Wall clock time and date at job start Wed Apr 1 2020 04:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47144 * 2 1 4 4 C 1.34229 * 116.99734 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00198 * 0.02562 * 4 3 2 6 6 C 1.50708 * 119.99892 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.46998 * 180.02562 * 6 4 3 8 8 C 1.46505 * 119.99870 * 270.00216 * 7 6 4 9 9 C 1.50704 * 109.46882 * 270.00090 * 8 7 6 10 10 H 1.07998 * 119.99889 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99613 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00206 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99825 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46918 * 90.00285 * 13 11 9 15 15 H 1.48502 * 109.47147 * 209.99903 * 13 11 9 16 16 H 1.48502 * 109.47219 * 330.00372 * 13 11 9 17 17 C 1.34775 * 119.99864 * 90.00122 * 7 6 4 18 18 S 1.71189 * 120.00162 * 0.02562 * 17 7 6 19 19 N 1.34776 * 119.99741 * 179.97438 * 17 7 6 20 20 C 1.39476 * 120.00000 * 184.13361 * 19 17 7 21 21 C 1.39130 * 119.92260 * 134.52413 * 20 19 17 22 22 C 1.37677 * 120.07870 * 180.02562 * 21 20 19 23 23 C 1.39788 * 119.92339 * 359.97438 * 22 21 20 24 24 C 1.43195 * 120.07892 * 179.97438 * 23 22 21 25 25 N 9.97835 * 134.38304 * 101.60862 * 5 1 2 26 26 C 1.39786 * 119.84067 * 0.25228 * 23 22 21 27 27 C 1.37688 * 119.91772 * 359.50928 * 26 23 22 28 28 H 1.09006 * 109.46846 * 59.99972 * 1 2 3 29 29 H 1.08996 * 109.47667 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47605 * 300.00453 * 1 2 3 31 31 H 1.08999 * 109.46984 * 239.99425 * 2 1 3 32 32 H 1.09006 * 109.46846 * 120.00028 * 2 1 3 33 33 H 1.09000 * 109.46567 * 60.00714 * 6 4 3 34 34 H 1.08997 * 109.47400 * 300.00491 * 6 4 3 35 35 H 1.09001 * 109.47078 * 29.99951 * 8 7 6 36 36 H 1.09001 * 109.47134 * 150.00342 * 8 7 6 37 37 H 0.96995 * 119.99984 * 179.97438 * 12 11 9 38 38 H 0.97001 * 120.00217 * 4.13226 * 19 17 7 39 39 H 1.07996 * 119.95726 * 0.02562 * 21 20 19 40 40 H 1.07997 * 120.03933 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.03945 * 179.74861 * 26 23 22 42 42 H 1.07996 * 119.95593 * 180.21014 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3838 2.8606 0.0001 8 6 6.1152 2.8227 1.2690 9 6 6.4403 4.2287 1.7035 10 1 6.1333 5.0665 1.0951 11 6 7.1307 4.4451 2.8771 12 7 7.5059 3.4247 3.6172 13 14 7.5344 6.1877 3.4154 14 1 6.4308 6.7136 4.2583 15 1 8.7965 6.1842 4.1980 16 1 7.6969 7.0507 2.2178 17 6 6.0568 2.8248 -1.1670 18 16 5.2021 2.8697 -2.6497 19 7 7.4027 2.7548 -1.1669 20 6 8.1038 2.8047 -2.3716 21 6 9.2268 3.6176 -2.4879 22 6 9.9209 3.6698 -3.6757 23 6 9.4964 2.9043 -4.7656 24 6 10.2155 2.9564 -6.0028 25 7 10.7849 3.0061 -6.9828 26 6 8.3648 2.0923 -4.6466 27 6 7.6784 2.0413 -3.4541 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.5845 3.4699 0.8896 34 1 3.5852 3.4690 -0.8904 35 1 5.4999 2.3407 2.0287 36 1 7.0394 2.2597 1.1389 37 1 7.9919 3.5770 4.4426 38 1 7.8839 2.6696 -0.3289 39 1 9.5545 4.2084 -1.6453 40 1 10.7924 4.3013 -3.7654 41 1 8.0316 1.5026 -5.4879 42 1 6.8061 1.4116 -3.3605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245915796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:57 Heat of formation + Delta-G solvation = -3.541106 kcal Electronic energy + Delta-G solvation = -27192.695249 eV Core-core repulsion = 23264.781597 eV Total energy + Delta-G solvation = -3927.913652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50084 -39.99527 -38.50019 -36.80061 -36.24330 -35.03174 -33.21268 -31.82846 -31.14196 -30.31982 -29.01995 -27.57093 -24.60350 -23.68377 -23.04349 -22.92711 -21.41653 -20.54928 -18.88617 -18.38170 -17.80751 -17.68799 -16.91734 -16.44899 -16.21472 -15.52507 -15.44136 -14.98945 -14.51452 -14.30419 -14.05163 -13.93146 -13.79824 -13.60040 -13.47885 -13.12060 -12.89247 -12.76076 -12.63833 -12.34892 -12.21385 -12.00067 -11.88688 -11.65688 -11.59820 -11.41739 -11.12955 -11.05986 -10.86197 -10.48472 -10.46476 -10.41192 -10.13570 -9.29207 -9.06505 -8.94384 -8.21846 -7.44003 -6.87570 -6.54819 -4.68539 0.64802 1.44581 1.76304 2.20236 2.45647 2.57315 2.66721 2.94480 3.02873 3.11974 3.14524 3.16358 3.64290 3.91116 3.94546 4.05141 4.78635 4.80602 4.87675 4.89112 4.90539 4.97940 5.23014 5.23682 5.28746 5.44595 5.56399 5.61710 5.63277 5.71320 5.87649 5.90778 5.99132 6.10936 6.31305 6.35981 6.50540 6.55395 6.64072 6.75490 6.93810 7.21967 7.38754 7.47400 7.51491 7.58830 7.95607 8.39702 9.02995 10.51015 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.006885 B = 0.004168 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4065.721221 B = 6716.608495 C =10227.284923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.357 6.357 4 C 0.459 3.541 5 O -0.499 6.499 6 C 0.122 3.878 7 N -0.523 5.523 8 C 0.226 3.774 9 C -0.557 4.557 10 H 0.070 0.930 11 C 0.072 3.928 12 N -0.882 5.882 13 Si 0.905 3.095 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.582 3.418 18 S -0.679 6.679 19 N -0.630 5.630 20 C 0.173 3.827 21 C -0.126 4.126 22 C -0.065 4.065 23 C -0.043 4.043 24 C 0.266 3.734 25 N -0.434 5.434 26 C -0.065 4.065 27 C -0.074 4.074 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.271 0.729 38 H 0.422 0.578 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -3.520 -4.556 7.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.274 6.274 4 C 0.299 3.701 5 O -0.386 6.386 6 C -0.004 4.004 7 N -0.226 5.226 8 C 0.105 3.895 9 C -0.596 4.596 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.519 5.519 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.194 1.194 17 C 0.221 3.779 18 S -0.546 6.546 19 N -0.258 5.258 20 C 0.078 3.922 21 C -0.147 4.147 22 C -0.087 4.087 23 C -0.047 4.047 24 C -0.049 4.049 25 N -0.110 5.110 26 C -0.087 4.087 27 C -0.097 4.097 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.266 0.734 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.114 -3.784 -6.661 8.695 hybrid contribution 0.683 0.652 2.181 2.376 sum -3.431 -3.132 -4.480 6.454 Atomic orbital electron populations 1.21795 0.92772 1.02724 1.03530 1.22972 0.95143 0.80482 1.02516 1.86471 1.24365 1.32185 1.84349 1.24066 0.80709 0.93087 0.72219 1.90662 1.60348 1.42816 1.44724 1.21234 0.78752 0.91566 1.08860 1.47090 1.05894 1.63552 1.06019 1.19890 0.92443 0.98886 0.78249 1.21350 1.38905 0.91294 1.08013 0.91202 1.24960 0.94629 0.98094 0.95676 1.69915 1.37153 1.30605 1.14183 0.86363 0.78197 0.83261 0.79030 1.20119 1.20791 1.19438 1.22004 0.84818 0.79461 0.91569 1.93107 1.68039 1.77130 1.16306 1.42219 1.03738 1.70135 1.09704 1.17703 0.92698 0.95766 0.86078 1.20930 0.96536 0.98590 0.98682 1.20795 0.99361 0.97647 0.90908 1.16065 0.97005 1.03520 0.88096 1.25712 0.93092 0.93255 0.92865 1.81155 1.09687 1.08891 1.11245 1.20928 0.92522 0.97336 0.97955 1.21531 0.98696 0.97973 0.91503 0.91409 0.90475 0.91501 0.91269 0.91429 0.84870 0.83611 0.92805 0.94207 0.91882 0.73446 0.84416 0.84859 0.84878 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.14 10.22 -39.26 -0.40 -5.54 16 4 C 0.46 7.63 8.02 36.01 0.29 7.92 16 5 O -0.50 -9.68 16.18 -18.75 -0.30 -9.98 16 6 C 0.12 1.95 5.76 -5.19 -0.03 1.92 16 7 N -0.52 -9.53 1.94 -178.46 -0.35 -9.88 16 8 C 0.23 4.63 4.96 -5.19 -0.03 4.61 16 9 C -0.56 -12.42 9.39 -34.44 -0.32 -12.74 16 10 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.88 -21.65 13.29 55.43 0.74 -20.91 16 13 Si 0.91 18.35 29.54 -169.99 -5.02 13.33 16 14 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 C 0.58 10.56 7.55 -86.92 -0.66 9.90 16 18 S -0.68 -12.98 24.22 -107.50 -2.60 -15.58 16 19 N -0.63 -10.21 5.17 -11.39 -0.06 -10.27 16 20 C 0.17 2.48 5.93 -83.72 -0.50 1.99 16 21 C -0.13 -1.53 9.95 -39.46 -0.39 -1.92 16 22 C -0.07 -0.70 9.75 -39.21 -0.38 -1.08 16 23 C -0.04 -0.49 5.74 -106.82 -0.61 -1.10 16 24 C 0.27 3.34 15.32 -22.53 -0.35 2.99 16 25 N -0.43 -6.29 18.53 41.78 0.77 -5.52 16 26 C -0.06 -0.77 9.75 -39.20 -0.38 -1.15 16 27 C -0.07 -1.04 7.84 -39.45 -0.31 -1.35 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 32 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.13 1.89 8.07 -51.93 -0.42 1.47 16 34 H 0.15 2.29 6.58 -51.93 -0.34 1.95 16 35 H 0.05 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.04 0.84 6.31 -51.93 -0.33 0.51 16 37 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 38 H 0.42 6.81 6.52 -40.82 -0.27 6.54 16 39 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 42 H 0.16 2.48 6.10 -44.33 -0.27 2.21 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -28.48 384.93 -9.55 -38.03 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.97 Total: 8.89 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: -3.15 Total: 11.63 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 1.10 Total: -46.57 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.70 Total: -15.52 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.33 kcal Atomic # 16 Polarization: -12.98 SS G_CDS: -2.60 Total: -15.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.48 -9.55 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245915796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.487 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds