Wall clock time and date at job start Wed Apr 1 2020 04:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.47100 * 2 1 4 4 C 1.86301 * 109.47388 * 240.00125 * 2 1 3 5 5 C 1.86799 * 109.47080 * 120.00238 * 2 1 3 6 6 C 1.38342 * 120.44906 * 262.05946 * 5 2 1 7 7 C 1.38838 * 118.50681 * 179.75689 * 6 5 2 8 8 C 1.38066 * 119.32600 * 0.50954 * 7 6 5 9 9 C 1.50706 * 119.57510 * 179.75854 * 8 7 6 10 10 F 1.39899 * 109.46998 * 184.72755 * 9 8 7 11 11 F 1.39898 * 109.46980 * 64.72575 * 9 8 7 12 12 F 1.39901 * 109.46589 * 304.72463 * 9 8 7 13 13 N 1.31944 * 120.85584 * 359.47882 * 8 7 6 14 14 C 1.32429 * 121.61973 * 0.27668 * 13 8 7 15 15 N 1.39004 * 119.70013 * 180.02562 * 14 13 8 16 16 C 1.46498 * 120.00440 * 354.27671 * 15 14 13 17 17 C 1.50700 * 109.47011 * 155.00442 * 16 15 14 18 18 N 1.27939 * 120.00196 * 352.21599 * 17 16 15 19 19 Si 1.86796 * 119.99964 * 172.22267 * 17 16 15 20 20 H 1.48501 * 109.46994 * 5.61172 * 19 17 16 21 21 H 1.48499 * 109.47315 * 125.60868 * 19 17 16 22 22 H 1.48499 * 109.47140 * 245.60962 * 19 17 16 23 23 C 1.50694 * 109.46943 * 275.00077 * 16 15 14 24 24 N 1.34780 * 119.99873 * 152.59826 * 23 16 15 25 25 O 1.21282 * 120.00710 * 332.59481 * 23 16 15 26 26 H 1.08996 * 109.47456 * 299.99702 * 1 2 3 27 27 H 1.09005 * 109.46962 * 60.00186 * 1 2 3 28 28 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47051 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47081 * 300.00132 * 3 2 1 31 31 H 1.09009 * 109.46903 * 60.00016 * 3 2 1 32 32 H 1.09004 * 109.46914 * 310.92300 * 4 2 1 33 33 H 1.09003 * 109.47285 * 70.91862 * 4 2 1 34 34 H 1.08998 * 109.47743 * 190.92194 * 4 2 1 35 35 H 1.08004 * 120.74932 * 0.04675 * 6 5 2 36 36 H 1.07999 * 120.34029 * 180.26229 * 7 6 5 37 37 H 0.97003 * 119.99624 * 174.27845 * 15 14 13 38 38 H 1.08999 * 109.47103 * 35.00285 * 16 15 14 39 39 H 0.97000 * 120.00776 * 180.02562 * 18 17 16 40 40 H 0.96996 * 120.00111 * 355.51911 * 24 23 16 41 41 H 0.97005 * 120.00173 * 175.52532 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.8747 -0.1608 2.6407 7 6 3.3262 -0.8566 3.7540 8 6 3.3836 -2.2355 3.7122 9 6 3.8780 -2.9961 4.9156 10 9 3.9507 -4.3590 4.6082 11 9 2.9944 -2.8053 5.9833 12 9 5.1480 -2.5302 5.2722 13 7 3.0060 -2.8961 2.6343 14 6 2.5650 -2.2690 1.5546 15 7 2.1769 -3.0049 0.4410 16 6 2.3734 -4.4564 0.4173 17 6 1.3816 -5.0822 -0.5291 18 7 0.4509 -4.3705 -1.0430 19 14 1.5108 -6.8972 -0.9516 20 1 2.5780 -7.5220 -0.1295 21 1 0.2144 -7.5646 -0.6699 22 1 1.8426 -7.0479 -2.3912 23 6 3.7737 -4.7662 -0.0456 24 7 4.3784 -5.9036 0.3510 25 8 4.3565 -3.9922 -0.7751 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1206 2.2703 0.8901 32 1 1.9705 -1.8341 -1.6239 33 1 2.2885 -0.2644 -2.4004 34 1 3.5565 -1.0499 -1.4292 35 1 2.8238 0.9180 2.6471 36 1 3.6333 -0.3246 4.6423 37 1 1.7759 -2.5573 -0.3205 38 1 2.2243 -4.8597 1.4189 39 1 -0.1878 -4.7733 -1.6519 40 1 3.9387 -6.4909 0.9854 41 1 5.2535 -6.1348 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170532812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:33 Heat of formation + Delta-G solvation = -137.051427 kcal Electronic energy + Delta-G solvation = -30019.044656 eV Core-core repulsion = 25450.282659 eV Total energy + Delta-G solvation = -4568.761997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.00688 -48.54479 -48.45745 -41.61465 -40.55252 -37.82352 -35.73437 -34.74693 -33.64140 -31.86279 -29.85202 -29.34915 -28.45284 -28.19510 -26.97327 -23.89340 -23.59281 -23.01599 -20.97837 -19.88536 -19.39427 -19.37925 -18.85958 -18.05919 -17.77931 -17.47209 -17.14918 -16.68058 -16.04016 -15.66331 -15.44666 -15.34254 -15.20030 -14.91729 -14.89214 -14.76867 -14.63052 -14.61451 -14.50609 -14.20717 -13.99483 -13.95485 -13.88984 -13.70657 -13.32548 -13.28655 -13.19850 -13.07580 -12.95193 -12.55340 -12.00895 -11.92469 -11.71188 -11.35197 -10.99075 -10.87282 -10.62940 -10.59628 -10.47068 -10.31307 -8.87472 -0.24850 0.35907 0.41068 0.66073 1.11800 1.37868 1.39965 1.47672 1.54988 1.64276 1.73107 1.84214 2.10499 2.43694 2.45072 2.68638 2.72422 3.08862 3.19184 3.51545 3.74523 3.85252 4.01044 4.06012 4.15340 4.31976 4.51833 4.64344 4.65864 4.68055 4.72716 4.74090 4.77336 4.79705 5.00355 5.31137 5.41837 5.51089 5.56501 5.72579 5.87313 6.20070 6.26236 6.48050 6.96998 7.18096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 1.052 2.948 3 C -0.445 4.445 4 C -0.454 4.454 5 C -0.452 4.452 6 C -0.001 4.001 7 C -0.189 4.189 8 C 0.096 3.904 9 C 0.520 3.480 10 F -0.165 7.165 11 F -0.171 7.171 12 F -0.171 7.171 13 N -0.519 5.519 14 C 0.436 3.564 15 N -0.689 5.689 16 C 0.163 3.837 17 C -0.019 4.019 18 N -0.613 5.613 19 Si 0.938 3.062 20 H -0.221 1.221 21 H -0.234 1.234 22 H -0.233 1.233 23 C 0.509 3.491 24 N -0.850 5.850 25 O -0.519 6.519 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.425 0.575 38 H 0.136 0.864 39 H 0.350 0.650 40 H 0.405 0.595 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -1.341 -1.524 3.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.244 2.756 3 C -0.554 4.554 4 C -0.562 4.562 5 C -0.499 4.499 6 C -0.027 4.027 7 C -0.213 4.213 8 C -0.043 4.043 9 C 0.465 3.535 10 F -0.146 7.146 11 F -0.152 7.152 12 F -0.152 7.152 13 N -0.237 5.237 14 C 0.200 3.800 15 N -0.330 5.330 16 C 0.052 3.948 17 C -0.268 4.268 18 N -0.227 5.227 19 Si 0.751 3.249 20 H -0.143 1.143 21 H -0.157 1.157 22 H -0.156 1.156 23 C 0.290 3.710 24 N -0.417 5.417 25 O -0.393 6.393 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.274 0.726 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.235 0.765 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.495 -1.730 -2.076 3.678 hybrid contribution 0.005 -0.079 0.136 0.157 sum -2.490 -1.809 -1.940 3.638 Atomic orbital electron populations 1.26092 1.19624 1.05047 1.04786 0.78293 0.67364 0.66812 0.63156 1.26058 1.06656 1.17708 1.04935 1.26362 1.07522 1.07210 1.15076 1.27885 1.11023 0.97419 1.13570 1.21267 0.90392 1.00513 0.90509 1.21553 1.05115 0.93232 1.01350 1.20449 0.99958 0.91534 0.92377 1.17975 0.75441 0.77700 0.82409 1.93212 1.96004 1.32479 1.92903 1.93243 1.68696 1.94983 1.58292 1.93242 1.40791 1.88525 1.92640 1.66441 1.17202 1.40480 0.99569 1.17947 0.88521 0.87992 0.85575 1.44685 1.66297 1.04760 1.17299 1.20077 0.90472 0.83479 1.00816 1.30360 0.94360 1.07068 0.95007 1.67857 1.03803 1.42942 1.08107 0.85608 0.83663 0.72296 0.83346 1.14298 1.15719 1.15591 1.20800 0.88432 0.81435 0.80381 1.44096 1.23902 1.24446 1.49235 1.90771 1.65892 1.46813 1.35787 0.90933 0.90629 0.90789 0.90768 0.90533 0.90903 0.91107 0.90342 0.90120 0.83619 0.84034 0.72639 0.84680 0.83182 0.76504 0.76207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.55 8.65 101.05 0.87 1.43 16 2 Si 1.05 -1.66 11.40 -169.99 -1.94 -3.60 16 3 C -0.44 0.86 8.37 101.05 0.85 1.71 16 4 C -0.45 -0.07 8.07 101.05 0.82 0.75 16 5 C -0.45 -0.40 4.60 -39.23 -0.18 -0.58 16 6 C 0.00 0.00 9.40 -39.32 -0.37 -0.37 16 7 C -0.19 -0.21 9.60 -39.42 -0.38 -0.59 16 8 C 0.10 0.29 6.26 -82.60 -0.52 -0.23 16 9 C 0.52 1.49 3.31 36.01 0.12 1.61 16 10 F -0.16 -0.55 16.85 2.25 0.04 -0.51 16 11 F -0.17 -0.49 17.28 2.25 0.04 -0.45 16 12 F -0.17 -0.51 17.16 2.25 0.04 -0.47 16 13 N -0.52 -1.80 8.54 -8.67 -0.07 -1.87 16 14 C 0.44 1.19 7.32 -155.01 -1.13 0.05 16 15 N -0.69 -1.30 4.28 -56.20 -0.24 -1.54 16 16 C 0.16 0.11 2.58 -70.24 -0.18 -0.07 16 17 C -0.02 0.02 5.38 -13.90 -0.07 -0.06 16 18 N -0.61 0.39 12.52 56.23 0.70 1.10 16 19 Si 0.94 -2.67 27.86 -169.99 -4.74 -7.40 16 20 H -0.22 0.96 5.70 56.52 0.32 1.28 16 21 H -0.23 0.58 7.11 56.52 0.40 0.98 16 22 H -0.23 0.36 7.11 56.52 0.40 0.76 16 23 C 0.51 0.85 6.38 -10.99 -0.07 0.78 16 24 N -0.85 1.50 7.67 31.22 0.24 1.74 16 25 O -0.52 -2.86 17.49 5.56 0.10 -2.77 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.08 -0.16 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.20 7.73 -51.92 -0.40 -0.60 16 32 H 0.07 0.06 5.74 -51.93 -0.30 -0.24 16 33 H 0.08 -0.07 7.96 -51.93 -0.41 -0.48 16 34 H 0.08 0.14 7.96 -51.93 -0.41 -0.27 16 35 H 0.15 -0.44 7.39 -52.48 -0.39 -0.83 16 36 H 0.14 -0.12 8.06 -52.49 -0.42 -0.54 16 37 H 0.43 0.54 2.74 -40.82 -0.11 0.43 16 38 H 0.14 -0.10 7.45 -51.93 -0.39 -0.48 16 39 H 0.35 -0.94 8.23 -40.82 -0.34 -1.28 16 40 H 0.41 -1.74 7.71 -40.82 -0.31 -2.05 16 41 H 0.41 -1.09 8.93 -40.82 -0.36 -1.45 16 LS Contribution 360.63 15.07 5.43 5.43 Total: 0.00 -7.89 360.63 -5.44 -13.33 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: -4.79 Total: -7.42 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.25 Total: 4.42 kcal Atomic # 7 Polarization: -1.20 SS G_CDS: 0.63 Total: -0.58 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.10 Total: -2.77 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.12 Total: -1.43 kcal Atomic # 14 Polarization: -4.33 SS G_CDS: -6.68 Total: -11.00 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -7.89 -5.44 -13.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170532812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.718 kcal (2) G-P(sol) polarization free energy of solvation -7.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds