Wall clock time and date at job start Wed Apr 1 2020 04:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34706 * 116.99723 * 2 1 4 4 O 1.21469 * 120.00306 * 359.97438 * 3 2 1 5 5 C 1.47742 * 119.99773 * 180.02562 * 3 2 1 6 6 C 1.39667 * 120.11700 * 359.97438 * 5 3 2 7 7 C 1.37969 * 119.99431 * 180.02562 * 6 5 3 8 8 C 1.38262 * 120.23049 * 0.02562 * 7 6 5 9 9 C 1.38967 * 120.22963 * 0.02562 * 8 7 6 10 10 N 1.39927 * 119.99784 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00083 * 134.73567 * 10 9 8 12 12 S 1.71205 * 120.00000 * 4.14916 * 11 10 9 13 13 N 1.34776 * 119.99836 * 184.15186 * 11 10 9 14 14 C 1.46500 * 119.99858 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47263 * 89.99812 * 14 13 11 16 16 H 1.08001 * 119.99516 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00424 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00375 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99719 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47375 * 90.00420 * 19 17 15 21 21 H 1.48496 * 109.47117 * 210.00373 * 19 17 15 22 22 H 1.48505 * 109.47231 * 330.00608 * 19 17 15 23 23 C 1.46500 * 120.00094 * 359.97438 * 13 11 10 24 24 C 1.52999 * 109.46630 * 90.00576 * 23 13 11 25 25 C 1.47203 * 109.46952 * 180.02562 * 24 23 13 26 26 N 8.89861 * 166.30986 * 198.67987 * 5 1 2 27 27 C 1.38631 * 120.00373 * 359.97072 * 9 8 7 28 28 H 1.09008 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47187 * 299.99985 * 1 2 3 30 30 H 1.09001 * 109.47685 * 60.00217 * 1 2 3 31 31 H 1.07995 * 120.00432 * 0.02607 * 6 5 3 32 32 H 1.08002 * 119.88376 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.88628 * 180.02562 * 8 7 6 34 34 H 0.96996 * 119.99796 * 314.74134 * 10 9 8 35 35 H 1.09002 * 109.47460 * 209.99382 * 14 13 11 36 36 H 1.08997 * 109.47281 * 330.00089 * 14 13 11 37 37 H 0.96992 * 120.00396 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.46805 * 210.00323 * 23 13 11 39 39 H 1.08992 * 109.46913 * 330.00651 * 23 13 11 40 40 H 1.08999 * 109.47320 * 299.99432 * 24 23 13 41 41 H 1.08992 * 109.47410 * 60.00380 * 24 23 13 42 42 H 1.08009 * 120.11489 * 179.74901 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3020 0.1078 -0.0006 7 6 5.6796 0.1830 -0.0006 8 6 6.3096 1.4137 0.0000 9 6 5.5596 2.5836 0.0010 10 7 6.2022 3.8266 0.0021 11 6 5.7820 4.8032 -0.8261 12 16 4.3969 4.5603 -1.8026 13 7 6.4521 5.9711 -0.8856 14 6 5.9956 7.0325 -1.7863 15 6 5.0175 7.9205 -1.0611 16 1 4.7613 7.7146 -0.0324 17 6 4.4489 8.9953 -1.7113 18 7 3.5950 9.7699 -1.0787 19 14 4.8916 9.3510 -3.4908 20 1 3.9536 8.6297 -4.3880 21 1 4.7935 10.8111 -3.7430 22 1 6.2798 8.8950 -3.7563 23 6 7.6371 6.1791 -0.0496 24 6 8.8835 5.7195 -0.8085 25 6 10.0742 5.9279 0.0316 26 7 10.9935 6.0903 0.6718 27 6 4.1748 2.5193 0.0010 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8137 -0.8555 -0.0006 32 1 6.2679 -0.7227 -0.0010 33 1 7.3883 1.4661 -0.0005 34 1 6.9502 3.9853 0.5989 35 1 6.8505 7.6245 -2.1131 36 1 5.5084 6.5880 -2.6541 37 1 3.1954 10.5262 -1.5359 38 1 7.7291 7.2377 0.1931 39 1 7.5385 5.6026 0.8701 40 1 8.7915 4.6608 -1.0512 41 1 8.9821 6.2959 -1.7283 42 1 3.5901 3.4275 0.0059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195835556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:31 Heat of formation + Delta-G solvation = -12.311828 kcal Electronic energy + Delta-G solvation = -27185.395543 eV Core-core repulsion = 23257.101564 eV Total energy + Delta-G solvation = -3928.293979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72485 -41.10683 -39.66139 -37.85271 -37.46607 -36.67559 -34.74715 -33.04113 -32.38791 -31.27643 -29.53352 -28.59974 -26.70847 -25.22940 -25.06834 -23.21030 -22.45256 -21.73247 -19.84517 -19.39149 -19.05369 -18.45463 -18.17999 -17.78230 -17.36612 -17.03755 -16.53009 -16.37747 -16.16490 -16.09911 -15.52174 -15.24928 -14.74153 -14.59945 -14.52450 -14.48032 -14.26813 -13.89287 -13.84931 -13.54425 -13.43827 -13.08901 -12.93745 -12.85486 -12.75930 -12.52804 -12.36182 -12.14231 -12.05121 -11.96924 -11.81338 -11.70748 -11.58579 -10.76113 -10.58323 -10.04457 -9.40575 -8.79091 -8.26012 -8.11851 -6.29948 -0.30178 0.08536 0.67716 0.94230 1.37386 1.47236 1.48179 1.52015 1.56446 1.66783 1.79633 1.79873 2.25826 2.38320 2.83595 3.04604 3.12696 3.67408 3.75027 3.80192 3.99641 4.13535 4.24343 4.27045 4.32429 4.34129 4.38610 4.49986 4.55880 4.65776 4.71172 4.83785 4.91597 4.98550 5.16972 5.22004 5.31142 5.42321 5.43239 5.46574 5.64424 5.68834 5.97920 6.26039 6.35860 6.53822 6.70380 6.72829 7.31459 8.91151 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.008866 B = 0.003802 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.367053 B = 7363.500838 C = 9975.943935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.503 3.497 4 O -0.545 6.545 5 C -0.149 4.149 6 C -0.050 4.050 7 C -0.118 4.118 8 C -0.067 4.067 9 C 0.103 3.897 10 N -0.619 5.619 11 C 0.579 3.421 12 S -0.718 6.718 13 N -0.527 5.527 14 C 0.217 3.783 15 C -0.518 4.518 16 H 0.028 0.972 17 C 0.017 3.983 18 N -0.948 5.948 19 Si 0.938 3.062 20 H -0.285 1.285 21 H -0.286 1.286 22 H -0.219 1.219 23 C 0.089 3.911 24 C -0.034 4.034 25 C 0.244 3.756 26 N -0.480 5.480 27 C -0.030 4.030 28 H 0.144 0.856 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.161 0.839 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.425 0.575 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.265 0.735 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.697 -23.759 2.487 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.350 3.650 4 O -0.436 6.436 5 C -0.153 4.153 6 C -0.069 4.069 7 C -0.137 4.137 8 C -0.087 4.087 9 C 0.009 3.991 10 N -0.250 5.250 11 C 0.218 3.782 12 S -0.583 6.583 13 N -0.229 5.229 14 C 0.095 3.905 15 C -0.557 4.557 16 H 0.046 0.954 17 C -0.181 4.181 18 N -0.589 5.589 19 Si 0.761 3.239 20 H -0.211 1.211 21 H -0.212 1.212 22 H -0.141 1.141 23 C -0.038 4.038 24 C -0.075 4.075 25 C -0.074 4.074 26 N -0.157 5.157 27 C -0.054 4.054 28 H 0.162 0.838 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.178 0.822 32 H 0.198 0.802 33 H 0.191 0.809 34 H 0.269 0.731 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.941 -23.045 2.752 25.659 hybrid contribution -0.787 1.548 -0.095 1.739 sum 10.154 -21.497 2.657 23.923 Atomic orbital electron populations 1.23570 0.74698 1.05992 1.02158 1.86493 1.24851 1.31164 1.84137 1.21658 0.90050 0.81403 0.71867 1.90887 1.67768 1.37637 1.47305 1.18865 0.88411 0.95122 1.12865 1.21756 0.94843 0.97124 0.93183 1.21364 0.93448 0.98494 1.00372 1.21620 1.01767 0.89665 0.95690 1.17341 0.90391 0.84372 1.06984 1.42000 1.35192 1.09946 1.37854 1.21705 0.88737 0.82625 0.85147 1.93693 1.22329 1.88381 1.53915 1.47210 1.24990 1.11225 1.39520 1.20054 0.96303 0.84141 0.89985 1.21227 1.25579 1.10271 0.98665 0.95382 1.25680 0.94243 0.95673 1.02542 1.70041 1.31154 1.18220 1.39475 0.85869 0.81360 0.77155 0.79473 1.21101 1.21179 1.14145 1.22010 0.82265 1.06079 0.93411 1.19737 0.83538 1.07183 0.97032 1.28744 0.93908 0.91846 0.92903 1.81144 1.13055 1.10358 1.11143 1.21479 0.94976 0.97670 0.91239 0.83845 0.92282 0.92851 0.82170 0.80161 0.80903 0.73056 0.90570 0.92614 0.92627 0.87278 0.87736 0.84251 0.84540 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.35 -8.51 9.81 -56.16 -0.55 -9.06 16 3 C 0.50 16.26 7.90 70.33 0.56 16.81 16 4 O -0.54 -22.88 16.13 19.94 0.32 -22.56 16 5 C -0.15 -4.19 5.87 -20.11 -0.12 -4.31 16 6 C -0.05 -0.87 9.61 22.55 0.22 -0.65 16 7 C -0.12 -1.33 10.02 22.21 0.22 -1.11 16 8 C -0.07 -0.89 9.96 22.45 0.22 -0.66 16 9 C 0.10 2.41 5.93 38.12 0.23 2.63 16 10 N -0.62 -13.88 5.19 -190.08 -0.99 -14.86 16 11 C 0.58 19.10 7.56 179.06 1.35 20.46 16 12 S -0.72 -33.61 24.23 -56.49 -1.37 -34.98 16 13 N -0.53 -15.99 2.46 -714.18 -1.75 -17.75 16 14 C 0.22 8.69 3.99 85.63 0.34 9.03 16 15 C -0.52 -27.70 9.94 25.60 0.25 -27.45 16 16 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 17 C 0.02 0.93 5.47 84.66 0.46 1.40 16 18 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 19 Si 0.94 42.23 27.47 68.60 1.88 44.11 16 20 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.22 -8.11 6.54 99.48 0.65 -7.46 16 23 C 0.09 1.62 5.16 86.38 0.45 2.07 16 24 C -0.03 -0.36 6.03 28.79 0.17 -0.19 16 25 C 0.24 3.76 15.42 89.49 1.38 5.14 16 26 N -0.48 -10.76 18.51 19.96 0.37 -10.39 16 27 C -0.03 -0.96 7.40 22.67 0.17 -0.79 16 28 H 0.14 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.16 1.96 7.60 -2.91 -0.02 1.94 16 32 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 34 H 0.43 5.64 6.52 -92.71 -0.60 5.03 16 35 H 0.08 2.57 7.13 -2.39 -0.02 2.55 16 36 H 0.06 2.51 6.01 -2.39 -0.01 2.50 16 37 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.11 2.25 8.07 -2.39 -0.02 2.23 16 39 H 0.10 1.38 6.31 -2.39 -0.02 1.37 16 40 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.12 5.03 5.69 -8.09 -0.05 4.98 16 Total: -1.00 -94.30 379.86 5.71 -88.59 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.39 Total: 11.67 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 7.10 Total: 24.11 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -2.07 Total: -101.88 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.23 Total: -31.62 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Atomic # 16 Polarization: -33.61 SS G_CDS: -1.37 Total: -34.98 kcal Total: -94.30 5.71 -88.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195835556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.277 kcal (2) G-P(sol) polarization free energy of solvation -94.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds