Wall clock time and date at job start Wed Apr 1 2020 04:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35907 * 116.99892 * 2 1 4 4 C 1.38751 * 120.05549 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94104 * 180.02562 * 4 3 2 6 6 C 1.38296 * 120.05785 * 359.97028 * 5 4 3 7 7 C 1.38243 * 120.10787 * 0.03171 * 6 5 4 8 8 C 1.38158 * 120.05847 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.02882 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.47587 * 135.83958 * 9 8 7 11 11 C 1.52996 * 109.47438 * 15.83604 * 9 8 7 12 12 N 1.46493 * 109.47687 * 185.00298 * 11 9 8 13 13 C 1.34772 * 120.00433 * 180.02562 * 12 11 9 14 14 O 1.21688 * 120.00116 * 359.97438 * 13 12 11 15 15 C 1.46682 * 120.00234 * 180.02562 * 13 12 11 16 16 C 1.35663 * 126.13232 * 179.97438 * 15 13 12 17 17 N 1.30939 * 114.19745 * 179.97438 * 16 15 13 18 18 C 1.29431 * 117.35801 * 0.02562 * 17 16 15 19 19 S 1.70951 * 110.39453 * 359.71675 * 18 17 16 20 20 N 1.46497 * 109.47226 * 255.83802 * 9 8 7 21 21 C 1.36941 * 119.99856 * 58.59322 * 20 9 8 22 22 H 1.07995 * 120.00114 * 4.71294 * 21 20 9 23 23 C 1.38819 * 120.00013 * 184.70962 * 21 20 9 24 24 N 1.31618 * 120.00014 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99852 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47171 * 90.00399 * 25 23 21 27 27 H 1.48506 * 109.46856 * 210.00085 * 25 23 21 28 28 H 1.48497 * 109.47475 * 329.99816 * 25 23 21 29 29 H 1.08990 * 109.47304 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47038 * 300.00306 * 1 2 3 31 31 H 1.09000 * 109.47133 * 59.99721 * 1 2 3 32 32 H 1.07996 * 120.03286 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97379 * 180.25330 * 5 4 3 34 34 H 1.07999 * 119.94479 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.96884 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47407 * 305.00641 * 11 9 8 37 37 H 1.09002 * 109.47181 * 64.99998 * 11 9 8 38 38 H 0.97001 * 120.00121 * 0.02562 * 12 11 9 39 39 H 1.08004 * 122.90529 * 0.02562 * 16 15 13 40 40 H 1.08009 * 124.80212 * 179.97438 * 18 17 16 41 41 H 0.97000 * 120.00578 * 238.60203 * 20 9 8 42 42 H 0.96996 * 120.00680 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6758 -0.0005 7 6 4.0560 2.5171 -0.0010 8 6 3.4312 1.2849 -0.0006 9 6 4.2537 0.0222 -0.0018 10 1 3.8352 -0.6849 0.7144 11 6 5.6953 0.3522 0.3903 12 7 6.5211 -0.8522 0.2737 13 6 7.8347 -0.8000 0.5706 14 8 8.3349 0.2476 0.9352 15 6 8.6616 -2.0059 0.4534 16 6 9.9891 -2.0943 0.7183 17 7 10.4946 -3.2882 0.5351 18 6 9.6905 -4.2193 0.1330 19 16 8.1072 -3.6011 -0.0497 20 7 4.2357 -0.5711 -1.3412 21 6 4.6888 0.1481 -2.4148 22 1 5.1296 1.1225 -2.2648 23 6 4.5816 -0.3754 -3.6960 24 7 4.0440 -1.5628 -3.8789 25 14 5.2003 0.6054 -5.1604 26 1 6.6256 0.2731 -5.4122 27 1 4.3935 0.2658 -6.3601 28 1 5.0736 2.0568 -4.8734 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.2129 2.3205 0.0005 33 1 1.3341 4.5114 0.0046 34 1 3.7923 4.6381 -0.0005 35 1 5.1345 2.5752 -0.0018 36 1 6.0844 1.1250 -0.2727 37 1 5.7190 0.7107 1.4194 38 1 6.1225 -1.6873 -0.0173 39 1 10.5781 -1.2529 1.0523 40 1 9.9782 -5.2431 -0.0561 41 1 3.9026 -1.4734 -1.4676 42 1 3.9687 -1.9285 -4.7742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198577997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:25 Heat of formation + Delta-G solvation = 23.834642 kcal Electronic energy + Delta-G solvation = -27943.468033 eV Core-core repulsion = 24016.741483 eV Total energy + Delta-G solvation = -3926.726550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.05619 -39.80833 -38.76647 -37.19417 -35.83130 -33.50508 -32.07973 -30.62843 -29.92663 -29.51068 -27.64223 -26.78539 -25.79903 -24.37120 -22.75813 -21.85476 -21.15502 -20.08409 -19.68607 -18.70050 -17.78231 -17.23478 -16.59549 -15.89891 -15.63559 -15.49835 -15.25766 -15.09096 -14.76731 -14.44967 -14.12623 -14.01188 -13.98651 -13.68526 -13.53740 -13.12320 -12.90609 -12.70669 -12.26565 -11.95893 -11.66534 -11.59004 -11.51910 -10.95275 -10.89560 -10.74645 -10.57858 -10.47502 -10.05027 -10.01216 -9.76610 -9.65774 -9.52347 -9.08163 -9.00635 -8.58486 -8.41330 -7.68753 -7.06001 -5.82129 -3.11841 0.28822 1.21739 1.60992 1.78124 1.91663 2.53602 3.37334 3.40677 3.47067 3.48381 3.51836 3.70249 4.21299 4.24845 4.57767 5.04408 5.11031 5.12288 5.15129 5.31376 5.33230 5.40600 5.41846 5.52646 5.62736 5.67178 5.71196 5.84605 5.88117 5.96925 6.04863 6.08313 6.32406 6.44814 6.56417 6.69960 6.82883 6.90869 7.01609 7.23584 7.52927 7.70046 7.84355 7.85579 8.33960 8.45063 9.47828 9.96748 10.33976 11.39329 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009900 B = 0.003773 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.602333 B = 7420.096810 C = 8399.103759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.302 6.302 3 C 0.145 3.855 4 C -0.215 4.215 5 C -0.095 4.095 6 C -0.160 4.160 7 C -0.080 4.080 8 C -0.093 4.093 9 C 0.206 3.794 10 H 0.073 0.927 11 C 0.107 3.893 12 N -0.692 5.692 13 C 0.590 3.410 14 O -0.540 6.540 15 C -0.277 4.277 16 C 0.103 3.897 17 N -0.479 5.479 18 C 0.016 3.984 19 S 0.190 5.810 20 N -0.704 5.704 21 C -0.232 4.232 22 H 0.070 0.930 23 C -0.005 4.005 24 N -0.928 5.928 25 Si 0.897 3.103 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.402 0.598 39 H 0.186 0.814 40 H 0.203 0.797 41 H 0.388 0.612 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 -1.670 10.844 11.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.214 6.214 3 C 0.100 3.900 4 C -0.234 4.234 5 C -0.113 4.113 6 C -0.179 4.179 7 C -0.099 4.099 8 C -0.097 4.097 9 C 0.095 3.905 10 H 0.091 0.909 11 C -0.019 4.019 12 N -0.341 5.341 13 C 0.374 3.626 14 O -0.420 6.420 15 C -0.402 4.402 16 C -0.055 4.055 17 N -0.192 5.192 18 C -0.279 4.279 19 S 0.444 5.556 20 N -0.343 5.343 21 C -0.363 4.363 22 H 0.088 0.912 23 C -0.201 4.201 24 N -0.576 5.576 25 Si 0.729 3.271 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.207 1.207 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.238 0.762 39 H 0.203 0.797 40 H 0.219 0.781 41 H 0.222 0.778 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.034 -1.682 10.702 10.882 hybrid contribution 0.170 0.768 -1.192 1.428 sum -0.863 -0.914 9.509 9.592 Atomic orbital electron populations 1.22944 0.79568 1.03375 1.00554 1.86148 1.20210 1.26755 1.88333 1.18736 0.91709 0.83905 0.95693 1.21087 0.99369 0.92632 1.10322 1.20743 0.94628 0.96486 0.99482 1.20944 0.93854 0.98136 1.04935 1.21017 1.00060 0.91239 0.97602 1.19825 0.90863 0.96554 1.02454 1.19162 0.90245 0.91339 0.89751 0.90926 1.22059 0.92853 0.86869 1.00094 1.45637 1.07731 1.14408 1.66360 1.16662 0.81786 0.86005 0.78109 1.90800 1.72778 1.29941 1.48442 1.25973 0.99637 0.98996 1.15598 1.22187 0.90982 0.94875 0.97413 1.66255 1.37053 1.00321 1.15585 1.28773 0.93343 1.03936 1.01839 1.84299 1.12210 1.00751 1.58319 1.42368 1.75097 1.16093 1.00733 1.19082 1.31583 1.00210 0.85418 0.91215 1.24671 1.01251 0.97022 0.97183 1.69645 1.49805 1.16924 1.21184 0.86336 0.78146 0.79629 0.83020 1.21765 1.21846 1.20717 0.88723 0.93478 0.93042 0.86282 0.86758 0.86654 0.85406 0.90741 0.92134 0.76250 0.79672 0.78060 0.77789 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.21 9.81 -19.45 -0.19 -5.40 16 3 C 0.15 2.58 6.66 -39.22 -0.26 2.32 16 4 C -0.22 -3.34 9.04 -39.44 -0.36 -3.69 16 5 C -0.09 -1.39 10.04 -39.60 -0.40 -1.79 16 6 C -0.16 -2.46 10.04 -39.56 -0.40 -2.86 16 7 C -0.08 -1.37 8.95 -39.61 -0.35 -1.73 16 8 C -0.09 -1.71 4.75 -104.48 -0.50 -2.21 16 9 C 0.21 3.81 2.69 -69.09 -0.19 3.62 16 10 H 0.07 1.25 7.98 -51.93 -0.41 0.84 16 11 C 0.11 1.89 3.99 -4.05 -0.02 1.87 16 12 N -0.69 -11.94 5.38 -61.62 -0.33 -12.27 16 13 C 0.59 10.44 7.79 -12.85 -0.10 10.34 16 14 O -0.54 -10.87 16.87 5.20 0.09 -10.78 16 15 C -0.28 -4.19 6.48 -37.10 -0.24 -4.44 16 16 C 0.10 1.47 11.09 -18.85 -0.21 1.26 16 17 N -0.48 -6.44 10.51 -15.37 -0.16 -6.60 16 18 C 0.02 0.17 12.22 51.75 0.63 0.80 16 19 S 0.19 2.30 22.35 -107.50 -2.40 -0.10 16 20 N -0.70 -15.69 4.72 -54.55 -0.26 -15.95 16 21 C -0.23 -5.92 8.83 -15.05 -0.13 -6.05 16 22 H 0.07 1.81 7.09 -52.49 -0.37 1.44 16 23 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 24 N -0.93 -26.28 13.06 55.49 0.72 -25.56 16 25 Si 0.90 22.19 29.55 -169.99 -5.02 17.16 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 32 H 0.12 1.55 6.30 -52.49 -0.33 1.22 16 33 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 2.11 5.83 -52.49 -0.31 1.80 16 36 H 0.07 1.46 5.77 -51.93 -0.30 1.16 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 6.69 7.32 -40.82 -0.30 6.39 16 39 H 0.19 2.46 8.06 -52.48 -0.42 2.04 16 40 H 0.20 1.39 8.06 -52.48 -0.42 0.96 16 41 H 0.39 9.27 8.04 -40.82 -0.33 8.94 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -32.10 371.97 -8.39 -40.49 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -4.82 Total: 14.78 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.62 Total: -1.39 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.03 Total: -60.37 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.10 Total: -16.18 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.40 Total: -0.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.10 -8.39 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198577997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.326 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds