Wall clock time and date at job start Wed Apr 1 2020 04:04:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.45196 * 109.47144 * 2 1
4 4 C 1.34229 * 116.99734 * 179.97438 * 3 2 1
5 5 O 1.20823 * 120.00198 * 0.02562 * 4 3 2
6 6 C 1.50708 * 119.99892 * 179.97438 * 4 3 2
7 7 N 1.46500 * 109.46998 * 180.02562 * 6 4 3
8 8 C 1.46505 * 119.99870 * 270.00216 * 7 6 4
9 9 C 1.50704 * 109.46882 * 270.00090 * 8 7 6
10 10 H 1.07998 * 119.99889 * 359.97438 * 9 8 7
11 11 C 1.37875 * 119.99613 * 180.02562 * 9 8 7
12 12 N 1.31519 * 120.00206 * 0.02562 * 11 9 8
13 13 Si 1.86798 * 119.99825 * 179.97438 * 11 9 8
14 14 H 1.48498 * 109.46918 * 90.00285 * 13 11 9
15 15 H 1.48502 * 109.47147 * 209.99903 * 13 11 9
16 16 H 1.48502 * 109.47219 * 330.00372 * 13 11 9
17 17 C 1.34775 * 119.99864 * 90.00122 * 7 6 4
18 18 S 1.71189 * 120.00162 * 0.02562 * 17 7 6
19 19 N 1.34776 * 119.99741 * 179.97438 * 17 7 6
20 20 C 1.39476 * 120.00000 * 184.13361 * 19 17 7
21 21 C 1.39130 * 119.92260 * 134.52413 * 20 19 17
22 22 C 1.37677 * 120.07870 * 180.02562 * 21 20 19
23 23 C 1.39788 * 119.92339 * 359.97438 * 22 21 20
24 24 C 1.43195 * 120.07892 * 179.97438 * 23 22 21
25 25 N 9.97835 * 134.38304 * 101.60862 * 5 1 2
26 26 C 1.39786 * 119.84067 * 0.25228 * 23 22 21
27 27 C 1.37688 * 119.91772 * 359.50928 * 26 23 22
28 28 H 1.09006 * 109.46846 * 59.99972 * 1 2 3
29 29 H 1.08996 * 109.47667 * 179.97438 * 1 2 3
30 30 H 1.09006 * 109.47605 * 300.00453 * 1 2 3
31 31 H 1.08999 * 109.46984 * 239.99425 * 2 1 3
32 32 H 1.09006 * 109.46846 * 120.00028 * 2 1 3
33 33 H 1.09000 * 109.46567 * 60.00714 * 6 4 3
34 34 H 1.08997 * 109.47400 * 300.00491 * 6 4 3
35 35 H 1.09001 * 109.47078 * 29.99951 * 8 7 6
36 36 H 1.09001 * 109.47134 * 150.00342 * 8 7 6
37 37 H 0.96995 * 119.99984 * 179.97438 * 12 11 9
38 38 H 0.97001 * 120.00217 * 4.13226 * 19 17 7
39 39 H 1.07996 * 119.95726 * 0.02562 * 21 20 19
40 40 H 1.07997 * 120.03933 * 179.97438 * 22 21 20
41 41 H 1.08003 * 120.03945 * 179.74861 * 26 23 22
42 42 H 1.07996 * 119.95593 * 180.21014 * 27 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3447 1.5447 0.0005
5 8 4.0807 0.5865 0.0005
6 6 3.9208 2.9374 0.0000
7 7 5.3838 2.8606 0.0001
8 6 6.1152 2.8227 1.2690
9 6 6.4403 4.2287 1.7035
10 1 6.1333 5.0665 1.0951
11 6 7.1307 4.4451 2.8771
12 7 7.5059 3.4247 3.6172
13 14 7.5344 6.1877 3.4154
14 1 6.4308 6.7136 4.2583
15 1 8.7965 6.1842 4.1980
16 1 7.6969 7.0507 2.2178
17 6 6.0568 2.8248 -1.1670
18 16 5.2021 2.8697 -2.6497
19 7 7.4027 2.7548 -1.1669
20 6 8.1038 2.8047 -2.3716
21 6 9.2268 3.6176 -2.4879
22 6 9.9209 3.6698 -3.6757
23 6 9.4964 2.9043 -4.7656
24 6 10.2155 2.9564 -6.0028
25 7 10.7849 3.0061 -6.9828
26 6 8.3648 2.0923 -4.6466
27 6 7.6784 2.0413 -3.4541
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 3.5845 3.4699 0.8896
34 1 3.5852 3.4690 -0.8904
35 1 5.4999 2.3407 2.0287
36 1 7.0394 2.2597 1.1389
37 1 7.9919 3.5770 4.4426
38 1 7.8839 2.6696 -0.3289
39 1 9.5545 4.2084 -1.6453
40 1 10.7924 4.3013 -3.7654
41 1 8.0316 1.5026 -5.4879
42 1 6.8061 1.4116 -3.3605
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001245915796.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:04:56
Heat of formation + Delta-G solvation = -15.225740 kcal
Electronic energy + Delta-G solvation = -27193.201933 eV
Core-core repulsion = 23264.781597 eV
Total energy + Delta-G solvation = -3928.420336 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.80151 -41.15810 -39.73706 -37.96178 -37.46752 -36.28902 -34.93938 -32.75581
-32.13249 -31.42818 -30.58149 -28.91595 -26.15160 -24.86984 -24.09299 -23.94838
-22.64611 -21.90662 -19.91184 -19.63277 -19.21321 -19.04113 -18.52491 -17.63399
-17.50317 -16.82873 -16.66744 -16.45161 -15.64784 -15.47503 -15.28209 -15.12473
-15.01656 -14.64073 -14.48231 -14.30531 -14.26400 -13.84705 -13.69109 -13.56932
-13.47941 -13.21767 -13.12082 -12.92875 -12.82501 -12.67753 -12.49464 -12.42953
-12.19663 -12.02598 -11.86713 -11.66270 -11.52168 -10.72691 -10.59482 -10.06197
-9.43934 -8.93126 -8.32918 -8.28937 -6.50541 -0.43533 0.42521 0.47971
0.77906 1.13596 1.27582 1.43030 1.48348 1.55963 1.64591 1.82779
2.01521 2.24634 2.39023 2.88905 2.93665 3.00596 3.67502 3.89278
3.96441 3.98750 4.03182 4.10836 4.23177 4.33343 4.35215 4.37309
4.48721 4.62055 4.83432 4.88326 4.94022 4.95375 5.09212 5.14242
5.16282 5.30269 5.39354 5.42965 5.47720 5.61102 5.69714 5.77247
5.95171 6.23851 6.46541 6.62132 6.67607 7.23773 8.73492
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.006885 B = 0.004168 C = 0.002737
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4065.721221 B = 6716.608495 C =10227.284923
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.053 3.947
3 O -0.354 6.354
4 C 0.462 3.538
5 O -0.533 6.533
6 C 0.120 3.880
7 N -0.528 5.528
8 C 0.243 3.757
9 C -0.554 4.554
10 H 0.067 0.933
11 C 0.033 3.967
12 N -0.913 5.913
13 Si 0.961 3.039
14 H -0.276 1.276
15 H -0.283 1.283
16 H -0.267 1.267
17 C 0.581 3.419
18 S -0.702 6.702
19 N -0.624 5.624
20 C 0.149 3.851
21 C -0.122 4.122
22 C -0.050 4.050
23 C -0.037 4.037
24 C 0.287 3.713
25 N -0.465 5.465
26 C -0.057 4.057
27 C -0.085 4.085
28 H 0.070 0.930
29 H 0.101 0.899
30 H 0.071 0.929
31 H 0.063 0.937
32 H 0.066 0.934
33 H 0.151 0.849
34 H 0.151 0.849
35 H 0.034 0.966
36 H 0.032 0.968
37 H 0.272 0.728
38 H 0.422 0.578
39 H 0.151 0.849
40 H 0.164 0.836
41 H 0.150 0.850
42 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.466 -2.505 -4.966 7.133
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.020 4.020
3 O -0.270 6.270
4 C 0.304 3.696
5 O -0.422 6.422
6 C -0.005 4.005
7 N -0.231 5.231
8 C 0.121 3.879
9 C -0.592 4.592
10 H 0.085 0.915
11 C -0.169 4.169
12 N -0.551 5.551
13 Si 0.787 3.213
14 H -0.201 1.201
15 H -0.209 1.209
16 H -0.191 1.191
17 C 0.220 3.780
18 S -0.570 6.570
19 N -0.250 5.250
20 C 0.054 3.946
21 C -0.143 4.143
22 C -0.071 4.071
23 C -0.042 4.042
24 C -0.027 4.027
25 N -0.141 5.141
26 C -0.079 4.079
27 C -0.107 4.107
28 H 0.089 0.911
29 H 0.120 0.880
30 H 0.090 0.910
31 H 0.082 0.918
32 H 0.084 0.916
33 H 0.168 0.832
34 H 0.169 0.831
35 H 0.053 0.947
36 H 0.050 0.950
37 H 0.081 0.919
38 H 0.265 0.735
39 H 0.168 0.832
40 H 0.181 0.819
41 H 0.167 0.833
42 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -3.937 -2.765 -7.106 8.581
hybrid contribution 0.621 0.274 2.253 2.353
sum -3.316 -2.491 -4.853 6.383
Atomic orbital electron populations
1.21816 0.89818 1.04450 1.03903 1.23303 0.97412 0.79087 1.02205
1.86473 1.22965 1.33904 1.83687 1.24142 0.81254 0.92848 0.71312
1.90644 1.61230 1.43806 1.46490 1.21393 0.77655 0.91594 1.09863
1.47010 1.06672 1.64124 1.05266 1.19501 0.91887 0.97807 0.78691
1.21485 1.38191 0.91818 1.07731 0.91504 1.25600 0.94637 1.00894
0.95819 1.70004 1.38180 1.32230 1.14655 0.85486 0.77704 0.79640
0.78501 1.20130 1.20892 1.19118 1.21993 0.85509 0.79504 0.91039
1.93071 1.68693 1.78245 1.16995 1.42290 1.03146 1.69108 1.10487
1.17996 0.93731 0.97284 0.85546 1.21071 0.95542 0.98052 0.99628
1.21084 0.99510 0.96835 0.89702 1.16066 0.96655 1.03466 0.87964
1.25654 0.92311 0.92284 0.92474 1.81192 1.10763 1.09962 1.12137
1.21037 0.92192 0.97121 0.97583 1.21335 0.98733 0.98324 0.92331
0.91135 0.88049 0.90976 0.91842 0.91603 0.83169 0.83123 0.94746
0.94995 0.91913 0.73548 0.83169 0.81876 0.83253 0.84524
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.18 10.29 71.98 0.74 -1.44 16
2 C 0.05 1.24 6.19 71.98 0.45 1.69 16
3 O -0.35 -10.14 10.22 -51.41 -0.53 -10.67 16
4 C 0.46 15.58 8.02 71.24 0.57 16.15 16
5 O -0.53 -21.20 16.18 21.97 0.36 -20.84 16
6 C 0.12 3.86 5.76 85.64 0.49 4.35 16
7 N -0.53 -19.43 1.94 -718.51 -1.40 -20.83 16
8 C 0.24 10.10 4.96 85.63 0.42 10.53 16
9 C -0.55 -24.51 9.39 25.60 0.24 -24.27 16
10 H 0.07 2.98 7.81 -2.91 -0.02 2.95 16
11 C 0.03 1.52 5.46 84.65 0.46 1.98 16
12 N -0.91 -44.88 13.29 21.45 0.28 -44.60 16
13 Si 0.96 36.96 29.54 68.60 2.03 38.99 16
14 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16
15 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16
16 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16
17 C 0.58 21.26 7.55 179.06 1.35 22.61 16
18 S -0.70 -26.99 24.22 -56.49 -1.37 -28.36 16
19 N -0.62 -20.24 5.17 -189.95 -0.98 -21.23 16
20 C 0.15 4.17 5.93 38.35 0.23 4.40 16
21 C -0.12 -2.71 9.95 22.35 0.22 -2.49 16
22 C -0.05 -0.93 9.75 22.51 0.22 -0.71 16
23 C -0.04 -0.77 5.74 -21.29 -0.12 -0.89 16
24 C 0.29 6.58 15.32 88.35 1.35 7.93 16
25 N -0.46 -12.66 18.53 18.98 0.35 -12.31 16
26 C -0.06 -1.28 9.75 22.51 0.22 -1.06 16
27 C -0.08 -2.34 7.84 22.35 0.18 -2.16 16
28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16
29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16
30 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16
31 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16
32 H 0.07 1.55 8.13 -2.38 -0.02 1.53 16
33 H 0.15 4.22 8.07 -2.39 -0.02 4.20 16
34 H 0.15 4.72 6.58 -2.39 -0.02 4.70 16
35 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16
36 H 0.03 1.38 6.31 -2.39 -0.02 1.37 16
37 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16
38 H 0.42 13.70 6.52 -92.71 -0.60 13.10 16
39 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16
40 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16
41 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16
42 H 0.14 4.40 6.10 -8.10 -0.05 4.35 16
Total: -1.00 -60.58 384.93 6.21 -54.38
By element:
Atomic # 1 Polarization: 28.41 SS G_CDS: 0.44 Total: 28.85 kcal
Atomic # 6 Polarization: 29.59 SS G_CDS: 7.03 Total: 36.61 kcal
Atomic # 7 Polarization: -97.22 SS G_CDS: -1.74 Total: -98.96 kcal
Atomic # 8 Polarization: -31.34 SS G_CDS: -0.17 Total: -31.51 kcal
Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal
Atomic # 16 Polarization: -26.99 SS G_CDS: -1.37 Total: -28.36 kcal
Total: -60.58 6.21 -54.38 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001245915796.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.150 kcal
(2) G-P(sol) polarization free energy of solvation -60.584 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.434 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.376 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.226 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds