Wall clock time and date at job start Wed Apr 1 2020 04:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81396 * 109.47394 * 2 1 4 4 O 1.42101 * 110.54227 * 68.37429 * 3 2 1 5 5 O 1.42098 * 110.54287 * 291.62634 * 3 2 1 6 6 C 1.76196 * 104.44815 * 179.97438 * 3 2 1 7 7 C 1.38241 * 119.99574 * 90.00196 * 6 3 2 8 8 C 1.38240 * 119.99850 * 180.02562 * 7 6 3 9 9 C 1.38237 * 119.99526 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99561 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47283 * 90.00036 * 10 9 8 12 12 C 1.38804 * 120.00247 * 180.02562 * 11 10 9 13 13 C 1.40081 * 120.75769 * 180.02562 * 12 11 10 14 14 N 1.31668 * 119.13739 * 180.02562 * 13 12 11 15 15 C 1.33595 * 120.78831 * 359.97438 * 14 13 12 16 16 C 1.41153 * 119.16706 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00184 * 359.97438 * 16 15 14 18 18 C 1.40045 * 119.99823 * 180.02562 * 16 15 14 19 19 N 1.30730 * 120.00049 * 359.72575 * 18 16 15 20 20 Si 1.86795 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47273 * 59.99791 * 20 18 16 22 22 H 1.48505 * 109.47234 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47290 * 299.99987 * 20 18 16 24 24 N 1.33599 * 121.65831 * 0.27830 * 15 14 13 25 25 C 1.31651 * 120.79256 * 359.43897 * 24 15 14 26 26 C 1.38229 * 120.00330 * 0.25492 * 9 8 7 27 27 C 1.38232 * 120.00280 * 270.01622 * 6 3 2 28 28 H 1.08998 * 109.46880 * 300.00113 * 1 2 3 29 29 H 1.09004 * 109.46648 * 59.99942 * 1 2 3 30 30 H 1.09000 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47103 * 239.99496 * 2 1 3 32 32 H 1.09004 * 109.46648 * 120.00058 * 2 1 3 33 33 H 1.07997 * 120.00401 * 359.97438 * 7 6 3 34 34 H 1.07997 * 119.99814 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.47018 * 330.00144 * 10 9 8 36 36 H 1.08998 * 109.47171 * 210.00350 * 10 9 8 37 37 H 0.97000 * 120.00052 * 0.02562 * 11 10 9 38 38 H 1.07995 * 120.43433 * 359.97438 * 13 12 11 39 39 H 0.97000 * 120.00283 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.43562 * 180.25207 * 25 24 15 41 41 H 1.08005 * 120.00102 * 179.72662 * 26 9 8 42 42 H 1.08000 * 119.99992 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8387 2.3438 -1.2370 6 6 3.8900 1.5558 0.0008 7 6 4.5789 1.4952 -1.1962 8 6 5.9560 1.3735 -1.1957 9 6 6.6440 1.3131 0.0018 10 6 8.1451 1.1799 0.0024 11 7 8.7536 2.5125 0.0019 12 6 10.1353 2.6446 0.0018 13 6 10.7339 3.9111 0.0018 14 7 12.0477 3.9992 0.0011 15 6 12.8068 2.8999 0.0010 16 6 14.2119 3.0342 0.0008 17 1 14.6605 4.0167 0.0004 18 6 15.0244 1.8935 0.0001 19 7 14.4814 0.7043 0.0050 20 14 16.8838 2.0712 0.0006 21 1 17.3098 2.8142 1.2137 22 1 17.5098 0.7246 -0.0009 23 1 17.3103 2.8162 -1.2112 24 7 12.2695 1.6768 -0.0041 25 6 10.9631 1.5145 0.0020 26 6 5.9546 1.3690 1.1986 27 6 4.5780 1.4951 1.1982 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.0414 1.5419 -2.1317 34 1 6.4942 1.3257 -2.1308 35 1 8.4619 0.6355 -0.8871 36 1 8.4613 0.6364 0.8928 37 1 8.1909 3.3027 0.0016 38 1 10.1259 4.8036 0.0015 39 1 15.0441 -0.0858 0.0049 40 1 10.5349 0.5230 0.0019 41 1 6.4917 1.3174 2.1342 42 1 4.0397 1.5419 2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170323793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:24 Heat of formation + Delta-G solvation = 9.992622 kcal Electronic energy + Delta-G solvation = -26156.987983 eV Core-core repulsion = 22229.661198 eV Total energy + Delta-G solvation = -3927.326785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.79155 -38.92839 -37.45525 -36.30700 -35.72082 -33.69580 -33.54708 -32.02655 -31.73477 -31.36598 -29.04979 -26.70325 -24.87532 -24.44526 -23.18022 -23.08962 -21.83908 -20.96320 -19.35183 -18.27273 -17.83919 -16.94840 -16.62769 -16.58807 -15.76420 -15.59732 -15.37689 -15.09345 -14.70398 -14.59954 -14.35361 -14.00587 -13.91775 -13.74255 -13.52957 -13.10161 -13.01194 -12.66670 -12.64601 -12.42757 -12.33646 -12.25050 -12.11214 -11.82999 -11.51636 -11.23413 -11.21592 -11.20311 -10.81404 -10.58222 -10.25088 -9.88947 -9.66533 -9.34151 -9.33075 -9.21179 -8.95019 -7.29399 -6.84712 -6.43528 -4.40835 -0.36160 0.45840 1.00541 2.49112 2.71466 2.88321 3.04531 3.10709 3.14199 3.19473 3.52844 3.69396 3.97386 4.07492 4.21747 4.27632 4.47988 4.53506 4.59102 4.64270 4.73988 4.96279 5.03278 5.11069 5.13061 5.36418 5.37542 5.44155 5.69503 5.70541 5.75703 5.76430 5.83983 5.92214 5.96778 6.23716 6.27336 6.41428 6.52556 7.05382 7.11720 7.33871 8.04855 8.24413 8.42360 8.54028 8.71732 9.18351 10.21023 10.36886 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.039077 B = 0.001694 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.354253 B =16527.632240 C =16766.281431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.609 4.609 3 S 2.497 3.503 4 O -0.937 6.937 5 O -0.937 6.937 6 C -0.662 4.662 7 C -0.027 4.027 8 C -0.122 4.122 9 C -0.036 4.036 10 C 0.169 3.831 11 N -0.747 5.747 12 C -0.044 4.044 13 C 0.107 3.893 14 N -0.566 5.566 15 C 0.369 3.631 16 C -0.412 4.412 17 H 0.089 0.911 18 C 0.068 3.932 19 N -0.725 5.725 20 Si 0.916 3.084 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.265 1.265 24 N -0.476 5.476 25 C 0.102 3.898 26 C -0.123 4.123 27 C -0.027 4.027 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.387 0.613 38 H 0.126 0.874 39 H 0.272 0.728 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.696 -6.681 0.003 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.738 4.738 3 S 2.677 3.323 4 O -0.934 6.934 5 O -0.934 6.934 6 C -0.750 4.750 7 C -0.046 4.046 8 C -0.142 4.142 9 C -0.037 4.037 10 C 0.044 3.956 11 N -0.386 5.386 12 C -0.148 4.148 13 C -0.068 4.068 14 N -0.285 5.285 15 C 0.128 3.872 16 C -0.449 4.449 17 H 0.107 0.893 18 C -0.157 4.157 19 N -0.349 5.349 20 Si 0.740 3.260 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.189 1.189 24 N -0.193 5.193 25 C -0.075 4.075 26 C -0.142 4.142 27 C -0.046 4.046 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.220 0.780 38 H 0.144 0.856 39 H 0.083 0.917 40 H 0.143 0.857 41 H 0.154 0.846 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.979 -6.257 -0.001 24.782 hybrid contribution 0.196 -0.583 0.001 0.615 sum -23.783 -6.840 0.001 24.747 Atomic orbital electron populations 1.21573 0.90254 1.05316 1.03772 1.30206 1.07112 1.24291 1.12212 1.05448 0.74462 0.77643 0.74773 1.93576 1.83434 1.71925 1.44476 1.93576 1.83427 1.71923 1.44482 1.30465 1.25455 1.19411 0.99638 1.20942 0.94827 0.92321 0.96527 1.21303 0.94018 1.00413 0.98446 1.20450 0.96330 0.93561 0.93312 1.20052 0.86212 0.87571 1.01763 1.43422 1.02698 1.04451 1.87984 1.19156 0.83870 0.96908 1.14876 1.22193 0.91830 0.93634 0.99117 1.68570 1.04298 1.34197 1.21416 1.19811 0.94367 0.81962 0.91013 1.19074 0.87959 0.94181 1.43694 0.89328 1.26009 1.01227 0.94798 0.93645 1.70131 1.36678 0.98253 1.29837 0.86262 0.81609 0.78215 0.79935 1.18931 1.20326 1.18937 1.69277 1.08634 1.25450 1.15890 1.22674 0.90662 0.95599 0.98550 1.21302 0.94017 1.00418 0.98449 1.20938 0.94834 0.92306 0.96522 0.90711 0.90717 0.89684 0.84581 0.84580 0.84100 0.84630 0.92011 0.92015 0.77972 0.85647 0.91668 0.85734 0.84630 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.92 37.16 0.37 -0.23 16 2 C -0.61 -2.50 6.70 37.16 0.25 -2.25 16 3 S 2.50 20.14 5.16 -107.50 -0.55 19.58 16 4 O -0.94 -10.32 17.12 -57.54 -0.99 -11.31 16 5 O -0.94 -10.32 17.13 -57.54 -0.99 -11.31 16 6 C -0.66 -6.01 5.66 -39.58 -0.22 -6.24 16 7 C -0.03 -0.25 9.47 -39.58 -0.37 -0.63 16 8 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 9 C -0.04 -0.39 5.25 -104.62 -0.55 -0.94 16 10 C 0.17 2.19 5.06 -5.19 -0.03 2.17 16 11 N -0.75 -11.83 5.70 -59.41 -0.34 -12.17 16 12 C -0.04 -0.91 6.72 -83.32 -0.56 -1.47 16 13 C 0.11 2.41 11.20 -16.93 -0.19 2.22 16 14 N -0.57 -15.01 10.34 -12.49 -0.13 -15.14 16 15 C 0.37 10.49 7.35 -158.23 -1.16 9.32 16 16 C -0.41 -11.49 9.35 -37.80 -0.35 -11.84 16 17 H 0.09 2.38 7.85 -52.49 -0.41 1.97 16 18 C 0.07 1.76 5.50 -17.34 -0.10 1.66 16 19 N -0.73 -19.31 11.41 55.55 0.63 -18.68 16 20 Si 0.92 18.92 29.56 -169.99 -5.02 13.90 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 N -0.48 -13.05 7.84 -12.49 -0.10 -13.15 16 25 C 0.10 2.36 10.58 -16.94 -0.18 2.18 16 26 C -0.12 -1.23 9.70 -39.59 -0.38 -1.62 16 27 C -0.03 -0.25 9.47 -39.58 -0.37 -0.63 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.14 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.14 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.14 1.05 7.57 -52.49 -0.40 0.65 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.06 0.81 7.93 -51.93 -0.41 0.39 16 36 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 37 H 0.39 5.61 8.49 -40.82 -0.35 5.27 16 38 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 39 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 40 H 0.13 2.54 6.88 -52.49 -0.36 2.18 16 41 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.14 1.05 7.57 -52.49 -0.40 0.65 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -35.73 374.61 -11.33 -47.06 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.25 Total: 5.47 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -4.24 Total: -9.90 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.07 Total: -59.14 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -1.97 Total: -22.62 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Atomic # 16 Polarization: 20.14 SS G_CDS: -0.55 Total: 19.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.73 -11.33 -47.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170323793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.052 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds