Wall clock time and date at job start Wed Apr 1 2020 04:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45192 * 109.47415 * 2 1 4 4 C 1.34224 * 117.00345 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00121 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00496 * 179.97438 * 4 3 2 7 7 N 1.46498 * 109.47331 * 179.97438 * 6 4 3 8 8 C 1.46498 * 120.00063 * 269.99957 * 7 6 4 9 9 C 1.50694 * 109.47596 * 270.00062 * 8 7 6 10 10 H 1.08007 * 119.99587 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00468 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99848 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00228 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46910 * 90.00312 * 13 11 9 15 15 H 1.48501 * 109.47135 * 209.99597 * 13 11 9 16 16 H 1.48499 * 109.47146 * 330.00387 * 13 11 9 17 17 C 1.34778 * 119.99633 * 90.00580 * 7 6 4 18 18 S 1.71205 * 120.00002 * 359.97438 * 17 7 6 19 19 N 1.34777 * 119.99744 * 180.02562 * 17 7 6 20 20 C 1.39918 * 119.99850 * 184.14196 * 19 17 7 21 21 C 1.39002 * 120.00264 * 134.66892 * 20 19 17 22 22 C 1.38210 * 120.24023 * 180.02562 * 21 20 19 23 23 C 1.38017 * 120.22718 * 359.73664 * 22 21 20 24 24 C 1.39640 * 119.98822 * 0.54169 * 23 22 21 25 25 C 1.43203 * 120.11360 * 179.74186 * 24 23 22 26 26 N 9.05465 * 132.18860 * 276.05775 * 2 1 3 27 27 C 1.38593 * 119.99490 * 314.68898 * 20 19 17 28 28 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46770 * 299.99936 * 1 2 3 30 30 H 1.08997 * 109.46989 * 59.99839 * 1 2 3 31 31 H 1.09001 * 109.46770 * 240.00064 * 2 1 3 32 32 H 1.09002 * 109.46918 * 120.00658 * 2 1 3 33 33 H 1.09005 * 109.46915 * 60.00059 * 6 4 3 34 34 H 1.08999 * 109.46883 * 300.00669 * 6 4 3 35 35 H 1.08996 * 109.47118 * 30.00908 * 8 7 6 36 36 H 1.09006 * 109.46550 * 150.00223 * 8 7 6 37 37 H 0.97000 * 120.00375 * 180.02562 * 12 11 9 38 38 H 0.97001 * 120.00308 * 4.13634 * 19 17 7 39 39 H 1.07997 * 119.87687 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.88878 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.00535 * 180.27588 * 23 22 21 42 42 H 1.08001 * 120.11642 * 0.02803 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9373 -0.0012 7 7 5.3838 2.8606 -0.0010 8 6 6.1153 2.8228 1.2677 9 6 6.4405 4.2286 1.7022 10 1 6.1327 5.0665 1.0942 11 6 7.1310 4.4452 2.8758 12 7 7.5062 3.4249 3.6158 13 14 7.5347 6.1879 3.4139 14 1 6.4311 6.7138 4.2570 15 1 8.7968 6.1844 4.1965 16 1 7.6971 7.0507 2.2163 17 6 6.0568 2.8248 -1.1683 18 16 5.2019 2.8685 -2.6509 19 7 7.4027 2.7537 -1.1682 20 6 8.1060 2.8040 -2.3767 21 6 9.2306 3.6126 -2.4933 22 6 9.9287 3.6664 -3.6850 23 6 9.5170 2.9135 -4.7660 24 6 8.3852 2.1025 -4.6612 25 6 7.9525 1.3244 -5.7829 26 7 7.6109 0.7080 -6.6715 27 6 7.6809 2.0480 -3.4577 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5853 3.4697 0.8888 34 1 3.5845 3.4692 -0.8911 35 1 5.5002 2.3408 2.0275 36 1 7.0395 2.2597 1.1376 37 1 7.9916 3.5772 4.4417 38 1 7.8838 2.6677 -0.3303 39 1 9.5596 4.2015 -1.6499 40 1 10.8019 4.2963 -3.7692 41 1 10.0678 2.9549 -5.6940 42 1 6.8069 1.4197 -3.3694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197704482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:53 Heat of formation + Delta-G solvation = -16.208650 kcal Electronic energy + Delta-G solvation = -27377.495045 eV Core-core repulsion = 23449.032088 eV Total energy + Delta-G solvation = -3928.462958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82377 -41.15969 -39.73496 -37.91247 -37.49193 -36.35301 -34.94293 -32.78890 -32.32618 -31.21050 -30.55569 -28.77069 -26.14460 -25.00324 -24.61871 -23.62832 -22.52384 -22.01879 -20.58496 -19.24062 -19.13044 -18.57228 -18.22908 -17.66417 -17.32618 -17.11255 -16.68357 -16.57866 -16.27833 -15.59245 -15.27896 -15.17135 -15.03485 -14.72841 -14.31236 -14.24533 -14.17813 -13.85185 -13.72183 -13.60248 -13.47022 -13.23058 -12.95638 -12.86301 -12.70345 -12.62600 -12.53065 -12.44093 -12.39738 -12.04787 -11.91925 -11.68531 -11.56158 -10.72722 -10.62816 -10.00844 -9.46053 -8.98584 -8.37219 -8.30795 -6.50624 -0.24578 0.07298 0.61897 0.77463 1.09974 1.24948 1.43657 1.48646 1.56598 1.60961 1.85049 1.98877 2.24435 2.39160 2.91211 2.94186 3.00691 3.64137 3.91065 3.98964 4.01644 4.07124 4.13797 4.18973 4.29133 4.31172 4.34540 4.45163 4.55970 4.79929 4.85875 4.88075 4.91833 5.10062 5.11367 5.23135 5.38597 5.40420 5.40589 5.42610 5.60192 5.72686 5.77252 5.94993 6.24375 6.45432 6.61902 6.63981 7.23692 8.73868 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.006350 B = 0.004902 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4408.317056 B = 5710.506105 C = 9556.726874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.461 3.539 5 O -0.533 6.533 6 C 0.121 3.879 7 N -0.527 5.527 8 C 0.243 3.757 9 C -0.554 4.554 10 H 0.067 0.933 11 C 0.033 3.967 12 N -0.914 5.914 13 Si 0.963 3.037 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.583 3.417 18 S -0.714 6.714 19 N -0.619 5.619 20 C 0.107 3.893 21 C -0.084 4.084 22 C -0.101 4.101 23 C -0.052 4.052 24 C -0.043 4.043 25 C 0.284 3.716 26 N -0.468 5.468 27 C -0.035 4.035 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.272 0.728 38 H 0.422 0.578 39 H 0.149 0.851 40 H 0.179 0.821 41 H 0.165 0.835 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.160 0.745 -5.401 5.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.303 3.697 5 O -0.423 6.423 6 C -0.004 4.004 7 N -0.231 5.231 8 C 0.121 3.879 9 C -0.592 4.592 10 H 0.085 0.915 11 C -0.170 4.170 12 N -0.551 5.551 13 Si 0.788 3.212 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.190 1.190 17 C 0.221 3.779 18 S -0.582 6.582 19 N -0.246 5.246 20 C 0.014 3.986 21 C -0.105 4.105 22 C -0.120 4.120 23 C -0.073 4.073 24 C -0.049 4.049 25 C -0.030 4.030 26 N -0.144 5.144 27 C -0.060 4.060 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.265 0.735 39 H 0.167 0.833 40 H 0.197 0.803 41 H 0.182 0.818 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.729 -0.553 -7.399 7.456 hybrid contribution 0.630 0.311 2.235 2.343 sum -0.099 -0.243 -5.164 5.171 Atomic orbital electron populations 1.21815 0.89706 1.04472 1.03940 1.23303 0.97498 0.79112 1.02117 1.86469 1.22974 1.33871 1.83688 1.24197 0.81259 0.92937 0.71295 1.90646 1.61244 1.43856 1.46508 1.21387 0.77747 0.91463 1.09825 1.46995 1.06608 1.64240 1.05234 1.19509 0.91837 0.97932 0.78585 1.21472 1.38221 0.91704 1.07800 0.91486 1.25618 0.94588 1.01014 0.95759 1.70009 1.38187 1.32306 1.14628 0.85459 0.77700 0.79487 0.78515 1.20220 1.20795 1.18997 1.21939 0.85676 0.79507 0.90799 1.93139 1.68761 1.78892 1.17367 1.42302 1.02900 1.69046 1.10388 1.17466 0.95547 1.00185 0.85383 1.21551 0.93688 0.94912 1.00385 1.21235 1.00980 0.99526 0.90257 1.21532 0.92534 0.92495 1.00737 1.15769 0.99348 1.01502 0.88254 1.25787 0.92234 0.92392 0.92573 1.81119 1.09580 1.11288 1.12430 1.21314 0.96623 0.96525 0.91552 0.88035 0.90810 0.91205 0.92132 0.91504 0.83022 0.83268 0.94817 0.95024 0.91896 0.73472 0.83324 0.80337 0.81758 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.29 71.98 0.74 -1.63 16 2 C 0.05 1.33 6.19 71.98 0.45 1.77 16 3 O -0.35 -10.71 10.22 -51.36 -0.52 -11.23 16 4 C 0.46 16.33 8.02 71.24 0.57 16.90 16 5 O -0.53 -22.24 16.18 21.96 0.36 -21.88 16 6 C 0.12 4.06 5.76 85.63 0.49 4.55 16 7 N -0.53 -20.10 1.94 -718.53 -1.40 -21.49 16 8 C 0.24 10.30 4.96 85.63 0.42 10.73 16 9 C -0.55 -24.70 9.39 25.60 0.24 -24.45 16 10 H 0.07 3.01 7.81 -2.91 -0.02 2.98 16 11 C 0.03 1.50 5.46 84.65 0.46 1.96 16 12 N -0.91 -45.08 13.29 21.45 0.28 -44.79 16 13 Si 0.96 36.86 29.54 68.60 2.03 38.89 16 14 H -0.28 -10.57 7.11 99.48 0.71 -9.87 16 15 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 16 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 17 C 0.58 22.28 7.56 179.05 1.35 23.64 16 18 S -0.71 -29.37 24.22 -56.49 -1.37 -30.74 16 19 N -0.62 -20.79 5.19 -190.09 -0.99 -21.78 16 20 C 0.11 3.09 5.93 38.12 0.23 3.32 16 21 C -0.08 -1.77 9.96 22.45 0.22 -1.54 16 22 C -0.10 -1.50 10.02 22.21 0.22 -1.28 16 23 C -0.05 -0.88 9.75 22.56 0.22 -0.66 16 24 C -0.04 -1.09 5.73 -21.38 -0.12 -1.21 16 25 C 0.28 8.27 15.32 88.35 1.35 9.63 16 26 N -0.47 -15.51 18.52 18.98 0.35 -15.16 16 27 C -0.03 -1.05 7.57 22.67 0.17 -0.88 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 32 H 0.07 1.67 8.13 -2.39 -0.02 1.65 16 33 H 0.15 4.43 8.07 -2.38 -0.02 4.41 16 34 H 0.15 4.92 6.58 -2.39 -0.02 4.91 16 35 H 0.03 1.56 8.07 -2.39 -0.02 1.55 16 36 H 0.03 1.40 6.30 -2.38 -0.02 1.38 16 37 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 38 H 0.42 14.01 6.52 -92.71 -0.60 13.41 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.12 4.62 6.09 -8.28 -0.05 4.57 16 Total: -1.00 -65.12 384.97 6.20 -58.92 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.44 Total: 28.43 kcal Atomic # 6 Polarization: 33.81 SS G_CDS: 7.03 Total: 40.84 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -1.75 Total: -103.23 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.17 Total: -33.11 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 16 Polarization: -29.37 SS G_CDS: -1.37 Total: -30.74 kcal Total: -65.12 6.20 -58.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197704482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.712 kcal (2) G-P(sol) polarization free energy of solvation -65.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds