Wall clock time and date at job start Wed Apr 1 2020 04:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.47100 * 2 1 4 4 C 1.86301 * 109.47388 * 240.00125 * 2 1 3 5 5 C 1.86799 * 109.47080 * 120.00238 * 2 1 3 6 6 C 1.38342 * 120.44906 * 262.05946 * 5 2 1 7 7 C 1.38838 * 118.50681 * 179.75689 * 6 5 2 8 8 C 1.38066 * 119.32600 * 0.50954 * 7 6 5 9 9 C 1.50706 * 119.57510 * 179.75854 * 8 7 6 10 10 F 1.39899 * 109.46998 * 184.72755 * 9 8 7 11 11 F 1.39898 * 109.46980 * 64.72575 * 9 8 7 12 12 F 1.39901 * 109.46589 * 304.72463 * 9 8 7 13 13 N 1.31944 * 120.85584 * 359.47882 * 8 7 6 14 14 C 1.32429 * 121.61973 * 0.27668 * 13 8 7 15 15 N 1.39004 * 119.70013 * 180.02562 * 14 13 8 16 16 C 1.46498 * 120.00440 * 354.27671 * 15 14 13 17 17 C 1.50700 * 109.47011 * 155.00442 * 16 15 14 18 18 N 1.27939 * 120.00196 * 352.21599 * 17 16 15 19 19 Si 1.86796 * 119.99964 * 172.22267 * 17 16 15 20 20 H 1.48501 * 109.46994 * 5.61172 * 19 17 16 21 21 H 1.48499 * 109.47315 * 125.60868 * 19 17 16 22 22 H 1.48499 * 109.47140 * 245.60962 * 19 17 16 23 23 C 1.50694 * 109.46943 * 275.00077 * 16 15 14 24 24 N 1.34780 * 119.99873 * 152.59826 * 23 16 15 25 25 O 1.21282 * 120.00710 * 332.59481 * 23 16 15 26 26 H 1.08996 * 109.47456 * 299.99702 * 1 2 3 27 27 H 1.09005 * 109.46962 * 60.00186 * 1 2 3 28 28 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47051 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47081 * 300.00132 * 3 2 1 31 31 H 1.09009 * 109.46903 * 60.00016 * 3 2 1 32 32 H 1.09004 * 109.46914 * 310.92300 * 4 2 1 33 33 H 1.09003 * 109.47285 * 70.91862 * 4 2 1 34 34 H 1.08998 * 109.47743 * 190.92194 * 4 2 1 35 35 H 1.08004 * 120.74932 * 0.04675 * 6 5 2 36 36 H 1.07999 * 120.34029 * 180.26229 * 7 6 5 37 37 H 0.97003 * 119.99624 * 174.27845 * 15 14 13 38 38 H 1.08999 * 109.47103 * 35.00285 * 16 15 14 39 39 H 0.97000 * 120.00776 * 180.02562 * 18 17 16 40 40 H 0.96996 * 120.00111 * 355.51911 * 24 23 16 41 41 H 0.97005 * 120.00173 * 175.52532 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.8747 -0.1608 2.6407 7 6 3.3262 -0.8566 3.7540 8 6 3.3836 -2.2355 3.7122 9 6 3.8780 -2.9961 4.9156 10 9 3.9507 -4.3590 4.6082 11 9 2.9944 -2.8053 5.9833 12 9 5.1480 -2.5302 5.2722 13 7 3.0060 -2.8961 2.6343 14 6 2.5650 -2.2690 1.5546 15 7 2.1769 -3.0049 0.4410 16 6 2.3734 -4.4564 0.4173 17 6 1.3816 -5.0822 -0.5291 18 7 0.4509 -4.3705 -1.0430 19 14 1.5108 -6.8972 -0.9516 20 1 2.5780 -7.5220 -0.1295 21 1 0.2144 -7.5646 -0.6699 22 1 1.8426 -7.0479 -2.3912 23 6 3.7737 -4.7662 -0.0456 24 7 4.3784 -5.9036 0.3510 25 8 4.3565 -3.9922 -0.7751 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1206 2.2703 0.8901 32 1 1.9705 -1.8341 -1.6239 33 1 2.2885 -0.2644 -2.4004 34 1 3.5565 -1.0499 -1.4292 35 1 2.8238 0.9180 2.6471 36 1 3.6333 -0.3246 4.6423 37 1 1.7759 -2.5573 -0.3205 38 1 2.2243 -4.8597 1.4189 39 1 -0.1878 -4.7733 -1.6519 40 1 3.9387 -6.4909 0.9854 41 1 5.2535 -6.1348 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170532812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:32 Heat of formation + Delta-G solvation = -133.718991 kcal Electronic energy + Delta-G solvation = -30018.900151 eV Core-core repulsion = 25450.282659 eV Total energy + Delta-G solvation = -4568.617492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.22821 -48.76418 -48.69016 -41.68406 -40.65389 -37.85653 -35.73367 -34.82060 -33.69002 -31.92047 -29.85043 -29.27384 -28.34211 -28.16053 -27.07290 -23.94974 -23.69575 -23.05016 -21.01494 -19.99123 -19.61352 -19.54728 -18.90921 -18.13647 -17.76498 -17.49779 -17.17306 -16.69289 -16.08306 -15.80777 -15.57331 -15.50238 -15.36641 -15.14793 -14.97976 -14.86256 -14.85101 -14.64328 -14.49859 -14.13164 -13.98943 -13.88494 -13.80430 -13.67355 -13.29039 -13.19996 -13.11106 -13.05366 -12.91826 -12.33989 -12.09428 -11.84740 -11.69364 -11.33703 -10.98902 -10.89809 -10.65927 -10.58496 -10.51405 -10.22685 -8.94868 -0.32439 0.31564 0.50646 0.82180 1.29932 1.35104 1.37739 1.57644 1.64116 1.73860 1.84940 1.94610 2.07443 2.41257 2.48440 2.59582 2.64479 2.93552 3.24867 3.33002 3.69720 3.88676 3.99918 4.03087 4.16289 4.31921 4.61216 4.63480 4.72930 4.74795 4.84093 4.85636 4.89556 4.90477 4.98042 5.33370 5.48911 5.62048 5.68077 5.75382 5.84743 6.13063 6.30617 6.62708 6.89272 7.18124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.106 2.894 3 C -0.447 4.447 4 C -0.470 4.470 5 C -0.465 4.465 6 C -0.002 4.002 7 C -0.191 4.191 8 C 0.072 3.928 9 C 0.522 3.478 10 F -0.170 7.170 11 F -0.172 7.172 12 F -0.173 7.173 13 N -0.536 5.536 14 C 0.415 3.585 15 N -0.694 5.694 16 C 0.154 3.846 17 C -0.027 4.027 18 N -0.630 5.630 19 Si 0.970 3.030 20 H -0.198 1.198 21 H -0.235 1.235 22 H -0.253 1.253 23 C 0.508 3.492 24 N -0.834 5.834 25 O -0.565 6.565 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.180 0.820 36 H 0.160 0.840 37 H 0.426 0.574 38 H 0.145 0.855 39 H 0.359 0.641 40 H 0.419 0.581 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 -0.707 -1.142 3.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.294 2.706 3 C -0.557 4.557 4 C -0.575 4.575 5 C -0.510 4.510 6 C -0.027 4.027 7 C -0.214 4.214 8 C -0.066 4.066 9 C 0.466 3.534 10 F -0.152 7.152 11 F -0.154 7.154 12 F -0.154 7.154 13 N -0.255 5.255 14 C 0.179 3.821 15 N -0.336 5.336 16 C 0.043 3.957 17 C -0.274 4.274 18 N -0.245 5.245 19 Si 0.782 3.218 20 H -0.119 1.119 21 H -0.158 1.158 22 H -0.177 1.177 23 C 0.289 3.711 24 N -0.401 5.401 25 O -0.443 6.443 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.198 0.802 36 H 0.178 0.822 37 H 0.274 0.726 38 H 0.163 0.837 39 H 0.179 0.821 40 H 0.251 0.749 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.904 -1.158 -1.656 3.537 hybrid contribution 0.136 -0.288 -0.001 0.319 sum -2.767 -1.446 -1.656 3.534 Atomic orbital electron populations 1.26164 1.19951 1.04629 1.05442 0.77531 0.66425 0.66312 0.60346 1.26052 1.06627 1.16986 1.06002 1.26606 1.06136 1.07368 1.17401 1.28498 1.10456 0.97033 1.15019 1.21728 0.89229 1.02140 0.89593 1.21877 1.04409 0.92686 1.02449 1.20581 1.01304 0.92405 0.92353 1.18019 0.75310 0.77490 0.82550 1.93190 1.96033 1.32980 1.92959 1.93233 1.68723 1.94972 1.58426 1.93230 1.40976 1.88522 1.92696 1.66353 1.17933 1.41196 1.00012 1.18285 0.89196 0.88982 0.85685 1.44775 1.66295 1.05306 1.17191 1.20275 0.90395 0.83305 1.01724 1.30706 0.93843 1.08379 0.94507 1.67827 1.04308 1.43855 1.08530 0.85175 0.84229 0.70224 0.82198 1.11891 1.15822 1.17681 1.21030 0.88781 0.81581 0.79742 1.44007 1.23984 1.23507 1.48623 1.90745 1.66976 1.48487 1.38066 0.90335 0.89885 0.91781 0.90877 0.89952 0.89411 0.92149 0.89477 0.92131 0.80228 0.82226 0.72626 0.83745 0.82122 0.74880 0.75515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.28 8.65 113.37 0.98 2.26 16 2 Si 1.11 -3.63 11.40 68.60 0.78 -2.84 16 3 C -0.45 2.43 8.37 113.37 0.95 3.37 16 4 C -0.47 -0.81 8.07 113.37 0.92 0.10 16 5 C -0.47 -0.92 4.60 22.50 0.10 -0.81 16 6 C 0.00 0.00 9.40 22.44 0.21 0.21 16 7 C -0.19 -0.39 9.60 22.37 0.21 -0.17 16 8 C 0.07 0.48 6.26 42.50 0.27 0.75 16 9 C 0.52 3.40 3.31 71.24 0.24 3.64 16 10 F -0.17 -1.31 16.85 44.97 0.76 -0.55 16 11 F -0.17 -1.09 17.28 44.97 0.78 -0.31 16 12 F -0.17 -1.14 17.16 44.97 0.77 -0.37 16 13 N -0.54 -4.35 8.54 -181.33 -1.55 -5.90 16 14 C 0.42 2.75 7.32 133.04 0.97 3.72 16 15 N -0.69 -3.72 4.28 -331.73 -1.42 -5.14 16 16 C 0.15 0.40 2.58 43.50 0.11 0.51 16 17 C -0.03 0.02 5.38 88.68 0.48 0.50 16 18 N -0.63 0.00 12.52 24.11 0.30 0.30 16 19 Si 0.97 -5.50 27.86 68.60 1.91 -3.59 16 20 H -0.20 1.95 5.70 99.48 0.57 2.52 16 21 H -0.24 1.27 7.11 99.48 0.71 1.97 16 22 H -0.25 0.59 7.11 99.48 0.71 1.30 16 23 C 0.51 2.37 6.38 87.65 0.56 2.93 16 24 N -0.83 2.62 7.67 -173.53 -1.33 1.29 16 25 O -0.57 -7.46 17.49 -3.03 -0.05 -7.52 16 26 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.08 -0.35 7.96 -2.38 -0.02 -0.37 16 28 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 29 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 31 H 0.09 -0.70 7.73 -2.38 -0.02 -0.72 16 32 H 0.06 0.22 5.74 -2.39 -0.01 0.21 16 33 H 0.09 -0.07 7.96 -2.39 -0.02 -0.09 16 34 H 0.06 0.35 7.96 -2.39 -0.02 0.33 16 35 H 0.18 -1.52 7.39 -2.91 -0.02 -1.54 16 36 H 0.16 -0.40 8.06 -2.91 -0.02 -0.43 16 37 H 0.43 1.83 2.74 -92.71 -0.25 1.58 16 38 H 0.15 -0.04 7.45 -2.39 -0.02 -0.05 16 39 H 0.36 -1.53 8.23 -92.71 -0.76 -2.30 16 40 H 0.42 -3.72 7.71 -92.71 -0.71 -4.43 16 41 H 0.41 -2.07 8.93 -92.70 -0.83 -2.90 16 Total: 0.00 -19.90 360.63 6.14 -13.76 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: -0.81 Total: -6.14 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.00 Total: 17.01 kcal Atomic # 7 Polarization: -5.45 SS G_CDS: -4.00 Total: -9.45 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.05 Total: -7.52 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 2.31 Total: -1.23 kcal Atomic # 14 Polarization: -9.12 SS G_CDS: 2.69 Total: -6.43 kcal Total: -19.90 6.14 -13.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170532812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.959 kcal (2) G-P(sol) polarization free energy of solvation -19.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds