Wall clock time and date at job start Wed Apr 1 2020 04:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42103 * 110.54408 * 2 1 4 4 O 1.42098 * 110.54652 * 223.25251 * 2 1 3 5 5 N 1.65596 * 104.44972 * 111.62528 * 2 1 3 6 6 C 1.34968 * 126.03780 * 269.99657 * 5 2 1 7 7 C 1.35147 * 107.77668 * 179.97438 * 6 5 2 8 8 C 1.40176 * 107.91432 * 0.02562 * 7 6 5 9 9 N 1.30719 * 108.12354 * 359.97438 * 8 7 6 10 10 C 1.51188 * 107.95874 * 179.97438 * 8 7 6 11 11 N 1.48021 * 105.74455 * 342.39279 * 10 8 7 12 12 C 1.46899 * 110.99923 * 147.42243 * 11 10 8 13 13 C 1.50707 * 109.47329 * 69.87007 * 12 11 10 14 14 C 1.37639 * 120.12696 * 260.00305 * 13 12 11 15 15 C 1.38615 * 120.24485 * 179.74616 * 14 13 12 16 16 C 1.38659 * 120.50031 * 0.25596 * 15 14 13 17 17 C 1.37595 * 120.24970 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.12475 * 80.27295 * 13 12 11 19 19 C 1.41392 * 120.24717 * 0.02562 * 18 13 12 20 20 H 1.07998 * 120.00078 * 330.07584 * 19 18 13 21 21 C 1.39946 * 120.00306 * 150.07473 * 19 18 13 22 22 N 1.30818 * 120.00194 * 162.04784 * 21 19 18 23 23 Si 1.86804 * 119.99667 * 342.04818 * 21 19 18 24 24 H 1.48500 * 109.46965 * 95.39321 * 23 21 19 25 25 H 1.48497 * 109.46929 * 215.39142 * 23 21 19 26 26 H 1.48498 * 109.47070 * 335.39263 * 23 21 19 27 27 C 1.48020 * 104.15451 * 27.90647 * 11 10 8 28 28 H 1.08999 * 109.47142 * 308.37678 * 1 2 3 29 29 H 1.09002 * 109.46928 * 68.37348 * 1 2 3 30 30 H 1.09002 * 109.46949 * 188.36990 * 1 2 3 31 31 H 1.07996 * 126.11382 * 0.02562 * 6 5 2 32 32 H 1.08994 * 110.19791 * 223.32332 * 10 8 7 33 33 H 1.08994 * 110.19307 * 101.45531 * 10 8 7 34 34 H 1.09004 * 109.46912 * 309.87053 * 12 11 10 35 35 H 1.09003 * 109.47631 * 189.87175 * 12 11 10 36 36 H 1.08001 * 119.87435 * 0.02562 * 14 13 12 37 37 H 1.08003 * 119.74514 * 180.23160 * 15 14 13 38 38 H 1.08001 * 119.87306 * 179.97438 * 16 15 14 39 39 H 1.08000 * 120.12448 * 180.02562 * 17 16 15 40 40 H 0.97005 * 120.00228 * 179.97438 * 22 21 19 41 41 H 1.09001 * 110.19953 * 91.16638 * 27 11 10 42 42 H 1.09003 * 110.20037 * 213.03325 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 2.4254 0.1402 2.6077 7 6 2.7451 -0.7115 3.6071 8 6 2.7431 -2.0116 3.0829 9 7 2.4326 -1.9383 1.8152 10 6 3.1012 -2.9652 4.2000 11 7 3.7200 -2.1327 5.2559 12 6 3.4242 -2.6699 6.5908 13 6 4.1694 -3.9650 6.7876 14 6 3.5191 -5.1675 6.6274 15 6 4.2035 -6.3601 6.8027 16 6 5.5469 -6.3567 7.1459 17 6 6.2157 -5.1664 7.3169 18 6 5.5311 -3.9494 7.1414 19 6 6.2079 -2.7201 7.3148 20 1 5.9018 -1.8510 6.7515 21 6 7.2744 -2.6296 8.2164 22 7 8.1170 -1.6322 8.1349 23 14 7.4947 -3.9329 9.5363 24 1 8.4570 -4.9598 9.0622 25 1 8.0160 -3.3003 10.7745 26 1 6.1863 -4.5748 9.8214 27 6 3.1045 -0.7991 5.0725 28 1 -0.3633 0.6380 0.8056 29 1 -0.3633 0.3788 -0.9553 30 1 -0.3633 -1.0167 0.1496 31 1 2.3425 1.2140 2.6887 32 1 3.8118 -3.7114 3.8445 33 1 2.2036 -3.4514 4.5819 34 1 2.3528 -2.8499 6.6807 35 1 3.7369 -1.9520 7.3490 36 1 2.4729 -5.1818 6.3597 37 1 3.6862 -7.2990 6.6713 38 1 6.0702 -7.2919 7.2804 39 1 7.2621 -5.1661 7.5838 40 1 8.8560 -1.5692 8.7600 41 1 2.2077 -0.7109 5.6858 42 1 3.8173 -0.0165 5.3326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235525610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:49 Heat of formation + Delta-G solvation = 64.331612 kcal Electronic energy + Delta-G solvation = -27640.635820 eV Core-core repulsion = 23715.665350 eV Total energy + Delta-G solvation = -3924.970470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88000 -38.51185 -37.73256 -37.08191 -36.55421 -33.56360 -32.56442 -31.26813 -30.38112 -30.13709 -29.67454 -27.58079 -26.32949 -24.87494 -22.78967 -21.36046 -20.61653 -20.42917 -19.60502 -19.46819 -18.34309 -17.29979 -17.13138 -16.20102 -15.87647 -15.55059 -15.41761 -14.76371 -14.66756 -14.11144 -14.04805 -13.78810 -13.72716 -13.54529 -13.44215 -13.05653 -12.80786 -12.67161 -12.66664 -12.51690 -12.28006 -12.07470 -11.92875 -11.71149 -11.63655 -11.52269 -10.98471 -10.78061 -10.68832 -10.63738 -10.26263 -9.96350 -9.68246 -9.47658 -9.11604 -9.03660 -8.02547 -7.62925 -7.50784 -6.89893 -4.42483 -0.59199 1.23351 1.75906 2.48530 2.54955 2.70280 3.14350 3.14718 3.22964 3.29078 3.34311 3.77846 4.00725 4.14889 4.27487 4.31456 4.53321 4.58771 4.65148 5.07795 5.23822 5.41950 5.49516 5.54317 5.58512 5.68054 5.80301 5.92926 6.02433 6.06659 6.09738 6.19709 6.31201 6.32845 6.62178 6.68840 6.94766 7.01123 7.20385 7.23869 7.34012 7.47322 7.68554 7.76845 7.96708 8.16875 8.47791 8.73442 8.88818 10.11261 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.002653 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.144990 B =10552.809018 C =11332.634891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.616 3.384 3 O -0.931 6.931 4 O -0.914 6.914 5 N -0.743 5.743 6 C 0.080 3.920 7 C -0.218 4.218 8 C 0.094 3.906 9 N -0.232 5.232 10 C 0.123 3.877 11 N -0.482 5.482 12 C 0.114 3.886 13 C -0.186 4.186 14 C -0.072 4.072 15 C -0.249 4.249 16 C -0.077 4.077 17 C -0.238 4.238 18 C 0.112 3.888 19 C -0.433 4.433 20 H 0.106 0.894 21 C 0.083 3.917 22 N -0.805 5.805 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.293 1.293 26 H -0.245 1.245 27 C 0.107 3.893 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.195 0.805 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.283 0.717 41 H 0.060 0.940 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.691 4.797 -8.477 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.711 3.289 3 O -0.921 6.921 4 O -0.904 6.904 5 N -0.634 5.634 6 C -0.057 4.057 7 C -0.229 4.229 8 C -0.082 4.082 9 N -0.051 5.051 10 C -0.007 4.007 11 N -0.206 5.206 12 C -0.012 4.012 13 C -0.188 4.188 14 C -0.091 4.091 15 C -0.269 4.269 16 C -0.095 4.095 17 C -0.257 4.257 18 C 0.108 3.892 19 C -0.462 4.462 20 H 0.124 0.876 21 C -0.136 4.136 22 N -0.429 5.429 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.221 1.221 26 H -0.168 1.168 27 C -0.022 4.022 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.212 0.788 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.519 4.768 -10.315 18.437 hybrid contribution -0.964 -0.150 1.539 1.823 sum -15.483 4.618 -8.776 18.387 Atomic orbital electron populations 1.30422 1.25580 1.12717 1.12265 1.05362 0.78310 0.73956 0.71298 1.93695 1.78077 1.36230 1.84052 1.93673 1.77232 1.60903 1.58632 1.58534 1.66038 1.12202 1.26615 1.21470 1.00764 0.98398 0.85042 1.21583 1.09361 0.93209 0.98792 1.23942 0.94161 0.98284 0.91765 1.77153 1.22867 0.91571 1.13536 1.21241 0.99274 0.93699 0.86455 1.65484 1.51682 1.00068 1.03340 1.20953 0.95334 0.96091 0.88840 1.19355 0.94151 0.91865 1.13432 1.20479 0.97221 0.92693 0.98707 1.20304 0.95167 0.96188 1.15207 1.20608 0.94440 0.96407 0.98092 1.21054 0.98756 0.92986 1.12909 1.17491 0.90439 0.92555 0.88697 1.19655 1.09646 0.97303 1.19561 0.87631 1.26206 0.93136 0.95786 0.98437 1.69711 1.10369 1.29850 1.32980 0.86398 0.80728 0.80405 0.79120 1.19878 1.22113 1.16781 1.21131 0.98347 0.94600 0.88140 0.84770 0.84218 0.84402 0.78827 0.87625 0.90856 0.95411 0.89160 0.89274 0.89172 0.89176 0.88396 0.90622 0.92218 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.98 10.99 101.05 1.11 -1.87 16 2 S 2.62 25.13 6.35 -107.50 -0.68 24.45 16 3 O -0.93 -10.76 17.54 -57.54 -1.01 -11.77 16 4 O -0.91 -12.54 17.91 -57.54 -1.03 -13.57 16 5 N -0.74 -9.07 3.92 30.42 0.12 -8.95 16 6 C 0.08 0.91 11.00 -17.27 -0.19 0.72 16 7 C -0.22 -2.97 7.01 -104.78 -0.73 -3.70 16 8 C 0.09 1.43 8.24 -82.10 -0.68 0.75 16 9 N -0.23 -3.52 12.38 33.84 0.42 -3.10 16 10 C 0.12 1.91 5.90 -4.12 -0.02 1.89 16 11 N -0.48 -8.16 5.18 -236.43 -1.23 -9.38 16 12 C 0.11 1.99 3.99 -4.97 -0.02 1.97 16 13 C -0.19 -3.85 5.01 -103.91 -0.52 -4.37 16 14 C -0.07 -1.39 9.44 -39.66 -0.37 -1.76 16 15 C -0.25 -4.96 10.05 -39.29 -0.39 -5.35 16 16 C -0.08 -1.63 10.02 -39.66 -0.40 -2.03 16 17 C -0.24 -5.59 7.16 -38.88 -0.28 -5.87 16 18 C 0.11 2.66 5.10 -106.83 -0.54 2.11 16 19 C -0.43 -10.97 8.61 -37.74 -0.32 -11.30 16 20 H 0.11 2.79 7.17 -52.49 -0.38 2.42 16 21 C 0.08 2.10 5.41 -17.34 -0.09 2.01 16 22 N -0.81 -20.88 13.93 55.55 0.77 -20.10 16 23 Si 0.91 20.28 24.52 -169.99 -4.17 16.12 16 24 H -0.27 -6.04 6.71 56.52 0.38 -5.66 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.24 -5.58 6.86 56.52 0.39 -5.19 16 27 C 0.11 1.47 6.59 -4.14 -0.03 1.45 16 28 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.14 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.14 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.19 1.47 8.05 -52.49 -0.42 1.05 16 32 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 33 H 0.07 1.01 7.61 -51.93 -0.40 0.61 16 34 H 0.03 0.42 7.68 -51.93 -0.40 0.02 16 35 H 0.09 1.65 7.38 -51.93 -0.38 1.27 16 36 H 0.09 1.46 8.03 -52.49 -0.42 1.04 16 37 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.10 2.33 4.76 -52.49 -0.25 2.08 16 40 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 41 H 0.06 0.70 7.81 -51.93 -0.41 0.30 16 42 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -33.13 360.55 -10.04 -43.18 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.18 Total: 3.07 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -3.49 Total: -25.37 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.09 Total: -41.54 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -2.04 Total: -25.34 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.17 Total: 16.12 kcal Atomic # 16 Polarization: 25.13 SS G_CDS: -0.68 Total: 24.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.13 -10.04 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235525610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.510 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds