1.27 16 33 H 0.05 1.11 6.51 -51.93 -0.34 0.77 16 34 H 0.02 0.51 7.32 -51.92 -0.38 0.13 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 36 H 0.08 0.91 5.93 -51.93 -0.31 0.60 16 37 H 0.09 1.19 7.85 -51.93 -0.41 0.78 16 38 H 0.13 1.56 6.32 -52.49 -0.33 1.23 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.16 2.88 8.06 -52.49 -0.42 2.46 16 42 H 0.17 2.32 7.57 -52.48 -0.40 1.92 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -37.82 366.77 -9.97 -47.79 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.93 Total: 4.32 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -3.37 Total: -15.27 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.07 Total: -56.60 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -1.98 Total: -28.43 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Atomic # 16 Polarization: 27.46 SS G_CDS: -0.62 Total: 26.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.82 -9.97 -47.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.279 kcal (2) G-P(sol) polarization free energy of solvation -37.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds