Wall clock time and date at job start Wed Apr 1 2020 04:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81396 * 109.47394 * 2 1 4 4 O 1.42101 * 110.54227 * 68.37429 * 3 2 1 5 5 O 1.42098 * 110.54287 * 291.62634 * 3 2 1 6 6 C 1.76196 * 104.44815 * 179.97438 * 3 2 1 7 7 C 1.38241 * 119.99574 * 90.00196 * 6 3 2 8 8 C 1.38240 * 119.99850 * 180.02562 * 7 6 3 9 9 C 1.38237 * 119.99526 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99561 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47283 * 90.00036 * 10 9 8 12 12 C 1.38804 * 120.00247 * 180.02562 * 11 10 9 13 13 C 1.40081 * 120.75769 * 180.02562 * 12 11 10 14 14 N 1.31668 * 119.13739 * 180.02562 * 13 12 11 15 15 C 1.33595 * 120.78831 * 359.97438 * 14 13 12 16 16 C 1.41153 * 119.16706 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00184 * 359.97438 * 16 15 14 18 18 C 1.40045 * 119.99823 * 180.02562 * 16 15 14 19 19 N 1.30730 * 120.00049 * 359.72575 * 18 16 15 20 20 Si 1.86795 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47273 * 59.99791 * 20 18 16 22 22 H 1.48505 * 109.47234 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47290 * 299.99987 * 20 18 16 24 24 N 1.33599 * 121.65831 * 0.27830 * 15 14 13 25 25 C 1.31651 * 120.79256 * 359.43897 * 24 15 14 26 26 C 1.38229 * 120.00330 * 0.25492 * 9 8 7 27 27 C 1.38232 * 120.00280 * 270.01622 * 6 3 2 28 28 H 1.08998 * 109.46880 * 300.00113 * 1 2 3 29 29 H 1.09004 * 109.46648 * 59.99942 * 1 2 3 30 30 H 1.09000 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47103 * 239.99496 * 2 1 3 32 32 H 1.09004 * 109.46648 * 120.00058 * 2 1 3 33 33 H 1.07997 * 120.00401 * 359.97438 * 7 6 3 34 34 H 1.07997 * 119.99814 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.47018 * 330.00144 * 10 9 8 36 36 H 1.08998 * 109.47171 * 210.00350 * 10 9 8 37 37 H 0.97000 * 120.00052 * 0.02562 * 11 10 9 38 38 H 1.07995 * 120.43433 * 359.97438 * 13 12 11 39 39 H 0.97000 * 120.00283 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.43562 * 180.25207 * 25 24 15 41 41 H 1.08005 * 120.00102 * 179.72662 * 26 9 8 42 42 H 1.08000 * 119.99992 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8387 2.3438 -1.2370 6 6 3.8900 1.5558 0.0008 7 6 4.5789 1.4952 -1.1962 8 6 5.9560 1.3735 -1.1957 9 6 6.6440 1.3131 0.0018 10 6 8.1451 1.1799 0.0024 11 7 8.7536 2.5125 0.0019 12 6 10.1353 2.6446 0.0018 13 6 10.7339 3.9111 0.0018 14 7 12.0477 3.9992 0.0011 15 6 12.8068 2.8999 0.0010 16 6 14.2119 3.0342 0.0008 17 1 14.6605 4.0167 0.0004 18 6 15.0244 1.8935 0.0001 19 7 14.4814 0.7043 0.0050 20 14 16.8838 2.0712 0.0006 21 1 17.3098 2.8142 1.2137 22 1 17.5098 0.7246 -0.0009 23 1 17.3103 2.8162 -1.2112 24 7 12.2695 1.6768 -0.0041 25 6 10.9631 1.5145 0.0020 26 6 5.9546 1.3690 1.1986 27 6 4.5780 1.4951 1.1982 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.0414 1.5419 -2.1317 34 1 6.4942 1.3257 -2.1308 35 1 8.4619 0.6355 -0.8871 36 1 8.4613 0.6364 0.8928 37 1 8.1909 3.3027 0.0016 38 1 10.1259 4.8036 0.0015 39 1 15.0441 -0.0858 0.0049 40 1 10.5349 0.5230 0.0019 41 1 6.4917 1.3174 2.1342 42 1 4.0397 1.5419 2.1333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170323793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:24 Heat of formation + Delta-G solvation = -15.357425 kcal Electronic energy + Delta-G solvation = -26158.087244 eV Core-core repulsion = 22229.661198 eV Total energy + Delta-G solvation = -3928.426046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97278 -40.39912 -38.18206 -37.17663 -36.98816 -35.33457 -34.02452 -33.67483 -33.17763 -32.10061 -30.68350 -28.12470 -26.35864 -25.04067 -24.64544 -23.91929 -23.23165 -22.36351 -20.00761 -19.73674 -18.97787 -18.35894 -17.37114 -17.30840 -17.25787 -17.06985 -16.29380 -16.21116 -16.05067 -15.58225 -15.24002 -15.14749 -15.10069 -14.58243 -14.43553 -14.22882 -14.04438 -13.90498 -13.71788 -13.37631 -13.19221 -13.08078 -13.00562 -12.96605 -12.86601 -12.52466 -12.37688 -12.26180 -11.96448 -11.88150 -11.52325 -11.38737 -11.31254 -11.15470 -10.74004 -10.32550 -10.07976 -9.22603 -8.53741 -8.31562 -6.34081 -0.94597 -0.31921 0.26061 0.87209 1.01631 1.43233 1.56033 1.56327 1.86809 2.25065 2.27407 2.85030 2.89494 3.03452 3.12968 3.57018 3.69254 3.73435 3.90851 3.91640 3.98198 4.02612 4.10682 4.26890 4.29826 4.33951 4.41305 4.55379 4.59150 4.65282 4.75584 4.76179 4.86880 4.94722 5.03051 5.06743 5.15148 5.17697 5.32623 5.44826 5.54962 5.77623 6.23500 6.46715 6.57864 6.79084 6.98740 7.31501 8.29496 8.50472 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.039077 B = 0.001694 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.354253 B =16527.632240 C =16766.281431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.580 4.580 3 S 2.496 3.504 4 O -0.973 6.973 5 O -0.973 6.973 6 C -0.660 4.660 7 C -0.034 4.034 8 C -0.127 4.127 9 C -0.047 4.047 10 C 0.169 3.831 11 N -0.734 5.734 12 C -0.007 4.007 13 C 0.086 3.914 14 N -0.589 5.589 15 C 0.337 3.663 16 C -0.458 4.458 17 H 0.081 0.919 18 C 0.026 3.974 19 N -0.762 5.762 20 Si 0.994 3.006 21 H -0.261 1.261 22 H -0.264 1.264 23 H -0.261 1.261 24 N -0.505 5.505 25 C 0.079 3.921 26 C -0.127 4.127 27 C -0.034 4.034 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.160 0.840 39 H 0.279 0.721 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.521 -8.056 0.006 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.714 4.714 3 S 2.680 3.320 4 O -0.971 6.971 5 O -0.971 6.971 6 C -0.747 4.747 7 C -0.053 4.053 8 C -0.146 4.146 9 C -0.048 4.048 10 C 0.044 3.956 11 N -0.371 5.371 12 C -0.113 4.113 13 C -0.087 4.087 14 N -0.308 5.308 15 C 0.094 3.906 16 C -0.495 4.495 17 H 0.099 0.901 18 C -0.195 4.195 19 N -0.387 5.387 20 Si 0.814 3.186 21 H -0.185 1.185 22 H -0.188 1.188 23 H -0.185 1.185 24 N -0.222 5.222 25 C -0.097 4.097 26 C -0.146 4.146 27 C -0.052 4.052 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.174 0.826 34 H 0.161 0.839 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.177 0.823 39 H 0.090 0.910 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.885 -7.595 0.002 26.976 hybrid contribution 0.349 -0.197 0.000 0.400 sum -25.536 -7.792 0.002 26.698 Atomic orbital electron populations 1.21786 0.89883 1.06791 1.03997 1.30011 1.07202 1.19372 1.14791 1.05405 0.73770 0.79543 0.73268 1.93528 1.83597 1.74459 1.45472 1.93528 1.83590 1.74458 1.45478 1.30653 1.26149 1.18304 0.99566 1.21177 0.94656 0.92046 0.97379 1.21440 0.94500 1.00160 0.98482 1.20228 0.94863 0.95579 0.94109 1.20148 0.87699 0.85729 1.01994 1.43517 1.00790 1.06548 1.86259 1.19125 0.85922 0.95677 1.10573 1.22771 0.91163 0.95634 0.99167 1.68545 1.06110 1.34102 1.22092 1.20121 0.95156 0.82785 0.92551 1.19336 0.88717 0.94795 1.46646 0.90066 1.26885 1.06159 0.93894 0.92565 1.70202 1.38714 0.99009 1.30725 0.85103 0.74901 0.78721 0.79914 1.18543 1.18780 1.18547 1.69197 1.10685 1.25410 1.16935 1.23100 0.90013 0.97438 0.99100 1.21438 0.94495 1.00155 0.98486 1.21173 0.94667 0.92033 0.97373 0.90672 0.90679 0.87412 0.82093 0.82092 0.82554 0.83893 0.91704 0.91698 0.76769 0.82337 0.91005 0.83339 0.83881 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 9.92 71.98 0.71 -0.09 16 2 C -0.58 -2.73 6.70 71.98 0.48 -2.25 16 3 S 2.50 36.30 5.16 -56.49 -0.29 36.01 16 4 O -0.97 -20.58 17.12 -127.65 -2.19 -22.76 16 5 O -0.97 -20.58 17.13 -127.65 -2.19 -22.77 16 6 C -0.66 -10.71 5.66 22.27 0.13 -10.58 16 7 C -0.03 -0.56 9.47 22.27 0.21 -0.35 16 8 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 9 C -0.05 -0.94 5.25 -19.87 -0.10 -1.04 16 10 C 0.17 4.05 5.06 85.63 0.43 4.49 16 11 N -0.73 -21.86 5.70 -341.86 -1.95 -23.81 16 12 C -0.01 -0.28 6.72 38.93 0.26 -0.02 16 13 C 0.09 3.86 11.20 85.16 0.95 4.81 16 14 N -0.59 -31.98 10.34 -193.42 -2.00 -33.98 16 15 C 0.34 19.82 7.35 134.95 0.99 20.82 16 16 C -0.46 -26.57 9.35 23.42 0.22 -26.35 16 17 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 18 C 0.03 1.39 5.50 85.30 0.47 1.85 16 19 N -0.76 -41.61 11.41 21.84 0.25 -41.36 16 20 Si 0.99 39.51 29.56 68.60 2.03 41.54 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 N -0.51 -28.43 7.84 -193.43 -1.52 -29.95 16 25 C 0.08 3.67 10.58 85.17 0.90 4.57 16 26 C -0.13 -2.29 9.70 22.27 0.22 -2.08 16 27 C -0.03 -0.56 9.47 22.27 0.21 -0.35 16 28 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.16 2.02 7.57 -2.91 -0.02 2.00 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.06 1.57 7.93 -2.39 -0.02 1.55 16 36 H 0.06 1.57 7.93 -2.39 -0.02 1.55 16 37 H 0.40 10.60 8.49 -92.71 -0.79 9.81 16 38 H 0.16 5.83 8.06 -2.91 -0.02 5.81 16 39 H 0.28 13.70 8.29 -92.71 -0.77 12.93 16 40 H 0.15 5.96 6.88 -2.91 -0.02 5.94 16 41 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.16 2.02 7.57 -2.91 -0.02 2.00 16 Total: -1.00 -80.62 374.61 -1.28 -81.89 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.27 Total: 23.84 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 6.30 Total: -8.65 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -5.21 Total: -129.10 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -4.37 Total: -45.53 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 36.30 SS G_CDS: -0.29 Total: 36.01 kcal Total: -80.62 -1.28 -81.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170323793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.537 kcal (2) G-P(sol) polarization free energy of solvation -80.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds