Wall clock time and date at job start Wed Apr 1 2020 04:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45196 * 109.47155 * 2 1 4 4 C 1.34233 * 116.99982 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99726 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00067 * 179.97438 * 4 3 2 7 7 N 1.46504 * 109.47047 * 180.02562 * 6 4 3 8 8 C 1.46497 * 119.99716 * 269.99809 * 7 6 4 9 9 C 1.50697 * 109.47567 * 270.00056 * 8 7 6 10 10 H 1.08012 * 119.99744 * 0.02562 * 9 8 7 11 11 C 1.37868 * 120.00636 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99712 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00605 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46786 * 59.99839 * 13 11 9 15 15 H 1.48501 * 109.47143 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46853 * 299.99766 * 13 11 9 17 17 C 1.34776 * 119.99963 * 90.00547 * 7 6 4 18 18 S 1.71201 * 119.99951 * 359.97438 * 17 7 6 19 19 N 1.34770 * 119.99918 * 180.02562 * 17 7 6 20 20 C 1.39341 * 120.00167 * 184.25990 * 19 17 7 21 21 C 1.38817 * 120.16290 * 312.52350 * 20 19 17 22 22 C 1.38052 * 120.07340 * 179.97438 * 21 20 19 23 23 C 1.38542 * 120.41389 * 359.97438 * 22 21 20 24 24 C 1.37829 * 120.32899 * 0.02562 * 23 22 21 25 25 C 1.39702 * 119.91357 * 359.97438 * 24 23 22 26 26 C 1.43202 * 120.19856 * 180.02562 * 25 24 23 27 27 N 9.87994 * 148.57873 * 354.06029 * 2 1 3 28 28 H 1.08997 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46727 * 299.99706 * 1 2 3 30 30 H 1.08991 * 109.47163 * 59.99842 * 1 2 3 31 31 H 1.09001 * 109.46639 * 239.99824 * 2 1 3 32 32 H 1.09001 * 109.46709 * 120.00431 * 2 1 3 33 33 H 1.09000 * 109.47177 * 60.00465 * 6 4 3 34 34 H 1.09001 * 109.47321 * 300.00205 * 6 4 3 35 35 H 1.08997 * 109.47145 * 30.00573 * 8 7 6 36 36 H 1.09003 * 109.46487 * 150.00097 * 8 7 6 37 37 H 0.97004 * 120.00233 * 180.02562 * 12 11 9 38 38 H 0.97000 * 119.99812 * 4.25989 * 19 17 7 39 39 H 1.08002 * 119.96077 * 0.24657 * 21 20 19 40 40 H 1.08003 * 119.79081 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.84125 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.03852 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3838 2.8606 0.0001 8 6 6.1152 2.8228 1.2689 9 6 6.4404 4.2286 1.7034 10 1 6.1326 5.0666 1.0954 11 6 7.1307 4.4453 2.8770 12 7 7.5050 3.4249 3.6177 13 14 7.5332 6.1880 3.4160 14 1 6.2737 6.9543 3.5939 15 1 8.2746 6.1496 4.7021 16 1 8.3707 6.8453 2.3807 17 6 6.0569 2.8249 -1.1670 18 16 5.2021 2.8686 -2.6497 19 7 7.4027 2.7538 -1.1669 20 6 8.1033 2.8064 -2.3702 21 6 7.7076 2.0190 -3.4428 22 6 8.4027 2.0730 -4.6343 23 6 9.4975 2.9110 -4.7702 24 6 9.9051 3.7001 -3.7162 25 6 9.2116 3.6563 -2.5042 26 6 9.6294 4.4740 -1.4053 27 7 9.9612 5.1230 -0.5330 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5845 3.4699 0.8895 34 1 3.5853 3.4690 -0.8905 35 1 5.5000 2.3408 2.0287 36 1 7.0394 2.2597 1.1388 37 1 7.9904 3.5773 4.4436 38 1 7.8836 2.6660 -0.3291 39 1 6.8522 1.3667 -3.3463 40 1 8.0911 1.4581 -5.4656 41 1 10.0343 2.9463 -5.7066 42 1 10.7594 4.3514 -3.8271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196313494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:50 Heat of formation + Delta-G solvation = -16.587428 kcal Electronic energy + Delta-G solvation = -27811.302966 eV Core-core repulsion = 23882.823583 eV Total energy + Delta-G solvation = -3928.479383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.86776 -41.26488 -39.69584 -37.72733 -37.50394 -36.56552 -35.05276 -32.77060 -32.33308 -31.21304 -30.64316 -28.84096 -26.19725 -24.89364 -24.64745 -23.66008 -22.51955 -22.06802 -20.37785 -19.29797 -19.22729 -18.89217 -18.59958 -17.66445 -17.51392 -16.90748 -16.78657 -16.52290 -15.90871 -15.62066 -15.30537 -15.19590 -15.06656 -14.89045 -14.39024 -14.25234 -14.10463 -13.93240 -13.78610 -13.59530 -13.52380 -13.26769 -13.06280 -12.85438 -12.80488 -12.61736 -12.53461 -12.50306 -12.33230 -12.12223 -11.99435 -11.73116 -11.53678 -10.84014 -10.65682 -9.99145 -9.49197 -8.97365 -8.44540 -8.35971 -6.62138 -0.36988 0.16361 0.57422 0.74492 1.09997 1.22157 1.28467 1.33058 1.38763 1.56343 1.83165 1.96904 2.13612 2.26807 2.81457 2.88354 2.94022 3.64298 3.86445 3.91937 4.01486 4.09602 4.17112 4.21043 4.28694 4.34609 4.43274 4.48328 4.52833 4.75509 4.81861 4.93476 4.94647 5.06876 5.12773 5.18735 5.34348 5.40555 5.42692 5.48518 5.58881 5.64748 5.73399 5.93394 6.12139 6.40595 6.48435 6.64595 7.11974 8.60516 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007195 B = 0.005177 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3890.498203 B = 5406.906166 C = 8740.500729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.464 3.536 5 O -0.531 6.531 6 C 0.120 3.880 7 N -0.530 5.530 8 C 0.247 3.753 9 C -0.553 4.553 10 H 0.059 0.941 11 C 0.038 3.962 12 N -0.909 5.909 13 Si 0.948 3.052 14 H -0.260 1.260 15 H -0.278 1.278 16 H -0.284 1.284 17 C 0.578 3.422 18 S -0.684 6.684 19 N -0.633 5.633 20 C 0.156 3.844 21 C -0.084 4.084 22 C -0.073 4.073 23 C -0.100 4.100 24 C -0.059 4.059 25 C -0.053 4.053 26 C 0.261 3.739 27 N -0.456 5.456 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.040 0.960 36 H 0.023 0.977 37 H 0.272 0.728 38 H 0.412 0.588 39 H 0.134 0.866 40 H 0.164 0.836 41 H 0.179 0.821 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -5.566 -13.920 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 O -0.269 6.269 4 C 0.306 3.694 5 O -0.420 6.420 6 C -0.005 4.005 7 N -0.233 5.233 8 C 0.125 3.875 9 C -0.591 4.591 10 H 0.077 0.923 11 C -0.165 4.165 12 N -0.547 5.547 13 Si 0.774 3.226 14 H -0.184 1.184 15 H -0.203 1.203 16 H -0.210 1.210 17 C 0.217 3.783 18 S -0.552 6.552 19 N -0.259 5.259 20 C 0.060 3.940 21 C -0.106 4.106 22 C -0.094 4.094 23 C -0.119 4.119 24 C -0.080 4.080 25 C -0.059 4.059 26 C -0.054 4.054 27 N -0.132 5.132 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.253 0.747 39 H 0.151 0.849 40 H 0.181 0.819 41 H 0.196 0.804 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.577 -4.891 -13.172 14.499 hybrid contribution 0.832 0.313 2.068 2.251 sum -2.744 -4.579 -11.104 12.320 Atomic orbital electron populations 1.21816 0.89738 1.04493 1.03907 1.23323 0.97453 0.78998 1.02257 1.86473 1.22766 1.34017 1.83667 1.24033 0.81329 0.92650 0.71376 1.90647 1.61250 1.43705 1.46436 1.21393 0.77318 0.91916 1.09871 1.46999 1.06863 1.64280 1.05171 1.19401 0.91692 0.97341 0.79043 1.21375 1.38338 0.91838 1.07577 0.92292 1.25495 0.94493 1.00576 0.95948 1.69972 1.38117 1.31951 1.14639 0.85733 0.78911 0.80465 0.77536 1.18422 1.20276 1.20998 1.22139 0.85160 0.79494 0.91475 1.92896 1.68155 1.77732 1.16450 1.42301 1.03620 1.69676 1.10331 1.17665 0.92682 0.97254 0.86410 1.21406 0.98912 0.97560 0.92758 1.21594 0.93556 0.97861 0.96348 1.21556 0.96319 0.94475 0.99505 1.21319 0.98874 0.98784 0.89037 1.16176 1.00373 0.97769 0.91610 1.26132 0.92943 0.93239 0.93037 1.81347 1.10247 1.11297 1.10267 0.87961 0.91070 0.91044 0.91668 0.91679 0.83345 0.82973 0.94164 0.95935 0.91880 0.74733 0.84861 0.81854 0.80398 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 10.29 71.98 0.74 -1.50 16 2 C 0.05 1.27 6.19 71.98 0.45 1.71 16 3 O -0.35 -10.46 10.22 -51.45 -0.53 -10.99 16 4 C 0.46 16.35 8.02 71.23 0.57 16.93 16 5 O -0.53 -21.91 16.18 21.94 0.36 -21.56 16 6 C 0.12 4.16 5.76 85.63 0.49 4.65 16 7 N -0.53 -21.59 1.94 -718.55 -1.40 -22.99 16 8 C 0.25 11.54 4.96 85.63 0.43 11.97 16 9 C -0.55 -28.00 9.39 25.60 0.24 -27.76 16 10 H 0.06 3.05 7.81 -2.90 -0.02 3.03 16 11 C 0.04 1.98 5.46 84.65 0.46 2.44 16 12 N -0.91 -49.66 13.29 21.44 0.28 -49.37 16 13 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 14 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 17 C 0.58 23.32 7.56 179.06 1.35 24.67 16 18 S -0.68 -27.18 24.40 -56.49 -1.38 -28.55 16 19 N -0.63 -24.14 4.67 -189.37 -0.89 -25.03 16 20 C 0.16 4.97 5.87 38.59 0.23 5.20 16 21 C -0.08 -2.31 7.87 22.36 0.18 -2.13 16 22 C -0.07 -1.31 10.03 22.30 0.22 -1.09 16 23 C -0.10 -1.39 10.02 22.25 0.22 -1.17 16 24 C -0.06 -1.10 9.75 22.53 0.22 -0.88 16 25 C -0.05 -1.51 5.75 -21.18 -0.12 -1.63 16 26 C 0.26 9.27 14.64 88.32 1.29 10.56 16 27 N -0.46 -19.08 18.54 19.01 0.35 -18.73 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 32 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 33 H 0.15 4.60 8.07 -2.39 -0.02 4.58 16 34 H 0.15 5.08 6.58 -2.39 -0.02 5.07 16 35 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 36 H 0.02 1.13 6.30 -2.39 -0.02 1.11 16 37 H 0.27 14.24 8.31 -92.71 -0.77 13.46 16 38 H 0.41 16.87 6.26 -92.71 -0.58 16.29 16 39 H 0.13 4.23 6.30 -4.75 -0.03 4.20 16 40 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 42 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -70.40 384.25 6.28 -64.11 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.48 Total: 25.95 kcal Atomic # 6 Polarization: 35.00 SS G_CDS: 6.97 Total: 41.97 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -1.65 Total: -116.12 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.17 Total: -32.54 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -27.18 SS G_CDS: -1.38 Total: -28.55 kcal Total: -70.40 6.28 -64.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196313494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.523 kcal (2) G-P(sol) polarization free energy of solvation -70.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds