Wall clock time and date at job start Wed Apr 1 2020 04:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47155 * 2 1 4 4 C 1.34233 * 116.99982 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99726 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00067 * 179.97438 * 4 3 2 7 7 N 1.46504 * 109.47047 * 180.02562 * 6 4 3 8 8 C 1.46497 * 119.99716 * 269.99809 * 7 6 4 9 9 C 1.50697 * 109.47567 * 270.00056 * 8 7 6 10 10 H 1.08012 * 119.99744 * 0.02562 * 9 8 7 11 11 C 1.37868 * 120.00636 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99712 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00605 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46786 * 59.99839 * 13 11 9 15 15 H 1.48501 * 109.47143 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46853 * 299.99766 * 13 11 9 17 17 C 1.34776 * 119.99963 * 90.00547 * 7 6 4 18 18 S 1.71201 * 119.99951 * 359.97438 * 17 7 6 19 19 N 1.34770 * 119.99918 * 180.02562 * 17 7 6 20 20 C 1.39341 * 120.00167 * 184.25990 * 19 17 7 21 21 C 1.38817 * 120.16290 * 312.52350 * 20 19 17 22 22 C 1.38052 * 120.07340 * 179.97438 * 21 20 19 23 23 C 1.38542 * 120.41389 * 359.97438 * 22 21 20 24 24 C 1.37829 * 120.32899 * 0.02562 * 23 22 21 25 25 C 1.39702 * 119.91357 * 359.97438 * 24 23 22 26 26 C 1.43202 * 120.19856 * 180.02562 * 25 24 23 27 27 N 9.87994 * 148.57873 * 354.06029 * 2 1 3 28 28 H 1.08997 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46727 * 299.99706 * 1 2 3 30 30 H 1.08991 * 109.47163 * 59.99842 * 1 2 3 31 31 H 1.09001 * 109.46639 * 239.99824 * 2 1 3 32 32 H 1.09001 * 109.46709 * 120.00431 * 2 1 3 33 33 H 1.09000 * 109.47177 * 60.00465 * 6 4 3 34 34 H 1.09001 * 109.47321 * 300.00205 * 6 4 3 35 35 H 1.08997 * 109.47145 * 30.00573 * 8 7 6 36 36 H 1.09003 * 109.46487 * 150.00097 * 8 7 6 37 37 H 0.97004 * 120.00233 * 180.02562 * 12 11 9 38 38 H 0.97000 * 119.99812 * 4.25989 * 19 17 7 39 39 H 1.08002 * 119.96077 * 0.24657 * 21 20 19 40 40 H 1.08003 * 119.79081 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.84125 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.03852 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3838 2.8606 0.0001 8 6 6.1152 2.8228 1.2689 9 6 6.4404 4.2286 1.7034 10 1 6.1326 5.0666 1.0954 11 6 7.1307 4.4453 2.8770 12 7 7.5050 3.4249 3.6177 13 14 7.5332 6.1880 3.4160 14 1 6.2737 6.9543 3.5939 15 1 8.2746 6.1496 4.7021 16 1 8.3707 6.8453 2.3807 17 6 6.0569 2.8249 -1.1670 18 16 5.2021 2.8686 -2.6497 19 7 7.4027 2.7538 -1.1669 20 6 8.1033 2.8064 -2.3702 21 6 7.7076 2.0190 -3.4428 22 6 8.4027 2.0730 -4.6343 23 6 9.4975 2.9110 -4.7702 24 6 9.9051 3.7001 -3.7162 25 6 9.2116 3.6563 -2.5042 26 6 9.6294 4.4740 -1.4053 27 7 9.9612 5.1230 -0.5330 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5845 3.4699 0.8895 34 1 3.5853 3.4690 -0.8905 35 1 5.5000 2.3408 2.0287 36 1 7.0394 2.2597 1.1388 37 1 7.9904 3.5773 4.4436 38 1 7.8836 2.6660 -0.3291 39 1 6.8522 1.3667 -3.3463 40 1 8.0911 1.4581 -5.4656 41 1 10.0343 2.9463 -5.7066 42 1 10.7594 4.3514 -3.8271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196313494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:51 Heat of formation + Delta-G solvation = -1.623046 kcal Electronic energy + Delta-G solvation = -27810.654061 eV Core-core repulsion = 23882.823583 eV Total energy + Delta-G solvation = -3927.830479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.50372 -40.03761 -38.36774 -36.42556 -36.11343 -35.19445 -33.12947 -31.81008 -31.26900 -30.07957 -28.93749 -27.42639 -24.46229 -23.80759 -23.46201 -22.54707 -21.25785 -20.61436 -19.12614 -17.86333 -17.77488 -17.60130 -16.84932 -16.43182 -16.18951 -15.56089 -15.43077 -14.97951 -14.78094 -14.26150 -13.94976 -13.90040 -13.80234 -13.61455 -13.03364 -12.90239 -12.79019 -12.61328 -12.51572 -12.32442 -12.07457 -11.86201 -11.66435 -11.62653 -11.57006 -11.40005 -11.21884 -10.94326 -10.81770 -10.46957 -10.44667 -10.34231 -10.09795 -9.29633 -8.92920 -8.83819 -8.23032 -7.41052 -6.88646 -6.46370 -4.59653 0.77879 1.28864 1.88352 2.23305 2.47951 2.59409 2.92666 3.10962 3.14638 3.19148 3.21059 3.25431 3.66235 3.96684 4.08332 4.15808 4.82671 4.88352 4.90609 4.91254 4.99579 5.02727 5.24493 5.24949 5.30491 5.43024 5.52546 5.62671 5.64754 5.72745 5.88284 5.90535 6.02532 6.25297 6.27765 6.46600 6.55570 6.57559 6.66629 6.76517 6.96322 7.23895 7.45539 7.58807 7.59328 7.74534 7.97957 8.47153 9.12619 10.59626 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007195 B = 0.005177 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3890.498203 B = 5406.906166 C = 8740.500729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.357 6.357 4 C 0.459 3.541 5 O -0.499 6.499 6 C 0.122 3.878 7 N -0.522 5.522 8 C 0.228 3.772 9 C -0.557 4.557 10 H 0.067 0.933 11 C 0.077 3.923 12 N -0.883 5.883 13 Si 0.900 3.100 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.268 1.268 17 C 0.583 3.417 18 S -0.676 6.676 19 N -0.633 5.633 20 C 0.188 3.812 21 C -0.071 4.071 22 C -0.089 4.089 23 C -0.122 4.122 24 C -0.073 4.073 25 C -0.032 4.032 26 C 0.238 3.762 27 N -0.394 5.394 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.271 0.729 38 H 0.421 0.579 39 H 0.155 0.845 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.652 -5.591 -11.328 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.274 6.274 4 C 0.300 3.700 5 O -0.385 6.385 6 C -0.004 4.004 7 N -0.225 5.225 8 C 0.107 3.893 9 C -0.595 4.595 10 H 0.085 0.915 11 C -0.129 4.129 12 N -0.519 5.519 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.193 1.193 17 C 0.223 3.777 18 S -0.544 6.544 19 N -0.261 5.261 20 C 0.090 3.910 21 C -0.093 4.093 22 C -0.110 4.110 23 C -0.141 4.141 24 C -0.095 4.095 25 C -0.039 4.039 26 C -0.078 4.078 27 N -0.069 5.069 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.264 0.736 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.489 -4.921 -10.542 12.145 hybrid contribution 0.794 0.422 1.459 1.714 sum -2.695 -4.498 -9.083 10.488 Atomic orbital electron populations 1.21792 0.92777 1.02708 1.03527 1.22972 0.95135 0.80502 1.02509 1.86472 1.24352 1.32169 1.84366 1.24052 0.80703 0.93062 0.72220 1.90664 1.60345 1.42788 1.44710 1.21234 0.78684 0.91598 1.08878 1.47105 1.05934 1.63384 1.06045 1.19875 0.92320 0.98915 0.78203 1.21251 1.39090 0.91120 1.08020 0.91467 1.24899 0.94351 0.98045 0.95630 1.69901 1.37157 1.30643 1.14202 0.86480 0.78981 0.83602 0.78327 1.19761 1.20828 1.19312 1.22011 0.84596 0.79409 0.91677 1.93042 1.67933 1.77144 1.16298 1.42158 1.03935 1.70445 1.09601 1.17362 0.91680 0.95266 0.86688 1.21491 0.98494 0.97556 0.91758 1.21163 0.94290 0.98308 0.97213 1.21042 0.97520 0.96995 0.98540 1.20881 0.99073 0.99016 0.90503 1.15959 0.99708 0.97263 0.90961 1.25620 0.94502 0.94264 0.93418 1.81347 1.07986 1.08925 1.08596 0.90480 0.91510 0.91409 0.91269 0.91442 0.84858 0.83598 0.92709 0.94496 0.91906 0.73647 0.82794 0.85075 0.85161 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.36 -5.32 10.22 -39.27 -0.40 -5.72 16 4 C 0.46 7.95 8.02 36.00 0.29 8.24 16 5 O -0.50 -9.99 16.18 -18.76 -0.30 -10.29 16 6 C 0.12 2.08 5.76 -5.19 -0.03 2.05 16 7 N -0.52 -10.30 1.94 -178.47 -0.35 -10.65 16 8 C 0.23 5.10 4.96 -5.20 -0.03 5.08 16 9 C -0.56 -13.73 9.39 -34.45 -0.32 -14.05 16 10 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 11 C 0.08 1.97 5.46 -17.82 -0.10 1.87 16 12 N -0.88 -23.56 13.29 55.43 0.74 -22.83 16 13 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 17 C 0.58 11.44 7.56 -86.92 -0.66 10.78 16 18 S -0.68 -13.40 24.40 -107.50 -2.62 -16.02 16 19 N -0.63 -11.63 4.67 -11.21 -0.05 -11.68 16 20 C 0.19 2.99 5.87 -83.45 -0.49 2.50 16 21 C -0.07 -1.01 7.87 -39.44 -0.31 -1.32 16 22 C -0.09 -0.96 10.03 -39.54 -0.40 -1.36 16 23 C -0.12 -1.16 10.02 -39.62 -0.40 -1.56 16 24 C -0.07 -0.81 9.75 -39.18 -0.38 -1.19 16 25 C -0.03 -0.48 5.75 -106.65 -0.61 -1.09 16 26 C 0.24 4.16 14.64 -22.45 -0.33 3.83 16 27 N -0.39 -7.99 18.54 41.87 0.78 -7.21 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.13 2.04 8.07 -51.93 -0.42 1.62 16 34 H 0.15 2.42 6.58 -51.93 -0.34 2.08 16 35 H 0.05 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.04 0.87 6.30 -51.93 -0.33 0.54 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.42 8.12 6.26 -40.82 -0.26 7.87 16 39 H 0.15 2.44 6.30 -49.59 -0.31 2.13 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -31.20 384.25 -9.60 -40.80 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.00 Total: 8.28 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -3.15 Total: 13.83 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 1.11 Total: -52.37 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.70 Total: -16.01 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -13.40 SS G_CDS: -2.62 Total: -16.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.20 -9.60 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196313494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.175 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds