Wall clock time and date at job start Wed Apr 1 2020 04:04:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.45196 * 109.47144 * 2 1
4 4 C 1.34229 * 116.99734 * 179.97438 * 3 2 1
5 5 O 1.20823 * 120.00198 * 0.02562 * 4 3 2
6 6 C 1.50708 * 119.99892 * 179.97438 * 4 3 2
7 7 N 1.46500 * 109.46998 * 180.02562 * 6 4 3
8 8 C 1.46505 * 119.99870 * 270.00216 * 7 6 4
9 9 C 1.50704 * 109.46882 * 270.00090 * 8 7 6
10 10 H 1.07998 * 119.99889 * 359.97438 * 9 8 7
11 11 C 1.37875 * 119.99613 * 180.02562 * 9 8 7
12 12 N 1.31519 * 120.00206 * 0.02562 * 11 9 8
13 13 Si 1.86798 * 119.99825 * 179.97438 * 11 9 8
14 14 H 1.48498 * 109.46918 * 90.00285 * 13 11 9
15 15 H 1.48502 * 109.47147 * 209.99903 * 13 11 9
16 16 H 1.48502 * 109.47219 * 330.00372 * 13 11 9
17 17 C 1.34775 * 119.99864 * 90.00122 * 7 6 4
18 18 S 1.71189 * 120.00162 * 0.02562 * 17 7 6
19 19 N 1.34776 * 119.99741 * 179.97438 * 17 7 6
20 20 C 1.39476 * 120.00000 * 184.13361 * 19 17 7
21 21 C 1.39130 * 119.92260 * 134.52413 * 20 19 17
22 22 C 1.37677 * 120.07870 * 180.02562 * 21 20 19
23 23 C 1.39788 * 119.92339 * 359.97438 * 22 21 20
24 24 C 1.43195 * 120.07892 * 179.97438 * 23 22 21
25 25 N 9.97835 * 134.38304 * 101.60862 * 5 1 2
26 26 C 1.39786 * 119.84067 * 0.25228 * 23 22 21
27 27 C 1.37688 * 119.91772 * 359.50928 * 26 23 22
28 28 H 1.09006 * 109.46846 * 59.99972 * 1 2 3
29 29 H 1.08996 * 109.47667 * 179.97438 * 1 2 3
30 30 H 1.09006 * 109.47605 * 300.00453 * 1 2 3
31 31 H 1.08999 * 109.46984 * 239.99425 * 2 1 3
32 32 H 1.09006 * 109.46846 * 120.00028 * 2 1 3
33 33 H 1.09000 * 109.46567 * 60.00714 * 6 4 3
34 34 H 1.08997 * 109.47400 * 300.00491 * 6 4 3
35 35 H 1.09001 * 109.47078 * 29.99951 * 8 7 6
36 36 H 1.09001 * 109.47134 * 150.00342 * 8 7 6
37 37 H 0.96995 * 119.99984 * 179.97438 * 12 11 9
38 38 H 0.97001 * 120.00217 * 4.13226 * 19 17 7
39 39 H 1.07996 * 119.95726 * 0.02562 * 21 20 19
40 40 H 1.07997 * 120.03933 * 179.97438 * 22 21 20
41 41 H 1.08003 * 120.03945 * 179.74861 * 26 23 22
42 42 H 1.07996 * 119.95593 * 180.21014 * 27 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3447 1.5447 0.0005
5 8 4.0807 0.5865 0.0005
6 6 3.9208 2.9374 0.0000
7 7 5.3838 2.8606 0.0001
8 6 6.1152 2.8227 1.2690
9 6 6.4403 4.2287 1.7035
10 1 6.1333 5.0665 1.0951
11 6 7.1307 4.4451 2.8771
12 7 7.5059 3.4247 3.6172
13 14 7.5344 6.1877 3.4154
14 1 6.4308 6.7136 4.2583
15 1 8.7965 6.1842 4.1980
16 1 7.6969 7.0507 2.2178
17 6 6.0568 2.8248 -1.1670
18 16 5.2021 2.8697 -2.6497
19 7 7.4027 2.7548 -1.1669
20 6 8.1038 2.8047 -2.3716
21 6 9.2268 3.6176 -2.4879
22 6 9.9209 3.6698 -3.6757
23 6 9.4964 2.9043 -4.7656
24 6 10.2155 2.9564 -6.0028
25 7 10.7849 3.0061 -6.9828
26 6 8.3648 2.0923 -4.6466
27 6 7.6784 2.0413 -3.4541
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 3.5845 3.4699 0.8896
34 1 3.5852 3.4690 -0.8904
35 1 5.4999 2.3407 2.0287
36 1 7.0394 2.2597 1.1389
37 1 7.9919 3.5770 4.4426
38 1 7.8839 2.6696 -0.3289
39 1 9.5545 4.2084 -1.6453
40 1 10.7924 4.3013 -3.7654
41 1 8.0316 1.5026 -5.4879
42 1 6.8061 1.4116 -3.3605
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001245915796.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:04:57
Heat of formation + Delta-G solvation = -3.541106 kcal
Electronic energy + Delta-G solvation = -27192.695249 eV
Core-core repulsion = 23264.781597 eV
Total energy + Delta-G solvation = -3927.913652 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.50084 -39.99527 -38.50019 -36.80061 -36.24330 -35.03174 -33.21268 -31.82846
-31.14196 -30.31982 -29.01995 -27.57093 -24.60350 -23.68377 -23.04349 -22.92711
-21.41653 -20.54928 -18.88617 -18.38170 -17.80751 -17.68799 -16.91734 -16.44899
-16.21472 -15.52507 -15.44136 -14.98945 -14.51452 -14.30419 -14.05163 -13.93146
-13.79824 -13.60040 -13.47885 -13.12060 -12.89247 -12.76076 -12.63833 -12.34892
-12.21385 -12.00067 -11.88688 -11.65688 -11.59820 -11.41739 -11.12955 -11.05986
-10.86197 -10.48472 -10.46476 -10.41192 -10.13570 -9.29207 -9.06505 -8.94384
-8.21846 -7.44003 -6.87570 -6.54819 -4.68539 0.64802 1.44581 1.76304
2.20236 2.45647 2.57315 2.66721 2.94480 3.02873 3.11974 3.14524
3.16358 3.64290 3.91116 3.94546 4.05141 4.78635 4.80602 4.87675
4.89112 4.90539 4.97940 5.23014 5.23682 5.28746 5.44595 5.56399
5.61710 5.63277 5.71320 5.87649 5.90778 5.99132 6.10936 6.31305
6.35981 6.50540 6.55395 6.64072 6.75490 6.93810 7.21967 7.38754
7.47400 7.51491 7.58830 7.95607 8.39702 9.02995 10.51015
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.006885 B = 0.004168 C = 0.002737
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4065.721221 B = 6716.608495 C =10227.284923
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.063 3.937
3 O -0.357 6.357
4 C 0.459 3.541
5 O -0.499 6.499
6 C 0.122 3.878
7 N -0.523 5.523
8 C 0.226 3.774
9 C -0.557 4.557
10 H 0.070 0.930
11 C 0.072 3.928
12 N -0.882 5.882
13 Si 0.905 3.095
14 H -0.276 1.276
15 H -0.282 1.282
16 H -0.270 1.270
17 C 0.582 3.418
18 S -0.679 6.679
19 N -0.630 5.630
20 C 0.173 3.827
21 C -0.126 4.126
22 C -0.065 4.065
23 C -0.043 4.043
24 C 0.266 3.734
25 N -0.434 5.434
26 C -0.065 4.065
27 C -0.074 4.074
28 H 0.067 0.933
29 H 0.076 0.924
30 H 0.066 0.934
31 H 0.069 0.931
32 H 0.067 0.933
33 H 0.134 0.866
34 H 0.147 0.853
35 H 0.054 0.946
36 H 0.040 0.960
37 H 0.271 0.729
38 H 0.422 0.578
39 H 0.138 0.862
40 H 0.134 0.866
41 H 0.133 0.867
42 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.646 -3.520 -4.556 7.398
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.011 4.011
3 O -0.274 6.274
4 C 0.299 3.701
5 O -0.386 6.386
6 C -0.004 4.004
7 N -0.226 5.226
8 C 0.105 3.895
9 C -0.596 4.596
10 H 0.088 0.912
11 C -0.134 4.134
12 N -0.519 5.519
13 Si 0.731 3.269
14 H -0.201 1.201
15 H -0.208 1.208
16 H -0.194 1.194
17 C 0.221 3.779
18 S -0.546 6.546
19 N -0.258 5.258
20 C 0.078 3.922
21 C -0.147 4.147
22 C -0.087 4.087
23 C -0.047 4.047
24 C -0.049 4.049
25 N -0.110 5.110
26 C -0.087 4.087
27 C -0.097 4.097
28 H 0.086 0.914
29 H 0.095 0.905
30 H 0.085 0.915
31 H 0.087 0.913
32 H 0.086 0.914
33 H 0.151 0.849
34 H 0.164 0.836
35 H 0.072 0.928
36 H 0.058 0.942
37 H 0.081 0.919
38 H 0.266 0.734
39 H 0.156 0.844
40 H 0.151 0.849
41 H 0.151 0.849
42 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -4.114 -3.784 -6.661 8.695
hybrid contribution 0.683 0.652 2.181 2.376
sum -3.431 -3.132 -4.480 6.454
Atomic orbital electron populations
1.21795 0.92772 1.02724 1.03530 1.22972 0.95143 0.80482 1.02516
1.86471 1.24365 1.32185 1.84349 1.24066 0.80709 0.93087 0.72219
1.90662 1.60348 1.42816 1.44724 1.21234 0.78752 0.91566 1.08860
1.47090 1.05894 1.63552 1.06019 1.19890 0.92443 0.98886 0.78249
1.21350 1.38905 0.91294 1.08013 0.91202 1.24960 0.94629 0.98094
0.95676 1.69915 1.37153 1.30605 1.14183 0.86363 0.78197 0.83261
0.79030 1.20119 1.20791 1.19438 1.22004 0.84818 0.79461 0.91569
1.93107 1.68039 1.77130 1.16306 1.42219 1.03738 1.70135 1.09704
1.17703 0.92698 0.95766 0.86078 1.20930 0.96536 0.98590 0.98682
1.20795 0.99361 0.97647 0.90908 1.16065 0.97005 1.03520 0.88096
1.25712 0.93092 0.93255 0.92865 1.81155 1.09687 1.08891 1.11245
1.20928 0.92522 0.97336 0.97955 1.21531 0.98696 0.97973 0.91503
0.91409 0.90475 0.91501 0.91269 0.91429 0.84870 0.83611 0.92805
0.94207 0.91882 0.73446 0.84416 0.84859 0.84878 0.82434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16
2 C 0.06 0.74 6.19 37.16 0.23 0.97 16
3 O -0.36 -5.14 10.22 -39.26 -0.40 -5.54 16
4 C 0.46 7.63 8.02 36.01 0.29 7.92 16
5 O -0.50 -9.68 16.18 -18.75 -0.30 -9.98 16
6 C 0.12 1.95 5.76 -5.19 -0.03 1.92 16
7 N -0.52 -9.53 1.94 -178.46 -0.35 -9.88 16
8 C 0.23 4.63 4.96 -5.19 -0.03 4.61 16
9 C -0.56 -12.42 9.39 -34.44 -0.32 -12.74 16
10 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16
11 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16
12 N -0.88 -21.65 13.29 55.43 0.74 -20.91 16
13 Si 0.91 18.35 29.54 -169.99 -5.02 13.33 16
14 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16
15 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16
16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16
17 C 0.58 10.56 7.55 -86.92 -0.66 9.90 16
18 S -0.68 -12.98 24.22 -107.50 -2.60 -15.58 16
19 N -0.63 -10.21 5.17 -11.39 -0.06 -10.27 16
20 C 0.17 2.48 5.93 -83.72 -0.50 1.99 16
21 C -0.13 -1.53 9.95 -39.46 -0.39 -1.92 16
22 C -0.07 -0.70 9.75 -39.21 -0.38 -1.08 16
23 C -0.04 -0.49 5.74 -106.82 -0.61 -1.10 16
24 C 0.27 3.34 15.32 -22.53 -0.35 2.99 16
25 N -0.43 -6.29 18.53 41.78 0.77 -5.52 16
26 C -0.06 -0.77 9.75 -39.20 -0.38 -1.15 16
27 C -0.07 -1.04 7.84 -39.45 -0.31 -1.35 16
28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16
32 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16
33 H 0.13 1.89 8.07 -51.93 -0.42 1.47 16
34 H 0.15 2.29 6.58 -51.93 -0.34 1.95 16
35 H 0.05 1.20 8.07 -51.93 -0.42 0.78 16
36 H 0.04 0.84 6.31 -51.93 -0.33 0.51 16
37 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16
38 H 0.42 6.81 6.52 -40.82 -0.27 6.54 16
39 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16
40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16
41 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16
42 H 0.16 2.48 6.10 -44.33 -0.27 2.21 16
LS Contribution 384.93 15.07 5.80 5.80
Total: -1.00 -28.48 384.93 -9.55 -38.03
By element:
Atomic # 1 Polarization: 13.86 SS G_CDS: -4.97 Total: 8.89 kcal
Atomic # 6 Polarization: 14.78 SS G_CDS: -3.15 Total: 11.63 kcal
Atomic # 7 Polarization: -47.67 SS G_CDS: 1.10 Total: -46.57 kcal
Atomic # 8 Polarization: -14.82 SS G_CDS: -0.70 Total: -15.52 kcal
Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.33 kcal
Atomic # 16 Polarization: -12.98 SS G_CDS: -2.60 Total: -15.58 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -28.48 -9.55 -38.03 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001245915796.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.487 kcal
(2) G-P(sol) polarization free energy of solvation -28.482 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.005 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds