Wall clock time and date at job start Wed Apr 1 2020 04:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46613 * 145.00276 * 9 8 7 11 11 C 1.52997 * 109.47072 * 264.99471 * 9 8 7 12 12 N 1.46500 * 109.47006 * 175.00174 * 11 9 8 13 13 C 1.34782 * 119.99905 * 180.02562 * 12 11 9 14 14 O 1.21627 * 119.99835 * 0.02562 * 13 12 11 15 15 C 1.47104 * 119.99950 * 179.97438 * 13 12 11 16 16 C 1.38390 * 127.99449 * 179.70171 * 15 13 12 17 17 C 1.37579 * 111.25785 * 179.88868 * 16 15 13 18 18 N 1.29549 * 117.95104 * 0.43822 * 17 16 15 19 19 S 1.56308 * 110.38080 * 359.74690 * 18 17 16 20 20 N 1.46490 * 109.47427 * 25.00087 * 9 8 7 21 21 C 1.36946 * 120.00091 * 84.99917 * 20 9 8 22 22 H 1.07993 * 119.99950 * 359.97438 * 21 20 9 23 23 C 1.38818 * 119.99882 * 180.02562 * 21 20 9 24 24 N 1.31618 * 119.99779 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99853 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47337 * 89.99958 * 25 23 21 27 27 H 1.48500 * 109.47147 * 209.99896 * 25 23 21 28 28 H 1.48498 * 109.46928 * 329.99947 * 25 23 21 29 29 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 31 31 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 32 32 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 33 33 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 34 34 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 36 36 H 1.08992 * 109.47467 * 295.00629 * 11 9 8 37 37 H 1.09009 * 109.46662 * 55.00615 * 11 9 8 38 38 H 0.96999 * 120.00114 * 0.02562 * 12 11 9 39 39 H 1.08000 * 124.36999 * 0.03325 * 16 15 13 40 40 H 1.08002 * 121.02112 * 180.19218 * 17 16 15 41 41 H 0.96999 * 120.00485 * 264.99635 * 20 9 8 42 42 H 0.97000 * 119.99459 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 3.7463 -0.7414 0.5922 11 6 4.4277 -0.4750 -1.4340 12 7 5.3250 -1.6330 -1.4447 13 6 5.6262 -2.2415 -2.6090 14 8 5.1534 -1.8288 -3.6509 15 6 6.5277 -3.4039 -2.6198 16 6 6.9408 -4.1515 -3.7087 17 6 7.7897 -5.1640 -3.3254 18 7 8.0657 -5.2806 -2.0650 19 16 7.3288 -4.1748 -1.2419 20 7 5.5687 0.2966 0.5869 21 6 5.7372 0.2519 1.9452 22 1 4.9006 0.0147 2.5855 23 6 6.9832 0.5126 2.4989 24 7 8.0026 0.8022 1.7185 25 14 7.2132 0.4510 4.3517 26 1 7.5965 -0.9251 4.7574 27 1 8.2834 1.4005 4.7495 28 1 5.9425 0.8285 5.0210 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2129 2.3204 -0.0009 33 1 1.3342 4.5114 0.0020 34 1 3.7924 4.6380 -0.0014 35 1 5.1345 2.5751 0.0006 36 1 3.4577 -0.7633 -1.8387 37 1 4.8543 0.3208 -2.0447 38 1 5.7024 -1.9619 -0.6138 39 1 6.6379 -3.9628 -4.7281 40 1 8.2099 -5.8432 -4.0524 41 1 6.3202 0.5100 0.0118 42 1 8.8732 0.9847 2.1055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198752165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:09 Heat of formation + Delta-G solvation = -3.200305 kcal Electronic energy + Delta-G solvation = -27680.387127 eV Core-core repulsion = 23752.488254 eV Total energy + Delta-G solvation = -3927.898874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26419 -40.81294 -39.85064 -38.46613 -37.30920 -35.28232 -33.77399 -32.54019 -31.32160 -30.92444 -29.33378 -27.98182 -26.96707 -25.55451 -24.36773 -22.83011 -22.74604 -21.62736 -20.98731 -19.68250 -19.28003 -18.75732 -17.98421 -17.25037 -17.21611 -16.60278 -16.51825 -16.48096 -16.13091 -15.95853 -15.54062 -15.17641 -15.11449 -14.96152 -14.62764 -14.37416 -14.22670 -14.10857 -13.78924 -13.45845 -12.87593 -12.83363 -12.72438 -12.53603 -12.34308 -12.22928 -12.04424 -11.89953 -11.82694 -11.71974 -11.59375 -11.28330 -10.95592 -10.80858 -10.16787 -9.83973 -9.65547 -9.06626 -8.93303 -7.88874 -5.18450 -0.74106 0.26472 0.53239 0.62955 0.89036 1.23878 1.50437 1.52186 1.58821 1.98264 2.06176 2.51717 2.58790 2.95417 3.44290 3.61382 3.77678 3.98882 4.01297 4.09250 4.12630 4.17823 4.31658 4.40594 4.41912 4.47672 4.60316 4.64588 4.71551 4.78532 4.80138 4.90104 4.93360 5.05212 5.21679 5.30995 5.48030 5.50246 5.58943 5.65793 5.85054 6.03808 6.30846 6.37766 6.60398 6.99032 7.39712 8.05223 8.34233 9.32772 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.004158 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.099831 B = 6732.158611 C = 9153.188670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.085 4.085 6 C -0.172 4.172 7 C -0.066 4.066 8 C -0.141 4.141 9 C 0.216 3.784 10 H 0.063 0.937 11 C 0.136 3.864 12 N -0.703 5.703 13 C 0.594 3.406 14 O -0.565 6.565 15 C -0.290 4.290 16 C -0.101 4.101 17 C 0.064 3.936 18 N -0.540 5.540 19 S 0.427 5.573 20 N -0.718 5.718 21 C -0.228 4.228 22 H 0.069 0.931 23 C -0.057 4.057 24 N -0.959 5.959 25 Si 0.957 3.043 26 H -0.287 1.287 27 H -0.301 1.301 28 H -0.277 1.277 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.409 0.591 39 H 0.193 0.807 40 H 0.222 0.778 41 H 0.377 0.623 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 -4.978 -8.143 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.072 3.928 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.190 4.190 7 C -0.084 4.084 8 C -0.145 4.145 9 C 0.107 3.893 10 H 0.081 0.919 11 C 0.012 3.988 12 N -0.353 5.353 13 C 0.380 3.620 14 O -0.446 6.446 15 C -0.423 4.423 16 C -0.137 4.137 17 C -0.128 4.128 18 N -0.370 5.370 19 S 0.583 5.417 20 N -0.358 5.358 21 C -0.360 4.360 22 H 0.087 0.913 23 C -0.250 4.250 24 N -0.609 5.609 25 Si 0.788 3.212 26 H -0.214 1.214 27 H -0.228 1.228 28 H -0.203 1.203 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.246 0.754 39 H 0.210 0.790 40 H 0.238 0.762 41 H 0.210 0.790 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.206 -5.427 -6.624 14.103 hybrid contribution 0.436 0.516 -0.437 0.804 sum -10.770 -4.911 -7.061 13.783 Atomic orbital electron populations 1.23304 0.76814 1.05237 1.02140 1.86056 1.23148 1.26775 1.88729 1.18993 0.91433 0.85153 0.97248 1.21445 1.00869 0.91781 1.09145 1.21209 0.94089 0.97948 0.97087 1.21279 0.94789 0.98209 1.04725 1.20887 0.99950 0.91785 0.95810 1.20191 0.91165 0.97285 1.05859 1.19208 0.86188 0.92477 0.91466 0.91887 1.21461 0.93474 0.86851 0.97005 1.45846 1.48597 1.31687 1.09184 1.16968 0.79844 0.81544 0.83626 1.90760 1.54893 1.66323 1.32614 1.26805 1.08894 1.04433 1.02191 1.22446 0.96590 0.93359 1.01331 1.22792 0.98356 0.99936 0.91746 1.72292 1.27091 1.25393 1.12259 1.82203 1.31367 1.15000 1.13151 1.42468 1.05905 1.83510 1.03912 1.19362 0.94224 1.38350 0.84044 0.91293 1.25274 0.95934 1.03144 1.00657 1.69782 1.00695 1.55716 1.34707 0.85386 0.76888 0.76985 0.81942 1.21391 1.22752 1.20258 0.86764 0.91939 0.91526 0.83009 0.83076 0.85075 0.87332 0.90300 0.92557 0.75416 0.78968 0.76201 0.79041 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -9.56 9.63 -92.39 -0.89 -10.45 16 3 C 0.12 3.70 6.66 22.51 0.15 3.85 16 4 C -0.21 -5.52 9.04 22.37 0.20 -5.32 16 5 C -0.09 -2.17 10.04 22.26 0.22 -1.95 16 6 C -0.17 -5.27 10.04 22.28 0.22 -5.05 16 7 C -0.07 -2.47 9.32 22.25 0.21 -2.26 16 8 C -0.14 -5.19 5.04 -19.77 -0.10 -5.29 16 9 C 0.22 8.35 2.38 44.25 0.11 8.45 16 10 H 0.06 2.53 7.63 -2.38 -0.02 2.51 16 11 C 0.14 4.86 5.21 86.38 0.45 5.31 16 12 N -0.70 -24.27 5.38 -466.69 -2.51 -26.78 16 13 C 0.59 20.34 7.80 86.57 0.68 21.02 16 14 O -0.57 -21.97 16.96 -4.12 -0.07 -22.04 16 15 C -0.29 -8.31 6.76 24.63 0.17 -8.14 16 16 C -0.10 -2.26 10.40 22.15 0.23 -2.03 16 17 C 0.06 1.28 11.14 84.87 0.95 2.23 16 18 N -0.54 -13.96 11.29 -85.49 -0.97 -14.93 16 19 S 0.43 11.71 22.81 -56.49 -1.29 10.43 16 20 N -0.72 -32.87 3.30 -326.52 -1.08 -33.94 16 21 C -0.23 -11.68 9.92 84.03 0.83 -10.85 16 22 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 23 C -0.06 -3.05 5.50 84.86 0.47 -2.59 16 24 N -0.96 -54.84 13.06 21.65 0.28 -54.56 16 25 Si 0.96 44.41 29.55 68.60 2.03 46.44 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 29 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 0.98 7.66 -2.38 -0.02 0.96 16 31 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 32 H 0.15 2.85 6.30 -2.91 -0.02 2.83 16 33 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 35 H 0.11 4.66 7.26 -2.91 -0.02 4.63 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.41 14.28 7.52 -92.71 -0.70 13.58 16 39 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.22 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.38 18.76 7.80 -92.71 -0.72 18.04 16 42 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -66.91 377.01 1.06 -65.85 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.34 Total: 41.15 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.89 Total: -1.16 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -4.27 Total: -130.21 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.96 Total: -32.49 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 11.71 SS G_CDS: -1.29 Total: 10.43 kcal Total: -66.91 1.06 -65.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198752165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.652 kcal (2) G-P(sol) polarization free energy of solvation -66.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds