Wall clock time and date at job start Wed Apr 1 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47144 * 2 1 4 4 C 1.34229 * 116.99734 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00198 * 0.02562 * 4 3 2 6 6 C 1.50708 * 119.99892 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.46998 * 180.02562 * 6 4 3 8 8 C 1.46505 * 119.99870 * 270.00216 * 7 6 4 9 9 C 1.50704 * 109.46882 * 270.00090 * 8 7 6 10 10 H 1.07998 * 119.99889 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99613 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00206 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99825 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46918 * 90.00285 * 13 11 9 15 15 H 1.48502 * 109.47147 * 209.99903 * 13 11 9 16 16 H 1.48502 * 109.47219 * 330.00372 * 13 11 9 17 17 C 1.34775 * 119.99864 * 90.00122 * 7 6 4 18 18 S 1.71189 * 120.00162 * 0.02562 * 17 7 6 19 19 N 1.34776 * 119.99741 * 179.97438 * 17 7 6 20 20 C 1.39476 * 120.00000 * 184.13361 * 19 17 7 21 21 C 1.39130 * 119.92260 * 134.52413 * 20 19 17 22 22 C 1.37677 * 120.07870 * 180.02562 * 21 20 19 23 23 C 1.39788 * 119.92339 * 359.97438 * 22 21 20 24 24 C 1.43195 * 120.07892 * 179.97438 * 23 22 21 25 25 N 9.97835 * 134.38304 * 101.60862 * 5 1 2 26 26 C 1.39786 * 119.84067 * 0.25228 * 23 22 21 27 27 C 1.37688 * 119.91772 * 359.50928 * 26 23 22 28 28 H 1.09006 * 109.46846 * 59.99972 * 1 2 3 29 29 H 1.08996 * 109.47667 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47605 * 300.00453 * 1 2 3 31 31 H 1.08999 * 109.46984 * 239.99425 * 2 1 3 32 32 H 1.09006 * 109.46846 * 120.00028 * 2 1 3 33 33 H 1.09000 * 109.46567 * 60.00714 * 6 4 3 34 34 H 1.08997 * 109.47400 * 300.00491 * 6 4 3 35 35 H 1.09001 * 109.47078 * 29.99951 * 8 7 6 36 36 H 1.09001 * 109.47134 * 150.00342 * 8 7 6 37 37 H 0.96995 * 119.99984 * 179.97438 * 12 11 9 38 38 H 0.97001 * 120.00217 * 4.13226 * 19 17 7 39 39 H 1.07996 * 119.95726 * 0.02562 * 21 20 19 40 40 H 1.07997 * 120.03933 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.03945 * 179.74861 * 26 23 22 42 42 H 1.07996 * 119.95593 * 180.21014 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3838 2.8606 0.0001 8 6 6.1152 2.8227 1.2690 9 6 6.4403 4.2287 1.7035 10 1 6.1333 5.0665 1.0951 11 6 7.1307 4.4451 2.8771 12 7 7.5059 3.4247 3.6172 13 14 7.5344 6.1877 3.4154 14 1 6.4308 6.7136 4.2583 15 1 8.7965 6.1842 4.1980 16 1 7.6969 7.0507 2.2178 17 6 6.0568 2.8248 -1.1670 18 16 5.2021 2.8697 -2.6497 19 7 7.4027 2.7548 -1.1669 20 6 8.1038 2.8047 -2.3716 21 6 9.2268 3.6176 -2.4879 22 6 9.9209 3.6698 -3.6757 23 6 9.4964 2.9043 -4.7656 24 6 10.2155 2.9564 -6.0028 25 7 10.7849 3.0061 -6.9828 26 6 8.3648 2.0923 -4.6466 27 6 7.6784 2.0413 -3.4541 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.5845 3.4699 0.8896 34 1 3.5852 3.4690 -0.8904 35 1 5.4999 2.3407 2.0287 36 1 7.0394 2.2597 1.1389 37 1 7.9919 3.5770 4.4426 38 1 7.8839 2.6696 -0.3289 39 1 9.5545 4.2084 -1.6453 40 1 10.7924 4.3013 -3.7654 41 1 8.0316 1.5026 -5.4879 42 1 6.8061 1.4116 -3.3605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245915796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:56 Heat of formation + Delta-G solvation = -15.225740 kcal Electronic energy + Delta-G solvation = -27193.201933 eV Core-core repulsion = 23264.781597 eV Total energy + Delta-G solvation = -3928.420336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80151 -41.15810 -39.73706 -37.96178 -37.46752 -36.28902 -34.93938 -32.75581 -32.13249 -31.42818 -30.58149 -28.91595 -26.15160 -24.86984 -24.09299 -23.94838 -22.64611 -21.90662 -19.91184 -19.63277 -19.21321 -19.04113 -18.52491 -17.63399 -17.50317 -16.82873 -16.66744 -16.45161 -15.64784 -15.47503 -15.28209 -15.12473 -15.01656 -14.64073 -14.48231 -14.30531 -14.26400 -13.84705 -13.69109 -13.56932 -13.47941 -13.21767 -13.12082 -12.92875 -12.82501 -12.67753 -12.49464 -12.42953 -12.19663 -12.02598 -11.86713 -11.66270 -11.52168 -10.72691 -10.59482 -10.06197 -9.43934 -8.93126 -8.32918 -8.28937 -6.50541 -0.43533 0.42521 0.47971 0.77906 1.13596 1.27582 1.43030 1.48348 1.55963 1.64591 1.82779 2.01521 2.24634 2.39023 2.88905 2.93665 3.00596 3.67502 3.89278 3.96441 3.98750 4.03182 4.10836 4.23177 4.33343 4.35215 4.37309 4.48721 4.62055 4.83432 4.88326 4.94022 4.95375 5.09212 5.14242 5.16282 5.30269 5.39354 5.42965 5.47720 5.61102 5.69714 5.77247 5.95171 6.23851 6.46541 6.62132 6.67607 7.23773 8.73492 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.006885 B = 0.004168 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4065.721221 B = 6716.608495 C =10227.284923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.462 3.538 5 O -0.533 6.533 6 C 0.120 3.880 7 N -0.528 5.528 8 C 0.243 3.757 9 C -0.554 4.554 10 H 0.067 0.933 11 C 0.033 3.967 12 N -0.913 5.913 13 Si 0.961 3.039 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.267 1.267 17 C 0.581 3.419 18 S -0.702 6.702 19 N -0.624 5.624 20 C 0.149 3.851 21 C -0.122 4.122 22 C -0.050 4.050 23 C -0.037 4.037 24 C 0.287 3.713 25 N -0.465 5.465 26 C -0.057 4.057 27 C -0.085 4.085 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.272 0.728 38 H 0.422 0.578 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -2.505 -4.966 7.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.304 3.696 5 O -0.422 6.422 6 C -0.005 4.005 7 N -0.231 5.231 8 C 0.121 3.879 9 C -0.592 4.592 10 H 0.085 0.915 11 C -0.169 4.169 12 N -0.551 5.551 13 Si 0.787 3.213 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.191 1.191 17 C 0.220 3.780 18 S -0.570 6.570 19 N -0.250 5.250 20 C 0.054 3.946 21 C -0.143 4.143 22 C -0.071 4.071 23 C -0.042 4.042 24 C -0.027 4.027 25 N -0.141 5.141 26 C -0.079 4.079 27 C -0.107 4.107 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.265 0.735 39 H 0.168 0.832 40 H 0.181 0.819 41 H 0.167 0.833 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.937 -2.765 -7.106 8.581 hybrid contribution 0.621 0.274 2.253 2.353 sum -3.316 -2.491 -4.853 6.383 Atomic orbital electron populations 1.21816 0.89818 1.04450 1.03903 1.23303 0.97412 0.79087 1.02205 1.86473 1.22965 1.33904 1.83687 1.24142 0.81254 0.92848 0.71312 1.90644 1.61230 1.43806 1.46490 1.21393 0.77655 0.91594 1.09863 1.47010 1.06672 1.64124 1.05266 1.19501 0.91887 0.97807 0.78691 1.21485 1.38191 0.91818 1.07731 0.91504 1.25600 0.94637 1.00894 0.95819 1.70004 1.38180 1.32230 1.14655 0.85486 0.77704 0.79640 0.78501 1.20130 1.20892 1.19118 1.21993 0.85509 0.79504 0.91039 1.93071 1.68693 1.78245 1.16995 1.42290 1.03146 1.69108 1.10487 1.17996 0.93731 0.97284 0.85546 1.21071 0.95542 0.98052 0.99628 1.21084 0.99510 0.96835 0.89702 1.16066 0.96655 1.03466 0.87964 1.25654 0.92311 0.92284 0.92474 1.81192 1.10763 1.09962 1.12137 1.21037 0.92192 0.97121 0.97583 1.21335 0.98733 0.98324 0.92331 0.91135 0.88049 0.90976 0.91842 0.91603 0.83169 0.83123 0.94746 0.94995 0.91913 0.73548 0.83169 0.81876 0.83253 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.29 71.98 0.74 -1.44 16 2 C 0.05 1.24 6.19 71.98 0.45 1.69 16 3 O -0.35 -10.14 10.22 -51.41 -0.53 -10.67 16 4 C 0.46 15.58 8.02 71.24 0.57 16.15 16 5 O -0.53 -21.20 16.18 21.97 0.36 -20.84 16 6 C 0.12 3.86 5.76 85.64 0.49 4.35 16 7 N -0.53 -19.43 1.94 -718.51 -1.40 -20.83 16 8 C 0.24 10.10 4.96 85.63 0.42 10.53 16 9 C -0.55 -24.51 9.39 25.60 0.24 -24.27 16 10 H 0.07 2.98 7.81 -2.91 -0.02 2.95 16 11 C 0.03 1.52 5.46 84.65 0.46 1.98 16 12 N -0.91 -44.88 13.29 21.45 0.28 -44.60 16 13 Si 0.96 36.96 29.54 68.60 2.03 38.99 16 14 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16 15 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 16 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 17 C 0.58 21.26 7.55 179.06 1.35 22.61 16 18 S -0.70 -26.99 24.22 -56.49 -1.37 -28.36 16 19 N -0.62 -20.24 5.17 -189.95 -0.98 -21.23 16 20 C 0.15 4.17 5.93 38.35 0.23 4.40 16 21 C -0.12 -2.71 9.95 22.35 0.22 -2.49 16 22 C -0.05 -0.93 9.75 22.51 0.22 -0.71 16 23 C -0.04 -0.77 5.74 -21.29 -0.12 -0.89 16 24 C 0.29 6.58 15.32 88.35 1.35 7.93 16 25 N -0.46 -12.66 18.53 18.98 0.35 -12.31 16 26 C -0.06 -1.28 9.75 22.51 0.22 -1.06 16 27 C -0.08 -2.34 7.84 22.35 0.18 -2.16 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.07 1.55 8.13 -2.38 -0.02 1.53 16 33 H 0.15 4.22 8.07 -2.39 -0.02 4.20 16 34 H 0.15 4.72 6.58 -2.39 -0.02 4.70 16 35 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 36 H 0.03 1.38 6.31 -2.39 -0.02 1.37 16 37 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 38 H 0.42 13.70 6.52 -92.71 -0.60 13.10 16 39 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 40 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.14 4.40 6.10 -8.10 -0.05 4.35 16 Total: -1.00 -60.58 384.93 6.21 -54.38 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.44 Total: 28.85 kcal Atomic # 6 Polarization: 29.59 SS G_CDS: 7.03 Total: 36.61 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -1.74 Total: -98.96 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.17 Total: -31.51 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: -26.99 SS G_CDS: -1.37 Total: -28.36 kcal Total: -60.58 6.21 -54.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245915796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.150 kcal (2) G-P(sol) polarization free energy of solvation -60.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds