Wall clock time and date at job start Wed Apr 1 2020 04:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.47415 * 2 1 4 4 C 1.34224 * 117.00345 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00121 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00496 * 179.97438 * 4 3 2 7 7 N 1.46498 * 109.47331 * 179.97438 * 6 4 3 8 8 C 1.46498 * 120.00063 * 269.99957 * 7 6 4 9 9 C 1.50694 * 109.47596 * 270.00062 * 8 7 6 10 10 H 1.08007 * 119.99587 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00468 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99848 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00228 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46910 * 90.00312 * 13 11 9 15 15 H 1.48501 * 109.47135 * 209.99597 * 13 11 9 16 16 H 1.48499 * 109.47146 * 330.00387 * 13 11 9 17 17 C 1.34778 * 119.99633 * 90.00580 * 7 6 4 18 18 S 1.71205 * 120.00002 * 359.97438 * 17 7 6 19 19 N 1.34777 * 119.99744 * 180.02562 * 17 7 6 20 20 C 1.39918 * 119.99850 * 184.14196 * 19 17 7 21 21 C 1.39002 * 120.00264 * 134.66892 * 20 19 17 22 22 C 1.38210 * 120.24023 * 180.02562 * 21 20 19 23 23 C 1.38017 * 120.22718 * 359.73664 * 22 21 20 24 24 C 1.39640 * 119.98822 * 0.54169 * 23 22 21 25 25 C 1.43203 * 120.11360 * 179.74186 * 24 23 22 26 26 N 9.05465 * 132.18860 * 276.05775 * 2 1 3 27 27 C 1.38593 * 119.99490 * 314.68898 * 20 19 17 28 28 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46770 * 299.99936 * 1 2 3 30 30 H 1.08997 * 109.46989 * 59.99839 * 1 2 3 31 31 H 1.09001 * 109.46770 * 240.00064 * 2 1 3 32 32 H 1.09002 * 109.46918 * 120.00658 * 2 1 3 33 33 H 1.09005 * 109.46915 * 60.00059 * 6 4 3 34 34 H 1.08999 * 109.46883 * 300.00669 * 6 4 3 35 35 H 1.08996 * 109.47118 * 30.00908 * 8 7 6 36 36 H 1.09006 * 109.46550 * 150.00223 * 8 7 6 37 37 H 0.97000 * 120.00375 * 180.02562 * 12 11 9 38 38 H 0.97001 * 120.00308 * 4.13634 * 19 17 7 39 39 H 1.07997 * 119.87687 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.88878 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.00535 * 180.27588 * 23 22 21 42 42 H 1.08001 * 120.11642 * 0.02803 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9373 -0.0012 7 7 5.3838 2.8606 -0.0010 8 6 6.1153 2.8228 1.2677 9 6 6.4405 4.2286 1.7022 10 1 6.1327 5.0665 1.0942 11 6 7.1310 4.4452 2.8758 12 7 7.5062 3.4249 3.6158 13 14 7.5347 6.1879 3.4139 14 1 6.4311 6.7138 4.2570 15 1 8.7968 6.1844 4.1965 16 1 7.6971 7.0507 2.2163 17 6 6.0568 2.8248 -1.1683 18 16 5.2019 2.8685 -2.6509 19 7 7.4027 2.7537 -1.1682 20 6 8.1060 2.8040 -2.3767 21 6 9.2306 3.6126 -2.4933 22 6 9.9287 3.6664 -3.6850 23 6 9.5170 2.9135 -4.7660 24 6 8.3852 2.1025 -4.6612 25 6 7.9525 1.3244 -5.7829 26 7 7.6109 0.7080 -6.6715 27 6 7.6809 2.0480 -3.4577 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5853 3.4697 0.8888 34 1 3.5845 3.4692 -0.8911 35 1 5.5002 2.3408 2.0275 36 1 7.0395 2.2597 1.1376 37 1 7.9916 3.5772 4.4417 38 1 7.8838 2.6677 -0.3303 39 1 9.5596 4.2015 -1.6499 40 1 10.8019 4.2963 -3.7692 41 1 10.0678 2.9549 -5.6940 42 1 6.8069 1.4197 -3.3694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197704482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:54 Heat of formation + Delta-G solvation = -3.196582 kcal Electronic energy + Delta-G solvation = -27376.930800 eV Core-core repulsion = 23449.032088 eV Total energy + Delta-G solvation = -3927.898712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47711 -39.97935 -38.46233 -36.65822 -36.20780 -35.06406 -33.20244 -31.80967 -31.31455 -30.08986 -28.96761 -27.41245 -24.57955 -23.87657 -23.49127 -22.55743 -21.29393 -20.59640 -19.41787 -17.79350 -17.73303 -17.04744 -16.79652 -16.43614 -16.27325 -15.89421 -15.46158 -15.15126 -14.93087 -14.27279 -13.99845 -13.90502 -13.83614 -13.64675 -13.04938 -13.03709 -12.85417 -12.72870 -12.60638 -12.32170 -12.12756 -11.88732 -11.71625 -11.65115 -11.57724 -11.44551 -11.30771 -11.05762 -10.84957 -10.48595 -10.44598 -10.40053 -10.12648 -9.33061 -8.98050 -8.93367 -8.23398 -7.43218 -6.88404 -6.53866 -4.67483 0.79498 1.23850 1.86805 2.22409 2.47703 2.58513 2.78675 3.00298 3.03165 3.12168 3.14783 3.18780 3.65743 3.96637 4.02257 4.06563 4.79515 4.82487 4.90759 4.90963 4.99738 5.04072 5.15685 5.24953 5.25896 5.43241 5.49307 5.62840 5.63482 5.73092 5.81152 5.89962 6.00394 6.21203 6.28252 6.35428 6.50568 6.57328 6.64499 6.73575 6.94590 7.23564 7.39980 7.52698 7.59336 7.62373 7.97645 8.40720 9.03872 10.51998 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.006350 B = 0.004902 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4408.317056 B = 5710.506105 C = 9556.726874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.357 6.357 4 C 0.458 3.542 5 O -0.499 6.499 6 C 0.122 3.878 7 N -0.523 5.523 8 C 0.226 3.774 9 C -0.557 4.557 10 H 0.070 0.930 11 C 0.072 3.928 12 N -0.883 5.883 13 Si 0.905 3.095 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.582 3.418 18 S -0.681 6.681 19 N -0.628 5.628 20 C 0.138 3.862 21 C -0.092 4.092 22 C -0.119 4.119 23 C -0.073 4.073 24 C -0.033 4.033 25 C 0.268 3.732 26 N -0.430 5.430 27 C -0.021 4.021 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.271 0.729 38 H 0.422 0.578 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 -1.041 -5.009 5.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.274 6.274 4 C 0.299 3.701 5 O -0.385 6.385 6 C -0.004 4.004 7 N -0.226 5.226 8 C 0.106 3.894 9 C -0.595 4.595 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.519 5.519 13 Si 0.732 3.268 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.194 1.194 17 C 0.221 3.779 18 S -0.548 6.548 19 N -0.256 5.256 20 C 0.043 3.957 21 C -0.114 4.114 22 C -0.138 4.138 23 C -0.094 4.094 24 C -0.039 4.039 25 C -0.047 4.047 26 N -0.106 5.106 27 C -0.047 4.047 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.266 0.734 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.010 -2.342 -6.972 7.625 hybrid contribution 0.987 0.906 2.152 2.535 sum -1.022 -1.436 -4.820 5.133 Atomic orbital electron populations 1.21793 0.92768 1.02720 1.03521 1.22972 0.95147 0.80493 1.02512 1.86467 1.24376 1.32178 1.84354 1.24080 0.80712 0.93116 0.72237 1.90665 1.60342 1.42821 1.44698 1.21229 0.78781 0.91534 1.08821 1.47067 1.05859 1.63699 1.05980 1.19882 0.92441 0.98874 0.78252 1.21349 1.38829 0.91298 1.08015 0.91210 1.24960 0.94650 0.98082 0.95679 1.69917 1.37206 1.30601 1.14157 0.86363 0.78184 0.83276 0.79014 1.20135 1.20800 1.19443 1.22008 0.84908 0.79439 0.91504 1.93155 1.67908 1.77458 1.16242 1.42224 1.03585 1.70301 1.09496 1.17211 0.94107 0.98202 0.86139 1.21269 0.95165 0.96035 0.98899 1.20754 1.00707 1.00399 0.91956 1.21111 0.94336 0.94810 0.99176 1.15690 0.98083 1.00521 0.89607 1.25527 0.93199 0.93084 0.92862 1.81114 1.08409 1.10037 1.11027 1.21623 0.96724 0.96039 0.90285 0.90479 0.91494 0.91417 0.91297 0.91421 0.84873 0.83648 0.92827 0.94204 0.91897 0.73444 0.84705 0.84688 0.85201 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 37.16 0.38 -0.97 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -5.34 10.22 -39.24 -0.40 -5.74 16 4 C 0.46 7.88 8.02 36.01 0.29 8.17 16 5 O -0.50 -9.98 16.18 -18.75 -0.30 -10.28 16 6 C 0.12 2.02 5.76 -5.19 -0.03 1.99 16 7 N -0.52 -9.75 1.94 -178.46 -0.35 -10.09 16 8 C 0.23 4.70 4.96 -5.20 -0.03 4.67 16 9 C -0.56 -12.48 9.39 -34.45 -0.32 -12.80 16 10 H 0.07 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.88 -21.73 13.29 55.43 0.74 -21.00 16 13 Si 0.91 18.35 29.54 -169.99 -5.02 13.33 16 14 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 15 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 C 0.58 10.87 7.56 -86.92 -0.66 10.21 16 18 S -0.68 -13.63 24.22 -107.50 -2.60 -16.23 16 19 N -0.63 -10.40 5.19 -11.43 -0.06 -10.46 16 20 C 0.14 2.02 5.93 -83.75 -0.50 1.52 16 21 C -0.09 -1.09 9.96 -39.31 -0.39 -1.48 16 22 C -0.12 -1.15 10.02 -39.67 -0.40 -1.55 16 23 C -0.07 -0.75 9.75 -39.14 -0.38 -1.13 16 24 C -0.03 -0.44 5.73 -106.96 -0.61 -1.05 16 25 C 0.27 3.94 15.32 -22.53 -0.35 3.60 16 26 N -0.43 -7.09 18.52 41.76 0.77 -6.32 16 27 C -0.02 -0.32 7.57 -38.96 -0.30 -0.61 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 33 H 0.13 1.94 8.07 -51.93 -0.42 1.52 16 34 H 0.15 2.36 6.58 -51.93 -0.34 2.01 16 35 H 0.05 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.04 0.85 6.30 -51.93 -0.33 0.53 16 37 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 38 H 0.42 6.91 6.52 -40.82 -0.27 6.64 16 39 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.16 2.75 6.09 -44.04 -0.27 2.48 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -29.32 384.97 -9.54 -38.86 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.97 Total: 8.99 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: -3.15 Total: 13.14 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 1.10 Total: -47.87 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.70 Total: -16.03 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.33 kcal Atomic # 16 Polarization: -13.63 SS G_CDS: -2.60 Total: -16.23 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.32 -9.54 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197704482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.664 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds