Wall clock time and date at job start Wed Apr 1 2020 04:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35793 * 116.99782 * 2 1 4 4 C 1.39139 * 119.99852 * 180.02562 * 3 2 1 5 5 C 1.39907 * 117.81604 * 180.02562 * 4 3 2 6 6 C 1.47817 * 121.15886 * 179.97438 * 5 4 3 7 7 O 1.21559 * 119.99822 * 179.97438 * 6 5 4 8 8 N 1.34770 * 120.00211 * 359.97438 * 6 5 4 9 9 C 1.39922 * 120.00617 * 175.46310 * 8 6 5 10 10 C 1.39396 * 119.90879 * 325.81269 * 9 8 6 11 11 C 1.38355 * 120.46581 * 180.02562 * 10 9 8 12 12 C 1.38013 * 120.29170 * 359.97438 * 11 10 9 13 13 F 1.35097 * 120.08873 * 179.97438 * 12 11 10 14 14 C 1.41008 * 119.81555 * 359.97438 * 12 11 10 15 15 C 1.41296 * 120.22550 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00391 * 334.93588 * 15 14 12 17 17 C 1.39926 * 119.99652 * 155.20825 * 15 14 12 18 18 N 1.30850 * 119.99679 * 160.49891 * 17 15 14 19 19 Si 1.86797 * 120.00278 * 340.50163 * 17 15 14 20 20 H 1.48494 * 109.47431 * 95.25239 * 19 17 15 21 21 H 1.48505 * 109.47075 * 215.25534 * 19 17 15 22 22 H 1.48509 * 109.46993 * 335.24984 * 19 17 15 23 23 C 1.38161 * 119.91751 * 146.08836 * 9 8 6 24 24 C 1.40565 * 117.68264 * 0.24781 * 5 4 3 25 25 O 1.35533 * 120.19253 * 179.75390 * 24 5 4 26 26 C 1.42906 * 117.00109 * 180.02562 * 25 24 5 27 27 N 1.32287 * 119.61529 * 359.48714 * 24 5 4 28 28 N 1.28264 * 122.32122 * 0.53813 * 27 24 5 29 29 H 1.08997 * 109.46997 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47075 * 299.99648 * 1 2 3 31 31 H 1.08999 * 109.47360 * 60.00042 * 1 2 3 32 32 H 1.08002 * 121.08776 * 0.04110 * 4 3 2 33 33 H 0.97007 * 120.00052 * 355.46021 * 8 6 5 34 34 H 1.07998 * 119.76539 * 0.02562 * 10 9 8 35 35 H 1.07998 * 119.85458 * 179.97438 * 11 10 9 36 36 H 0.97006 * 120.00324 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.14748 * 359.97438 * 23 9 8 38 38 H 1.08997 * 109.47014 * 180.02562 * 26 25 24 39 39 H 1.09001 * 109.46724 * 299.99889 * 26 25 24 40 40 H 1.08995 * 109.47087 * 59.99751 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4350 1.2828 -0.0005 5 6 4.0222 2.5527 0.0000 6 6 5.4913 2.7160 0.0001 7 8 5.9790 3.8294 0.0001 8 7 6.2900 1.6305 0.0001 9 6 7.6776 1.7827 -0.0957 10 6 8.2120 2.8190 -0.8596 11 6 9.5823 2.9799 -0.9628 12 6 10.4360 2.1149 -0.3088 13 9 11.7734 2.2755 -0.4127 14 6 9.9084 1.0631 0.4682 15 6 10.7745 0.1721 1.1410 16 1 11.7784 0.0152 0.7751 17 6 10.3294 -0.5112 2.2780 18 7 10.9512 -1.5910 2.6775 19 14 8.8477 0.1179 3.2257 20 1 7.6272 -0.5905 2.7635 21 1 9.0455 -0.1315 4.6762 22 1 8.6927 1.5761 2.9908 23 6 8.5145 0.9022 0.5624 24 6 3.1664 3.6678 0.0065 25 8 3.6809 4.9217 0.0124 26 6 2.7491 6.0052 0.0193 27 7 1.8561 3.4863 0.0015 28 7 1.3255 2.3186 0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0403 0.3883 -0.0016 33 1 5.9029 0.7435 0.0666 34 1 7.5518 3.5011 -1.3746 35 1 9.9857 3.7860 -1.5576 36 1 10.6430 -2.0646 3.4660 37 1 8.1000 0.0970 1.1509 38 1 3.2914 6.9507 0.0231 39 1 2.1215 5.9503 -0.8701 40 1 2.1238 5.9410 0.9098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189072615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:29 Heat of formation + Delta-G solvation = -80.842027 kcal Electronic energy + Delta-G solvation = -29671.306549 eV Core-core repulsion = 25173.827702 eV Total energy + Delta-G solvation = -4497.478847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.28292 -42.83231 -41.32365 -40.25033 -39.08247 -38.83168 -36.19177 -35.47930 -34.55705 -32.50191 -32.27430 -30.22351 -28.72684 -28.44175 -27.21841 -26.26857 -25.06405 -23.90073 -23.28157 -21.66274 -20.25657 -19.71325 -19.63757 -19.24751 -18.44968 -17.94036 -17.82721 -17.55341 -16.94070 -16.82037 -16.57253 -16.09900 -16.05903 -15.88767 -15.80494 -15.36660 -15.20436 -14.93938 -14.87624 -14.61433 -14.08543 -13.84940 -13.62814 -13.31958 -13.25441 -13.01337 -12.82728 -12.80560 -12.73369 -12.52269 -12.23616 -12.14517 -11.70116 -11.56272 -11.35470 -11.05788 -11.04683 -10.78251 -9.83239 -9.73545 -9.01450 -8.92349 -6.60716 -1.09478 -0.27100 0.43198 0.63040 1.18834 1.34778 1.46526 1.52869 1.56427 1.74627 1.86843 2.05573 2.26719 2.50180 2.73502 2.99187 3.24130 3.33804 3.50126 3.78794 3.86557 4.05281 4.13320 4.31366 4.37915 4.39855 4.43591 4.45499 4.55152 4.58379 4.72158 4.73021 4.78154 4.80570 5.12429 5.42768 5.54671 5.57232 5.66505 5.84060 5.92255 5.99309 6.16678 6.34864 6.53098 6.63654 6.92447 7.23027 8.06458 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.003302 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.892758 B = 8478.410057 C = 9938.888260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.299 6.299 3 C 0.232 3.768 4 C -0.043 4.043 5 C -0.123 4.123 6 C 0.563 3.437 7 O -0.513 6.513 8 N -0.652 5.652 9 C 0.180 3.820 10 C -0.206 4.206 11 C -0.089 4.089 12 C -0.049 4.049 13 F -0.166 7.166 14 C 0.066 3.934 15 C -0.470 4.470 16 H 0.058 0.942 17 C 0.054 3.946 18 N -0.829 5.829 19 Si 0.960 3.040 20 H -0.234 1.234 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.248 4.248 24 C 0.276 3.724 25 O -0.288 6.288 26 C 0.025 3.975 27 N -0.272 5.272 28 N -0.255 5.255 29 H 0.131 0.869 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.200 0.800 33 H 0.422 0.578 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.300 0.700 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.069 0.931 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.700 3.570 -3.404 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.203 6.203 3 C 0.045 3.955 4 C -0.074 4.074 5 C -0.138 4.138 6 C 0.350 3.650 7 O -0.388 6.388 8 N -0.299 5.299 9 C 0.087 3.913 10 C -0.226 4.226 11 C -0.109 4.109 12 C -0.069 4.069 13 F -0.145 7.145 14 C 0.062 3.938 15 C -0.498 4.498 16 H 0.076 0.924 17 C -0.163 4.163 18 N -0.453 5.453 19 Si 0.782 3.218 20 H -0.158 1.158 21 H -0.203 1.203 22 H -0.184 1.184 23 C -0.270 4.270 24 C 0.088 3.912 25 O -0.190 6.190 26 C -0.070 4.070 27 N -0.131 5.131 28 N -0.113 5.113 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.217 0.783 33 H 0.262 0.738 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.355 4.664 -3.263 25.011 hybrid contribution 1.193 -0.797 0.460 1.507 sum -23.162 3.867 -2.803 23.649 Atomic orbital electron populations 1.23304 0.74784 1.05708 1.02899 1.86303 1.24974 1.21292 1.87708 1.21161 0.90437 0.87433 0.96503 1.22013 0.93136 0.98084 0.94127 1.20127 0.93547 0.92354 1.07722 1.17854 0.85486 0.84582 0.77103 1.90868 1.75496 1.25159 1.47243 1.43209 1.04386 1.10211 1.72068 1.17331 0.81560 0.96548 0.95904 1.20397 0.93762 1.02242 1.06242 1.20752 0.93008 0.98239 0.98877 1.18059 0.76598 1.01378 1.10892 1.91274 1.32055 1.95546 1.95654 1.17575 0.92709 0.90786 0.92698 1.19358 1.00218 1.19729 1.10479 0.92416 1.26832 1.00038 0.92186 0.97255 1.69705 1.39784 1.12931 1.22891 0.85606 0.78485 0.81008 0.76695 1.15817 1.20305 1.18442 1.20565 0.91839 1.05224 1.09344 1.21447 0.89877 0.87360 0.92501 1.86532 1.35408 1.11045 1.85983 1.23330 0.93441 0.87034 1.03149 1.72945 1.08215 1.14774 1.17125 1.72518 1.31658 0.93851 1.13296 0.85076 0.91870 0.91759 0.78263 0.73826 0.85273 0.84418 0.88889 0.86022 0.86008 0.91206 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.40 113.37 1.18 1.46 16 2 O -0.30 -4.73 10.49 -91.23 -0.96 -5.69 16 3 C 0.23 4.47 7.57 84.85 0.64 5.11 16 4 C -0.04 -0.79 9.63 22.89 0.22 -0.57 16 5 C -0.12 -3.02 5.93 -19.77 -0.12 -3.13 16 6 C 0.56 17.25 7.53 86.78 0.65 17.90 16 7 O -0.51 -19.46 13.00 16.37 0.21 -19.25 16 8 N -0.65 -19.36 5.29 -306.23 -1.62 -20.98 16 9 C 0.18 7.00 6.25 38.11 0.24 7.24 16 10 C -0.21 -8.22 8.66 22.58 0.20 -8.03 16 11 C -0.09 -3.75 10.00 22.24 0.22 -3.52 16 12 C -0.05 -2.39 7.31 22.90 0.17 -2.22 16 13 F -0.17 -8.38 16.71 44.97 0.75 -7.63 16 14 C 0.07 3.36 5.22 -21.26 -0.11 3.24 16 15 C -0.47 -26.01 9.30 23.43 0.22 -25.79 16 16 H 0.06 3.53 7.89 -2.91 -0.02 3.51 16 17 C 0.05 2.78 5.41 85.25 0.46 3.24 16 18 N -0.83 -43.14 13.93 21.82 0.30 -42.84 16 19 Si 0.96 39.75 24.43 68.60 1.68 41.43 16 20 H -0.23 -8.27 6.64 99.48 0.66 -7.61 16 21 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.26 -11.58 6.79 99.48 0.68 -10.90 16 23 C -0.25 -10.83 7.08 22.84 0.16 -10.67 16 24 C 0.28 7.19 7.59 85.19 0.65 7.84 16 25 O -0.29 -7.78 8.71 -68.10 -0.59 -8.37 16 26 C 0.02 0.44 10.40 113.37 1.18 1.62 16 27 N -0.27 -6.62 10.39 -169.61 -1.76 -8.38 16 28 N -0.25 -5.66 10.36 -170.34 -1.76 -7.43 16 29 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 32 H 0.20 2.23 6.61 -2.91 -0.02 2.21 16 33 H 0.42 9.05 7.01 -92.70 -0.65 8.40 16 34 H 0.13 4.94 6.43 -2.91 -0.02 4.92 16 35 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 36 H 0.30 13.78 8.30 -92.70 -0.77 13.01 16 37 H 0.12 4.97 4.18 -2.91 -0.01 4.95 16 38 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 40 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 Total: -1.00 -69.04 349.34 2.62 -66.43 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.41 Total: 18.99 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 5.96 Total: -6.28 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -4.84 Total: -79.62 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.34 Total: -33.31 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 0.75 Total: -7.63 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.68 Total: 41.43 kcal Total: -69.04 2.62 -66.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189072615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.417 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds