Wall clock time and date at job start Wed Apr 1 2020 04:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42102 * 110.53979 * 2 1 4 4 O 1.42102 * 110.54403 * 223.25440 * 2 1 3 5 5 C 1.76196 * 104.44872 * 111.62557 * 2 1 3 6 6 C 1.38885 * 120.33391 * 90.00252 * 5 2 1 7 7 C 1.38294 * 118.50189 * 180.02562 * 6 5 2 8 8 C 1.39136 * 119.10024 * 359.97438 * 7 6 5 9 9 N 1.39008 * 119.70519 * 179.97438 * 8 7 6 10 10 C 1.46500 * 119.99684 * 184.99967 * 9 8 7 11 11 C 1.50695 * 109.47502 * 270.00250 * 10 9 8 12 12 H 1.08004 * 119.99958 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00341 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00077 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99795 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46802 * 90.00352 * 15 13 11 17 17 H 1.48493 * 109.47055 * 210.00317 * 15 13 11 18 18 H 1.48493 * 109.47303 * 330.00624 * 15 13 11 19 19 C 1.46503 * 119.99990 * 5.00609 * 9 8 7 20 20 C 1.50695 * 109.47313 * 89.99852 * 19 9 8 21 21 C 1.38678 * 120.41675 * 270.25293 * 20 19 9 22 22 C 1.38627 * 118.41930 * 180.24221 * 21 20 19 23 23 C 1.38232 * 119.16085 * 359.75178 * 22 21 20 24 24 N 1.31857 * 120.76541 * 359.97438 * 23 22 21 25 25 C 1.31889 * 121.72235 * 0.02562 * 24 23 22 26 26 N 1.32392 * 120.58841 * 0.27754 * 8 7 6 27 27 C 1.31970 * 121.62266 * 359.43580 * 26 8 7 28 28 H 1.09006 * 109.47423 * 308.37661 * 1 2 3 29 29 H 1.09004 * 109.47364 * 68.37323 * 1 2 3 30 30 H 1.08994 * 109.47542 * 188.37470 * 1 2 3 31 31 H 1.08000 * 120.74592 * 359.97438 * 6 5 2 32 32 H 1.08003 * 120.44719 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47242 * 30.00594 * 10 9 8 34 34 H 1.09009 * 109.46653 * 150.00275 * 10 9 8 35 35 H 0.97001 * 120.00157 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.46632 * 329.99661 * 19 9 8 37 37 H 1.08996 * 109.46728 * 209.99654 * 19 9 8 38 38 H 1.07994 * 120.78944 * 359.96926 * 21 20 19 39 39 H 1.07997 * 120.42083 * 179.72800 * 22 21 20 40 40 H 1.07999 * 119.61954 * 180.02562 * 23 22 21 41 41 H 1.08002 * 119.61237 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.57807 * 180.29033 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 6 2.2536 -0.6288 1.5861 6 6 2.4287 -1.9935 1.7758 7 6 2.7730 -2.4457 3.0365 8 6 2.9321 -1.5235 4.0661 9 7 3.2775 -1.9643 5.3384 10 6 3.3396 -1.0135 6.4512 11 6 4.7304 -0.4413 6.5462 12 1 5.4920 -0.7542 5.8472 13 6 5.0308 0.4817 7.5254 14 7 6.2444 0.9814 7.6079 15 14 3.7135 1.0235 8.7339 16 1 3.7317 0.1295 9.9196 17 1 3.9794 2.4200 9.1628 18 1 2.3821 0.9514 8.0802 19 6 3.5797 -3.3796 5.5663 20 6 5.0529 -3.6187 5.3579 21 6 5.5392 -3.9540 4.1032 22 6 6.9010 -4.1697 3.9594 23 6 7.7238 -4.0392 5.0625 24 7 7.2271 -3.7134 6.2396 25 6 5.9370 -3.5009 6.4133 26 7 2.7514 -0.2305 3.8464 27 6 2.4279 0.2299 2.6526 28 1 -0.3634 0.6380 0.8057 29 1 -0.3634 0.3788 -0.9553 30 1 -0.3634 -1.0166 0.1497 31 1 2.2980 -2.6859 0.9573 32 1 2.9174 -3.5004 3.2191 33 1 2.6260 -0.2076 6.2807 34 1 3.0933 -1.5262 7.3812 35 1 6.4557 1.6311 8.2966 36 1 3.0098 -3.9901 4.8659 37 1 3.3088 -3.6491 6.5871 38 1 4.8722 -4.0493 3.2592 39 1 7.3138 -4.4368 2.9978 40 1 8.7859 -4.2052 4.9587 41 1 5.5669 -3.2361 7.3927 42 1 2.2931 1.2918 2.5094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:39 Heat of formation + Delta-G solvation = 0.151546 kcal Electronic energy + Delta-G solvation = -28172.523326 eV Core-core repulsion = 24244.769799 eV Total energy + Delta-G solvation = -3927.753527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50584 -40.77438 -38.01356 -37.90067 -36.84208 -34.86221 -33.94400 -33.14337 -32.59781 -31.70734 -30.18015 -29.62511 -27.15404 -25.13568 -24.50798 -24.29899 -23.15621 -22.00615 -19.91256 -19.05991 -18.89792 -18.06605 -17.92823 -17.79712 -17.12950 -17.02880 -16.59623 -16.40114 -16.10759 -15.72654 -15.29142 -15.17151 -14.78060 -14.52984 -14.33315 -14.28452 -13.97162 -13.90948 -13.84054 -13.76209 -13.50805 -13.26435 -13.09352 -13.02975 -12.89989 -12.57797 -12.29015 -12.13346 -12.06129 -11.73028 -11.68192 -11.19283 -10.79344 -10.74925 -10.68150 -10.34302 -10.22637 -9.90010 -8.64199 -8.24824 -6.27569 -0.69203 0.00297 0.22303 0.40324 0.45934 1.32910 1.37085 1.46069 2.01826 2.18177 2.34447 2.74028 2.97758 3.10649 3.20453 3.31360 3.53672 3.61719 3.85648 3.90810 3.94686 4.04287 4.07939 4.15541 4.20634 4.20999 4.41995 4.44277 4.57859 4.69557 4.77637 4.83947 4.87137 4.92542 4.94387 5.03124 5.04785 5.20563 5.31762 5.50081 5.61788 5.84730 5.90332 6.28473 6.46589 6.74858 7.12418 7.23011 7.35111 8.92087 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.004140 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.369049 B = 6760.981623 C = 8604.792673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.524 3.476 3 O -0.987 6.987 4 O -0.975 6.975 5 C -0.787 4.787 6 C 0.054 3.946 7 C -0.266 4.266 8 C 0.432 3.568 9 N -0.578 5.578 10 C 0.231 3.769 11 C -0.502 4.502 12 H 0.021 0.979 13 C 0.010 3.990 14 N -0.950 5.950 15 Si 0.942 3.058 16 H -0.260 1.260 17 H -0.292 1.292 18 H -0.247 1.247 19 C 0.164 3.836 20 C -0.157 4.157 21 C -0.070 4.070 22 C -0.178 4.178 23 C 0.079 3.921 24 N -0.524 5.524 25 C 0.120 3.880 26 N -0.580 5.580 27 C 0.228 3.772 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.137 0.863 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.052 -12.090 -13.574 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.706 3.294 3 O -0.985 6.985 4 O -0.973 6.973 5 C -0.879 4.879 6 C 0.029 3.971 7 C -0.291 4.291 8 C 0.195 3.805 9 N -0.282 5.282 10 C 0.108 3.892 11 C -0.541 4.541 12 H 0.040 0.960 13 C -0.187 4.187 14 N -0.591 5.591 15 Si 0.766 3.234 16 H -0.185 1.185 17 H -0.218 1.218 18 H -0.171 1.171 19 C 0.041 3.959 20 C -0.161 4.161 21 C -0.096 4.096 22 C -0.198 4.198 23 C -0.078 4.078 24 N -0.233 5.233 25 C -0.037 4.037 26 N -0.297 5.297 27 C 0.065 3.935 28 H 0.165 0.835 29 H 0.171 0.829 30 H 0.175 0.825 31 H 0.197 0.803 32 H 0.184 0.816 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.176 0.824 39 H 0.182 0.818 40 H 0.188 0.812 41 H 0.154 0.846 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.622 -11.199 -12.397 21.556 hybrid contribution -0.379 0.276 0.485 0.675 sum -14.001 -10.923 -11.912 21.383 Atomic orbital electron populations 1.30022 1.19679 1.14278 1.13674 1.04328 0.79784 0.72755 0.72530 1.93522 1.79920 1.38572 1.86443 1.93504 1.79757 1.62221 1.61774 1.31107 1.29115 1.04138 1.23493 1.21342 0.85832 0.93294 0.96649 1.21747 1.13149 1.01071 0.93142 1.19044 0.85826 0.89229 0.86359 1.47012 1.67182 1.08426 1.05589 1.19441 0.95572 0.88987 0.85154 1.21336 0.95635 1.23428 1.13747 0.96018 1.25769 0.97254 0.95975 0.99737 1.70089 1.21972 1.31439 1.35567 0.85808 0.80359 0.77741 0.79538 1.18516 1.21790 1.17056 1.20641 0.89979 0.80259 1.04994 1.21362 0.98668 1.01217 0.94832 1.21863 0.96418 0.94644 0.96666 1.22428 0.94367 1.01925 1.01046 1.23209 1.01573 0.94861 0.88140 1.67617 1.15677 1.12555 1.27474 1.22571 0.88558 0.92945 0.99585 1.67385 1.21094 1.15540 1.25704 1.22462 0.85274 1.00060 0.85731 0.83499 0.82864 0.82549 0.80284 0.81588 0.94750 0.93922 0.92920 0.85848 0.87731 0.82421 0.81761 0.81177 0.84581 0.81345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -4.45 10.80 113.37 1.22 -3.22 16 2 S 2.52 48.49 5.81 -56.49 -0.33 48.16 16 3 O -0.99 -27.67 17.14 -127.65 -2.19 -29.85 16 4 O -0.98 -23.59 17.20 -127.65 -2.20 -25.79 16 5 C -0.79 -19.43 5.67 22.37 0.13 -19.31 16 6 C 0.05 1.19 9.58 22.44 0.22 1.41 16 7 C -0.27 -6.69 8.54 22.50 0.19 -6.50 16 8 C 0.43 15.18 7.37 133.06 0.98 16.16 16 9 N -0.58 -20.92 2.56 -712.60 -1.82 -22.74 16 10 C 0.23 10.24 4.26 85.63 0.36 10.60 16 11 C -0.50 -27.98 9.39 25.60 0.24 -27.74 16 12 H 0.02 1.41 7.82 -2.91 -0.02 1.38 16 13 C 0.01 0.56 5.47 84.66 0.46 1.03 16 14 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 15 Si 0.94 43.56 27.47 68.60 1.88 45.44 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 19 C 0.16 4.44 5.44 85.63 0.47 4.91 16 20 C -0.16 -4.99 5.48 -19.77 -0.11 -5.10 16 21 C -0.07 -1.89 9.64 22.47 0.22 -1.68 16 22 C -0.18 -4.77 10.11 22.36 0.23 -4.55 16 23 C 0.08 2.52 11.18 84.69 0.95 3.47 16 24 N -0.52 -20.90 10.36 -195.83 -2.03 -22.93 16 25 C 0.12 4.65 10.07 84.67 0.85 5.51 16 26 N -0.58 -23.04 9.16 -193.26 -1.77 -24.81 16 27 C 0.23 7.33 10.63 84.62 0.90 8.23 16 28 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.18 2.56 7.66 -2.91 -0.02 2.54 16 32 H 0.17 2.94 4.87 -2.91 -0.01 2.93 16 33 H 0.03 1.62 6.51 -2.39 -0.02 1.61 16 34 H 0.04 1.74 7.32 -2.38 -0.02 1.72 16 35 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.12 2.25 5.93 -2.39 -0.01 2.24 16 37 H 0.10 2.54 7.85 -2.39 -0.02 2.52 16 38 H 0.16 3.22 6.32 -2.91 -0.02 3.20 16 39 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.14 5.52 8.06 -2.91 -0.02 5.50 16 42 H 0.17 4.92 7.57 -2.91 -0.02 4.90 16 Total: -1.00 -90.71 366.77 0.16 -90.55 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.00 Total: 19.10 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 7.31 Total: -16.79 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -5.32 Total: -130.83 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -4.38 Total: -55.64 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Atomic # 16 Polarization: 48.49 SS G_CDS: -0.33 Total: 48.16 kcal Total: -90.71 0.16 -90.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.705 kcal (2) G-P(sol) polarization free energy of solvation -90.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds