Wall clock time and date at job start Wed Apr 1 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46613 * 145.00276 * 9 8 7 11 11 C 1.52997 * 109.47072 * 264.99471 * 9 8 7 12 12 N 1.46500 * 109.47006 * 175.00174 * 11 9 8 13 13 C 1.34782 * 119.99905 * 180.02562 * 12 11 9 14 14 O 1.21627 * 119.99835 * 0.02562 * 13 12 11 15 15 C 1.47104 * 119.99950 * 179.97438 * 13 12 11 16 16 C 1.38390 * 127.99449 * 179.70171 * 15 13 12 17 17 C 1.37579 * 111.25785 * 179.88868 * 16 15 13 18 18 N 1.29549 * 117.95104 * 0.43822 * 17 16 15 19 19 S 1.56308 * 110.38080 * 359.74690 * 18 17 16 20 20 N 1.46490 * 109.47427 * 25.00087 * 9 8 7 21 21 C 1.36946 * 120.00091 * 84.99917 * 20 9 8 22 22 H 1.07993 * 119.99950 * 359.97438 * 21 20 9 23 23 C 1.38818 * 119.99882 * 180.02562 * 21 20 9 24 24 N 1.31618 * 119.99779 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99853 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47337 * 89.99958 * 25 23 21 27 27 H 1.48500 * 109.47147 * 209.99896 * 25 23 21 28 28 H 1.48498 * 109.46928 * 329.99947 * 25 23 21 29 29 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 31 31 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 32 32 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 33 33 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 34 34 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 36 36 H 1.08992 * 109.47467 * 295.00629 * 11 9 8 37 37 H 1.09009 * 109.46662 * 55.00615 * 11 9 8 38 38 H 0.96999 * 120.00114 * 0.02562 * 12 11 9 39 39 H 1.08000 * 124.36999 * 0.03325 * 16 15 13 40 40 H 1.08002 * 121.02112 * 180.19218 * 17 16 15 41 41 H 0.96999 * 120.00485 * 264.99635 * 20 9 8 42 42 H 0.97000 * 119.99459 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 3.7463 -0.7414 0.5922 11 6 4.4277 -0.4750 -1.4340 12 7 5.3250 -1.6330 -1.4447 13 6 5.6262 -2.2415 -2.6090 14 8 5.1534 -1.8288 -3.6509 15 6 6.5277 -3.4039 -2.6198 16 6 6.9408 -4.1515 -3.7087 17 6 7.7897 -5.1640 -3.3254 18 7 8.0657 -5.2806 -2.0650 19 16 7.3288 -4.1748 -1.2419 20 7 5.5687 0.2966 0.5869 21 6 5.7372 0.2519 1.9452 22 1 4.9006 0.0147 2.5855 23 6 6.9832 0.5126 2.4989 24 7 8.0026 0.8022 1.7185 25 14 7.2132 0.4510 4.3517 26 1 7.5965 -0.9251 4.7574 27 1 8.2834 1.4005 4.7495 28 1 5.9425 0.8285 5.0210 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2129 2.3204 -0.0009 33 1 1.3342 4.5114 0.0020 34 1 3.7924 4.6380 -0.0014 35 1 5.1345 2.5751 0.0006 36 1 3.4577 -0.7633 -1.8387 37 1 4.8543 0.3208 -2.0447 38 1 5.7024 -1.9619 -0.6138 39 1 6.6379 -3.9628 -4.7281 40 1 8.2099 -5.8432 -4.0524 41 1 6.3202 0.5100 0.0118 42 1 8.8732 0.9847 2.1055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198752165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:10 Heat of formation + Delta-G solvation = 16.175831 kcal Electronic energy + Delta-G solvation = -27679.546915 eV Core-core repulsion = 23752.488254 eV Total energy + Delta-G solvation = -3927.058661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.02109 -39.61664 -38.71146 -37.22970 -35.86925 -33.66359 -32.16013 -31.41535 -29.76237 -29.70799 -27.93250 -27.03924 -25.77856 -23.80975 -23.00269 -21.62407 -21.56259 -20.23800 -19.77992 -18.48491 -17.71843 -17.38021 -16.79342 -15.96119 -15.86227 -15.48550 -15.25684 -15.17930 -14.85495 -14.52799 -14.23789 -13.94256 -13.63797 -13.60721 -13.29698 -13.21541 -12.90139 -12.86164 -12.41105 -12.10204 -11.75014 -11.34240 -11.23743 -10.99601 -10.90492 -10.83353 -10.75500 -10.70325 -10.51832 -10.15216 -9.91938 -9.77913 -9.69007 -9.09189 -8.86618 -8.71924 -8.36558 -7.75963 -7.14705 -5.87063 -3.18793 0.34341 1.33559 1.77932 1.86570 1.90732 2.22456 3.26146 3.34354 3.38772 3.45650 3.46003 3.54449 4.21022 4.50215 4.78091 4.96331 5.03776 5.13049 5.14153 5.21614 5.25412 5.46235 5.48189 5.48682 5.54465 5.62977 5.68220 5.79399 5.82894 5.90670 5.93549 6.22387 6.27289 6.39649 6.46834 6.55174 6.65532 6.75592 6.89610 7.13873 7.30580 7.65823 7.72003 7.75055 8.29122 8.34654 9.42433 9.91555 10.28930 11.34118 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.004158 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.099831 B = 6732.158611 C = 9153.188670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.122 3.878 4 C -0.219 4.219 5 C -0.094 4.094 6 C -0.163 4.163 7 C -0.043 4.043 8 C -0.115 4.115 9 C 0.207 3.793 10 H 0.072 0.928 11 C 0.124 3.876 12 N -0.702 5.702 13 C 0.592 3.408 14 O -0.537 6.537 15 C -0.264 4.264 16 C -0.119 4.119 17 C 0.052 3.948 18 N -0.527 5.527 19 S 0.446 5.554 20 N -0.717 5.717 21 C -0.243 4.243 22 H 0.072 0.928 23 C -0.004 4.004 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.173 0.827 40 H 0.180 0.820 41 H 0.387 0.613 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 -4.575 -7.570 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.077 3.923 4 C -0.237 4.237 5 C -0.112 4.112 6 C -0.182 4.182 7 C -0.062 4.062 8 C -0.119 4.119 9 C 0.096 3.904 10 H 0.090 0.910 11 C 0.000 4.000 12 N -0.354 5.354 13 C 0.376 3.624 14 O -0.415 6.415 15 C -0.398 4.398 16 C -0.155 4.155 17 C -0.140 4.140 18 N -0.358 5.358 19 S 0.601 5.399 20 N -0.358 5.358 21 C -0.374 4.374 22 H 0.090 0.910 23 C -0.201 4.201 24 N -0.575 5.575 25 Si 0.734 3.266 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.246 0.754 39 H 0.190 0.810 40 H 0.197 0.803 41 H 0.221 0.779 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.079 -5.008 -6.074 12.017 hybrid contribution -0.069 0.440 -0.505 0.673 sum -9.148 -4.569 -6.579 12.159 Atomic orbital electron populations 1.22961 0.79362 1.03356 1.00881 1.86082 1.20493 1.27188 1.88930 1.18939 0.91956 0.83814 0.97588 1.21053 0.99225 0.92620 1.10846 1.20790 0.94722 0.96461 0.99270 1.21068 0.93725 0.98538 1.04838 1.21034 1.01124 0.90382 0.93626 1.20375 0.89936 0.98153 1.03478 1.19258 0.87810 0.92101 0.91232 0.91000 1.21639 0.93235 0.87009 0.98142 1.45846 1.48676 1.31864 1.08989 1.16711 0.80079 0.81277 0.84285 1.90788 1.53572 1.65220 1.31927 1.26969 1.07829 1.04188 1.00829 1.22067 0.97940 0.94427 1.01016 1.22220 0.99678 1.00215 0.91862 1.72161 1.26882 1.25562 1.11201 1.82154 1.30649 1.14361 1.12748 1.42498 1.04808 1.83503 1.04957 1.19183 0.94689 1.40692 0.82786 0.91047 1.24703 0.95856 1.01965 0.97558 1.69650 1.00652 1.53582 1.33620 0.86254 0.77346 0.77382 0.85579 1.21607 1.21826 1.20774 0.88715 0.93083 0.93089 0.86360 0.86767 0.86565 0.84298 0.90924 0.91359 0.75357 0.80994 0.80312 0.77868 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.71 9.63 -19.41 -0.19 -4.89 16 3 C 0.12 2.00 6.66 -39.22 -0.26 1.74 16 4 C -0.22 -3.14 9.04 -39.43 -0.36 -3.50 16 5 C -0.09 -1.34 10.04 -39.60 -0.40 -1.73 16 6 C -0.16 -2.57 10.04 -39.56 -0.40 -2.97 16 7 C -0.04 -0.79 9.32 -39.61 -0.37 -1.16 16 8 C -0.12 -2.08 5.04 -104.47 -0.53 -2.61 16 9 C 0.21 3.85 2.38 -69.09 -0.16 3.69 16 10 H 0.07 1.39 7.63 -51.93 -0.40 1.00 16 11 C 0.12 2.12 5.21 -4.04 -0.02 2.10 16 12 N -0.70 -11.66 5.38 -61.49 -0.33 -11.99 16 13 C 0.59 9.93 7.80 -12.66 -0.10 9.83 16 14 O -0.54 -10.30 16.96 5.25 0.09 -10.21 16 15 C -0.26 -3.81 6.76 -35.93 -0.24 -4.05 16 16 C -0.12 -1.44 10.40 -39.77 -0.41 -1.85 16 17 C 0.05 0.59 11.14 -18.75 -0.21 0.38 16 18 N -0.53 -7.16 11.29 21.63 0.24 -6.92 16 19 S 0.45 6.08 22.81 -107.50 -2.45 3.63 16 20 N -0.72 -15.68 3.30 -54.56 -0.18 -15.86 16 21 C -0.24 -6.05 9.92 -15.05 -0.15 -6.20 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 23 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 24 N -0.93 -25.62 13.06 55.49 0.72 -24.90 16 25 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 33 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.14 2.78 7.26 -52.49 -0.38 2.39 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.41 6.80 7.52 -40.82 -0.31 6.50 16 39 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.39 9.10 7.80 -40.82 -0.32 8.78 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -30.24 377.01 -9.18 -39.42 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.71 Total: -5.24 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.46 Total: -59.67 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.10 Total: -15.11 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -2.45 Total: 3.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.24 -9.18 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198752165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.598 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds