Wall clock time and date at job start Wed Apr 1 2020 04:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34706 * 116.99723 * 2 1 4 4 O 1.21469 * 120.00306 * 359.97438 * 3 2 1 5 5 C 1.47742 * 119.99773 * 180.02562 * 3 2 1 6 6 C 1.39667 * 120.11700 * 359.97438 * 5 3 2 7 7 C 1.37969 * 119.99431 * 180.02562 * 6 5 3 8 8 C 1.38262 * 120.23049 * 0.02562 * 7 6 5 9 9 C 1.38967 * 120.22963 * 0.02562 * 8 7 6 10 10 N 1.39927 * 119.99784 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00083 * 134.73567 * 10 9 8 12 12 S 1.71205 * 120.00000 * 4.14916 * 11 10 9 13 13 N 1.34776 * 119.99836 * 184.15186 * 11 10 9 14 14 C 1.46500 * 119.99858 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47263 * 89.99812 * 14 13 11 16 16 H 1.08001 * 119.99516 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00424 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00375 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99719 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47375 * 90.00420 * 19 17 15 21 21 H 1.48496 * 109.47117 * 210.00373 * 19 17 15 22 22 H 1.48505 * 109.47231 * 330.00608 * 19 17 15 23 23 C 1.46500 * 120.00094 * 359.97438 * 13 11 10 24 24 C 1.52999 * 109.46630 * 90.00576 * 23 13 11 25 25 C 1.47203 * 109.46952 * 180.02562 * 24 23 13 26 26 N 8.89861 * 166.30986 * 198.67987 * 5 1 2 27 27 C 1.38631 * 120.00373 * 359.97072 * 9 8 7 28 28 H 1.09008 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47187 * 299.99985 * 1 2 3 30 30 H 1.09001 * 109.47685 * 60.00217 * 1 2 3 31 31 H 1.07995 * 120.00432 * 0.02607 * 6 5 3 32 32 H 1.08002 * 119.88376 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.88628 * 180.02562 * 8 7 6 34 34 H 0.96996 * 119.99796 * 314.74134 * 10 9 8 35 35 H 1.09002 * 109.47460 * 209.99382 * 14 13 11 36 36 H 1.08997 * 109.47281 * 330.00089 * 14 13 11 37 37 H 0.96992 * 120.00396 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.46805 * 210.00323 * 23 13 11 39 39 H 1.08992 * 109.46913 * 330.00651 * 23 13 11 40 40 H 1.08999 * 109.47320 * 299.99432 * 24 23 13 41 41 H 1.08992 * 109.47410 * 60.00380 * 24 23 13 42 42 H 1.08009 * 120.11489 * 179.74901 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3020 0.1078 -0.0006 7 6 5.6796 0.1830 -0.0006 8 6 6.3096 1.4137 0.0000 9 6 5.5596 2.5836 0.0010 10 7 6.2022 3.8266 0.0021 11 6 5.7820 4.8032 -0.8261 12 16 4.3969 4.5603 -1.8026 13 7 6.4521 5.9711 -0.8856 14 6 5.9956 7.0325 -1.7863 15 6 5.0175 7.9205 -1.0611 16 1 4.7613 7.7146 -0.0324 17 6 4.4489 8.9953 -1.7113 18 7 3.5950 9.7699 -1.0787 19 14 4.8916 9.3510 -3.4908 20 1 3.9536 8.6297 -4.3880 21 1 4.7935 10.8111 -3.7430 22 1 6.2798 8.8950 -3.7563 23 6 7.6371 6.1791 -0.0496 24 6 8.8835 5.7195 -0.8085 25 6 10.0742 5.9279 0.0316 26 7 10.9935 6.0903 0.6718 27 6 4.1748 2.5193 0.0010 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8137 -0.8555 -0.0006 32 1 6.2679 -0.7227 -0.0010 33 1 7.3883 1.4661 -0.0005 34 1 6.9502 3.9853 0.5989 35 1 6.8505 7.6245 -2.1131 36 1 5.5084 6.5880 -2.6541 37 1 3.1954 10.5262 -1.5359 38 1 7.7291 7.2377 0.1931 39 1 7.5385 5.6026 0.8701 40 1 8.7915 4.6608 -1.0512 41 1 8.9821 6.2959 -1.7283 42 1 3.5901 3.4275 0.0059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195835556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:31 Heat of formation + Delta-G solvation = 11.459526 kcal Electronic energy + Delta-G solvation = -27184.364739 eV Core-core repulsion = 23257.101564 eV Total energy + Delta-G solvation = -3927.263176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64691 -39.93989 -38.61267 -36.98110 -36.32797 -35.51980 -32.92482 -31.93627 -31.43191 -30.08231 -28.07959 -27.63011 -25.67062 -24.22251 -23.58850 -22.00739 -21.31941 -20.58911 -18.72251 -18.29022 -17.69116 -17.07756 -16.95299 -16.56081 -16.29585 -16.15885 -15.48674 -15.18177 -15.12137 -14.79653 -14.19826 -14.05551 -13.79875 -13.61694 -13.54559 -13.21543 -12.93340 -12.85085 -12.57538 -12.43667 -12.21919 -12.06319 -11.97656 -11.85517 -11.51252 -11.36276 -11.10547 -10.79570 -10.67728 -10.55233 -10.45788 -10.36268 -9.73783 -9.29237 -9.12371 -8.65495 -8.29103 -7.19378 -6.51511 -6.15386 -4.16516 0.65088 1.19855 1.81735 2.23168 2.51148 2.53569 2.59429 2.65919 2.98821 3.23895 3.26476 3.33152 3.37584 3.75900 3.87099 4.33582 4.48893 4.59419 4.65779 4.75994 4.95614 5.00563 5.04293 5.09796 5.13525 5.16063 5.28370 5.30861 5.38257 5.47356 5.57355 5.74368 5.98859 6.13436 6.22750 6.25548 6.41835 6.44673 6.58744 6.78042 6.94408 7.15954 7.26926 7.40177 7.51700 7.84139 8.33822 8.83856 9.41223 10.97464 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.008866 B = 0.003802 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.367053 B = 7363.500838 C = 9975.943935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.506 3.494 4 O -0.489 6.489 5 C -0.125 4.125 6 C -0.064 4.064 7 C -0.134 4.134 8 C -0.093 4.093 9 C 0.127 3.873 10 N -0.651 5.651 11 C 0.550 3.450 12 S -0.599 6.599 13 N -0.530 5.530 14 C 0.207 3.793 15 C -0.528 4.528 16 H 0.076 0.924 17 C 0.082 3.918 18 N -0.890 5.890 19 Si 0.873 3.127 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.097 3.903 24 C -0.048 4.048 25 C 0.212 3.788 26 N -0.429 5.429 27 C -0.002 4.002 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.402 0.598 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.267 0.733 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -20.154 2.901 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.350 3.650 4 O -0.376 6.376 5 C -0.129 4.129 6 C -0.083 4.083 7 C -0.154 4.154 8 C -0.115 4.115 9 C 0.033 3.967 10 N -0.281 5.281 11 C 0.194 3.806 12 S -0.460 6.460 13 N -0.234 5.234 14 C 0.088 3.912 15 C -0.567 4.567 16 H 0.094 0.906 17 C -0.121 4.121 18 N -0.527 5.527 19 Si 0.700 3.300 20 H -0.194 1.194 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.032 4.032 24 C -0.090 4.090 25 C -0.106 4.106 26 N -0.106 5.106 27 C -0.027 4.027 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.242 0.758 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.403 -19.348 3.092 20.613 hybrid contribution 0.622 0.622 -0.419 0.974 sum 7.025 -18.726 2.673 20.178 Atomic orbital electron populations 1.23246 0.76220 1.03402 1.02810 1.86504 1.23359 1.32951 1.84893 1.21159 0.89138 0.81418 0.73302 1.90915 1.66507 1.35769 1.44445 1.18781 0.89026 0.94189 1.10872 1.21409 0.93849 0.97774 0.95248 1.20776 0.94186 0.97043 1.03349 1.21148 0.99829 0.91260 0.99248 1.17121 0.91234 0.83358 1.05025 1.42229 1.35528 1.10869 1.39472 1.22427 0.90761 0.81700 0.85718 1.93397 1.16838 1.86433 1.49379 1.47422 1.23802 1.12599 1.39563 1.20418 0.96472 0.83853 0.90497 1.20966 1.25288 1.09991 1.00434 0.90611 1.24716 0.94180 0.95550 0.97700 1.69861 1.28663 1.16963 1.37219 0.86912 0.79515 0.77694 0.85917 1.19371 1.21162 1.19156 1.21695 0.83133 1.05492 0.92857 1.19767 0.86398 1.05114 0.97729 1.28667 0.94432 0.93483 0.94059 1.81087 1.11335 1.08526 1.09647 1.21815 0.93576 0.98733 0.88527 0.88216 0.91882 0.91754 0.84645 0.84985 0.85419 0.75791 0.94226 0.90973 0.92340 0.86637 0.90286 0.87330 0.85955 0.81469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.36 9.81 -40.51 -0.40 -4.76 16 3 C 0.51 7.67 7.90 34.61 0.27 7.94 16 4 O -0.49 -9.24 16.13 -19.24 -0.31 -9.55 16 5 C -0.12 -1.73 5.87 -105.01 -0.62 -2.34 16 6 C -0.06 -0.65 9.61 -39.15 -0.38 -1.03 16 7 C -0.13 -1.15 10.02 -39.67 -0.40 -1.54 16 8 C -0.09 -0.87 9.96 -39.30 -0.39 -1.26 16 9 C 0.13 1.61 5.93 -83.75 -0.50 1.11 16 10 N -0.65 -8.02 5.19 -11.43 -0.06 -8.08 16 11 C 0.55 9.19 7.56 -86.92 -0.66 8.54 16 12 S -0.60 -13.19 24.23 -107.50 -2.60 -15.79 16 13 N -0.53 -8.45 2.46 -177.09 -0.43 -8.88 16 14 C 0.21 4.24 3.99 -5.19 -0.02 4.22 16 15 C -0.53 -13.64 9.94 -34.44 -0.34 -13.98 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 19 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -5.61 6.54 56.52 0.37 -5.24 16 23 C 0.10 1.04 5.16 -4.04 -0.02 1.02 16 24 C -0.05 -0.38 6.03 -29.52 -0.18 -0.56 16 25 C 0.21 2.06 15.42 -20.89 -0.32 1.74 16 26 N -0.43 -5.42 18.51 42.00 0.78 -4.65 16 27 C 0.00 -0.03 7.40 -38.96 -0.29 -0.32 16 28 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.14 1.11 7.60 -52.49 -0.40 0.71 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.40 3.52 6.52 -40.82 -0.27 3.25 16 35 H 0.04 0.74 7.13 -51.93 -0.37 0.37 16 36 H 0.07 1.63 6.01 -51.93 -0.31 1.32 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.12 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.08 0.68 6.31 -51.93 -0.33 0.35 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.17 3.27 5.69 -44.33 -0.25 3.01 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -36.62 379.86 -8.96 -45.58 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.90 Total: 3.26 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -2.86 Total: 7.10 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 1.06 Total: -47.15 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.71 Total: -14.31 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Atomic # 16 Polarization: -13.19 SS G_CDS: -2.60 Total: -15.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.62 -8.96 -45.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195835556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.035 kcal (2) G-P(sol) polarization free energy of solvation -36.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds