Wall clock time and date at job start Wed Apr 1 2020 04:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35850 * 119.25012 * 2 1 4 4 C 1.38130 * 119.31480 * 180.23290 * 3 2 1 5 5 C 1.47047 * 120.95528 * 179.75126 * 4 3 2 6 6 O 1.21662 * 120.00065 * 5.88207 * 5 4 3 7 7 N 1.34774 * 119.99968 * 185.88271 * 5 4 3 8 8 C 1.39951 * 120.00162 * 185.31724 * 7 5 4 9 9 C 1.39383 * 119.91415 * 213.53912 * 8 7 5 10 10 C 1.38363 * 120.46499 * 180.25105 * 9 8 7 11 11 C 1.38002 * 120.29171 * 359.49038 * 10 9 8 12 12 F 1.35106 * 120.09668 * 180.25301 * 11 10 9 13 13 C 1.41013 * 119.81565 * 0.52851 * 11 10 9 14 14 C 1.41296 * 120.22928 * 179.70056 * 13 11 10 15 15 H 1.07997 * 119.99771 * 27.90419 * 14 13 11 16 16 C 1.39922 * 119.99898 * 207.90224 * 14 13 11 17 17 N 1.30851 * 119.99921 * 10.90959 * 16 14 13 18 18 Si 1.86800 * 119.99757 * 190.90030 * 16 14 13 19 19 H 1.48499 * 109.46933 * 60.00562 * 18 16 14 20 20 H 1.48507 * 109.46872 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47350 * 300.00427 * 18 16 14 22 22 C 1.38153 * 119.90766 * 33.56042 * 8 7 5 23 23 C 1.47178 * 118.08938 * 359.48335 * 4 3 2 24 24 O 1.21678 * 120.74050 * 180.24831 * 23 4 3 25 25 N 1.34980 * 118.52440 * 0.27177 * 23 4 3 26 26 C 1.46504 * 119.77707 * 180.02562 * 25 23 4 27 27 C 1.34233 * 119.24753 * 179.70797 * 2 1 3 28 28 O 1.21551 * 118.93579 * 0.03737 * 27 2 1 29 29 H 1.08999 * 109.47042 * 270.29910 * 1 2 3 30 30 H 1.08997 * 109.47047 * 30.29252 * 1 2 3 31 31 H 1.08994 * 109.47229 * 150.29948 * 1 2 3 32 32 H 1.07999 * 120.33969 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00296 * 5.31593 * 7 5 4 34 34 H 1.07991 * 119.76570 * 359.97438 * 9 8 7 35 35 H 1.08003 * 119.84839 * 179.74561 * 10 9 8 36 36 H 0.96999 * 119.99697 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.15437 * 359.97438 * 22 8 7 38 38 H 1.08993 * 109.47245 * 0.02562 * 26 25 23 39 39 H 1.09003 * 109.47060 * 120.00215 * 26 25 23 40 40 H 1.09002 * 109.47082 * 239.99625 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1288 1.1853 0.0000 4 6 3.5101 1.1868 -0.0049 5 6 4.2650 2.4487 -0.0105 6 8 3.6783 3.5091 0.0970 7 7 5.6069 2.4307 -0.1349 8 6 6.3356 3.6208 -0.0288 9 6 7.4929 3.7970 -0.7855 10 6 8.2249 4.9669 -0.6856 11 6 7.8104 5.9775 0.1578 12 9 8.5254 7.1203 0.2483 13 6 6.6417 5.8119 0.9292 14 6 6.2129 6.8384 1.8003 15 1 6.4576 7.8677 1.5836 16 6 5.4711 6.5213 2.9435 17 7 5.3552 5.2745 3.3233 18 14 4.6464 7.8780 3.9278 19 1 3.6799 8.6002 3.0619 20 1 3.9281 7.2842 5.0840 21 1 5.6759 8.8282 4.4201 22 6 5.9062 4.6176 0.8260 23 6 4.2046 -0.1108 0.0018 24 8 5.4201 -0.1656 0.0024 25 7 3.4631 -1.2387 0.0067 26 6 4.1260 -2.5451 0.0140 27 6 2.1209 -1.1712 0.0060 28 8 1.4800 -2.2040 0.0105 29 1 -0.3633 0.0054 1.0276 30 1 -0.3633 0.8873 -0.5184 31 1 -0.3633 -0.8926 -0.5091 32 1 1.5821 2.1167 0.0004 33 1 6.0677 1.5928 -0.2979 34 1 7.8229 3.0132 -1.4509 35 1 9.1223 5.0913 -1.2735 36 1 4.8407 5.0547 4.1156 37 1 5.0095 4.4806 1.4120 38 1 5.2068 -2.4042 0.0148 39 1 3.8312 -3.0972 0.9064 40 1 3.8330 -3.1061 -0.8735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195541685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:41 Heat of formation + Delta-G solvation = -81.281580 kcal Electronic energy + Delta-G solvation = -30134.584152 eV Core-core repulsion = 25637.086245 eV Total energy + Delta-G solvation = -4497.497908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.13190 -42.63011 -39.88624 -39.05802 -37.70218 -36.85473 -35.68634 -34.20977 -33.10845 -32.08120 -29.71743 -28.80061 -28.03479 -27.21837 -25.38414 -24.59438 -23.84242 -21.91916 -21.13987 -20.08732 -19.36260 -18.33509 -17.75026 -17.56835 -17.32357 -16.10577 -15.98463 -15.96137 -15.74886 -15.27938 -15.20163 -14.96374 -14.64104 -14.20670 -14.05097 -13.90506 -13.79810 -13.64336 -13.25441 -13.03011 -12.84942 -12.69563 -12.43716 -11.86557 -11.75547 -11.69249 -11.57316 -11.31067 -11.12027 -10.95662 -10.60406 -10.42064 -10.28006 -10.16121 -9.69555 -9.48503 -9.30472 -8.88648 -8.81517 -7.48041 -6.82894 -6.65882 -4.38209 0.45452 1.44654 1.48520 2.49281 2.51341 2.80218 2.92050 3.08950 3.13274 3.19055 3.60364 3.71207 3.93269 3.96363 4.39361 4.53122 4.62385 4.77565 4.79577 4.95885 5.02870 5.11267 5.14669 5.26910 5.40176 5.54274 5.63849 5.86512 5.96436 6.15311 6.46937 6.74840 6.84082 6.94974 7.00869 7.07678 7.21711 7.46320 7.50846 7.60700 7.74293 8.05176 8.17573 8.33535 8.50661 8.80996 8.84856 8.90279 10.20927 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003295 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.000636 B = 8496.851897 C = 9958.573868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.528 5.528 3 C 0.238 3.762 4 C -0.304 4.304 5 C 0.580 3.420 6 O -0.522 6.522 7 N -0.650 5.650 8 C 0.136 3.864 9 C -0.235 4.235 10 C -0.110 4.110 11 C -0.038 4.038 12 F -0.164 7.164 13 C 0.094 3.906 14 C -0.449 4.449 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.792 5.792 18 Si 0.916 3.084 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.133 4.133 23 C 0.560 3.440 24 O -0.497 6.497 25 N -0.553 5.553 26 C 0.079 3.921 27 C 0.693 3.307 28 O -0.535 6.535 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.198 0.802 33 H 0.412 0.588 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.281 0.719 37 H 0.150 0.850 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.902 -13.954 -4.879 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.245 5.245 3 C 0.110 3.890 4 C -0.317 4.317 5 C 0.366 3.634 6 O -0.400 6.400 7 N -0.299 5.299 8 C 0.044 3.956 9 C -0.256 4.256 10 C -0.130 4.130 11 C -0.058 4.058 12 F -0.143 7.143 13 C 0.090 3.910 14 C -0.478 4.478 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.417 5.417 18 Si 0.740 3.260 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.154 4.154 23 C 0.355 3.645 24 O -0.371 6.371 25 N -0.296 5.296 26 C -0.062 4.062 27 C 0.396 3.604 28 O -0.408 6.408 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.215 0.785 33 H 0.254 0.746 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.167 0.833 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.156 -14.143 -4.585 18.587 hybrid contribution 0.035 0.209 0.481 0.525 sum -11.121 -13.933 -4.105 18.293 Atomic orbital electron populations 1.22266 0.73847 1.05832 1.04778 1.44480 1.10151 1.04255 1.65653 1.22940 0.92544 0.89986 0.83538 1.21716 0.92809 0.93738 1.23416 1.16919 0.82449 0.86395 0.77661 1.90872 1.69144 1.30254 1.49687 1.43612 1.05879 1.10954 1.69440 1.17630 0.93200 0.87045 0.97747 1.19879 0.99960 0.99053 1.06749 1.20231 0.99633 0.93527 0.99570 1.17906 0.94933 0.84600 1.08405 1.91264 1.77641 1.49313 1.96107 1.17501 0.88701 0.93724 0.91032 1.19455 1.28662 0.94836 1.04896 0.89964 1.25889 0.94392 0.96484 0.97554 1.69779 1.31246 1.18870 1.21777 0.86238 0.79867 0.81100 0.78776 1.18697 1.20304 1.18930 1.21351 1.01937 0.93326 0.98772 1.18499 0.87414 0.83332 0.75278 1.90684 1.12498 1.85774 1.48113 1.46208 1.05700 1.10729 1.66976 1.21977 0.99687 0.80603 1.03924 1.15717 0.81854 0.84071 0.78714 1.91010 1.64975 1.31175 1.53671 0.89946 0.88495 0.88258 0.78496 0.74612 0.88200 0.87749 0.90786 0.83252 0.87626 0.90162 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 10.31 59.85 0.62 0.96 16 2 N -0.53 -4.57 2.97 -128.51 -0.38 -4.95 16 3 C 0.24 2.38 9.96 -15.81 -0.16 2.22 16 4 C -0.30 -4.30 6.05 -102.74 -0.62 -4.92 16 5 C 0.58 11.09 7.48 -12.69 -0.09 11.00 16 6 O -0.52 -11.47 14.11 5.22 0.07 -11.39 16 7 N -0.65 -13.31 5.22 -10.97 -0.06 -13.37 16 8 C 0.14 3.27 6.27 -83.76 -0.53 2.74 16 9 C -0.24 -5.29 9.96 -39.11 -0.39 -5.68 16 10 C -0.11 -2.56 10.00 -39.62 -0.40 -2.96 16 11 C -0.04 -1.00 7.31 -38.62 -0.28 -1.28 16 12 F -0.16 -4.26 16.74 2.25 0.04 -4.22 16 13 C 0.09 2.64 5.57 -106.78 -0.59 2.04 16 14 C -0.45 -12.48 8.77 -37.79 -0.33 -12.81 16 15 H 0.08 2.23 7.75 -52.49 -0.41 1.83 16 16 C 0.07 1.93 5.26 -17.34 -0.09 1.84 16 17 N -0.79 -20.94 10.79 55.55 0.60 -20.34 16 18 Si 0.92 19.29 29.57 -169.99 -5.03 14.26 16 19 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 22 C -0.13 -3.57 7.26 -38.71 -0.28 -3.85 16 23 C 0.56 7.74 7.63 -12.54 -0.10 7.65 16 24 O -0.50 -7.86 13.41 5.21 0.07 -7.79 16 25 N -0.55 -6.33 2.96 -129.64 -0.38 -6.71 16 26 C 0.08 0.70 9.96 59.85 0.60 1.30 16 27 C 0.69 7.59 8.09 -87.75 -0.71 6.88 16 28 O -0.54 -6.56 15.61 5.32 0.08 -6.48 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.20 8.01 -51.93 -0.42 -0.21 16 31 H 0.10 0.49 7.31 -51.93 -0.38 0.11 16 32 H 0.20 1.55 7.69 -52.49 -0.40 1.14 16 33 H 0.41 7.74 5.72 -40.82 -0.23 7.50 16 34 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 36 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 37 H 0.15 4.22 4.51 -52.49 -0.24 3.98 16 38 H 0.11 0.93 6.92 -51.93 -0.36 0.57 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -34.34 349.31 -6.76 -41.11 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -3.68 Total: 9.49 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -3.36 Total: 5.13 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.22 Total: -45.37 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.23 Total: -25.66 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.04 Total: -4.22 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.34 -6.76 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195541685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.175 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds