Wall clock time and date at job start Wed Apr 1 2020 04:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00113 * 2 1 4 4 N 1.34784 * 119.99961 * 179.97438 * 2 1 3 5 5 C 1.47084 * 121.04407 * 179.97438 * 4 2 1 6 6 C 1.53066 * 108.80019 * 115.29073 * 5 4 2 7 7 C 1.52007 * 109.13972 * 46.46002 * 6 5 4 8 8 C 1.45174 * 123.94798 * 161.25368 * 7 6 5 9 9 C 1.43204 * 123.27576 * 359.88345 * 8 7 6 10 10 N 7.12122 * 128.64408 * 136.62031 * 2 1 3 11 11 C 1.36568 * 113.44955 * 179.85193 * 8 7 6 12 12 N 1.38805 * 124.63951 * 180.02562 * 11 8 7 13 13 C 1.34768 * 120.00640 * 179.97438 * 12 11 8 14 14 O 1.21296 * 119.99568 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00540 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47484 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47358 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99608 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00031 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99742 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00128 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47276 * 90.00225 * 21 19 17 23 23 H 1.48506 * 109.47080 * 210.00430 * 21 19 17 24 24 H 1.48504 * 109.46968 * 329.99653 * 21 19 17 25 25 S 1.70264 * 110.72840 * 0.02562 * 11 8 7 26 26 C 1.33894 * 123.81724 * 341.22525 * 7 6 5 27 27 C 1.47126 * 121.04425 * 359.71904 * 4 2 1 28 28 H 1.08997 * 109.47392 * 239.99793 * 1 2 3 29 29 H 1.08998 * 109.47055 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46932 * 120.00455 * 1 2 3 31 31 H 1.08993 * 109.58376 * 235.08539 * 5 4 2 32 32 H 1.09006 * 109.58146 * 355.49856 * 5 4 2 33 33 H 1.08996 * 109.52525 * 166.36035 * 6 5 4 34 34 H 1.09000 * 109.52777 * 286.49593 * 6 5 4 35 35 H 0.97008 * 119.99393 * 359.97438 * 12 11 8 36 36 H 1.09002 * 109.47137 * 300.00306 * 15 13 12 37 37 H 1.08997 * 109.47275 * 59.99996 * 15 13 12 38 38 H 1.09005 * 109.46937 * 299.99678 * 16 15 13 39 39 H 1.08997 * 109.46996 * 59.99668 * 16 15 13 40 40 H 0.96995 * 119.99549 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.82824 * 343.49148 * 27 4 2 42 42 H 1.09012 * 109.82632 * 104.41183 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6515 -1.1941 0.0000 6 6 4.1339 -1.8211 1.3103 7 6 3.3350 -3.0855 1.5816 8 6 3.7592 -4.1326 2.4934 9 6 4.9839 -4.0811 3.2337 10 7 5.9541 -4.0425 3.8201 11 6 2.8762 -5.1710 2.5769 12 7 3.0498 -6.2919 3.3771 13 6 2.1159 -7.2634 3.3880 14 8 1.1233 -7.1582 2.6988 15 6 2.3047 -8.4805 4.2563 16 6 1.1102 -9.4208 4.0832 17 6 1.2987 -10.6376 4.9520 18 1 2.1824 -10.7311 5.5660 19 6 0.3437 -11.6320 4.9624 20 7 0.5085 -12.6942 5.7203 21 14 -1.1843 -11.4706 3.9001 22 1 -0.9272 -12.0747 2.5681 23 1 -2.3175 -12.1746 4.5526 24 1 -1.5231 -10.0341 3.7352 25 16 1.5332 -4.9030 1.5653 26 6 2.1577 -3.3609 1.0064 27 6 1.4686 -2.4546 0.0073 28 1 -0.3634 -0.5138 0.8899 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 4.0057 -1.7889 -0.8418 32 1 4.0354 -0.1771 -0.0815 33 1 5.1920 -2.0694 1.2275 34 1 3.9884 -1.1147 2.1276 35 1 3.8435 -6.3758 3.9286 36 1 3.2188 -8.9972 3.9639 37 1 2.3784 -8.1744 5.2998 38 1 0.1959 -8.9043 4.3755 39 1 1.0370 -9.7268 3.0397 40 1 -0.1636 -13.3935 5.7279 41 1 0.4306 -2.3013 0.3026 42 1 1.5087 -2.9046 -0.9848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328634719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:00 Heat of formation + Delta-G solvation = -17.134727 kcal Electronic energy + Delta-G solvation = -26712.841151 eV Core-core repulsion = 22784.338036 eV Total energy + Delta-G solvation = -3928.503116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66683 -40.38276 -38.73681 -36.94717 -35.90568 -34.49284 -33.79097 -32.41827 -31.62236 -30.35691 -29.62159 -26.86383 -25.40846 -25.12424 -23.27205 -21.97055 -20.92194 -20.36186 -18.81994 -18.49301 -18.05472 -17.26955 -16.85738 -16.46666 -16.37544 -15.94760 -15.58741 -15.24406 -14.90234 -14.29311 -14.23804 -14.07633 -13.96751 -13.92790 -13.51891 -13.30489 -13.24888 -13.14103 -12.89198 -12.73668 -12.57988 -12.46263 -12.25334 -12.11556 -11.72086 -11.61215 -11.18117 -11.14945 -10.70318 -10.39825 -10.26641 -10.25083 -9.97930 -9.72616 -9.37188 -9.21503 -8.64840 -8.55607 -8.28057 -6.15977 -4.16898 0.44870 0.90977 1.54037 1.63320 2.22611 2.45719 2.49341 2.57471 2.66294 3.26788 3.27523 3.34575 3.41204 3.83504 4.15540 4.31199 4.36091 4.37411 4.60147 4.69113 4.79934 4.83298 4.86337 4.92825 5.00473 5.14261 5.17836 5.18516 5.38137 5.41899 5.50626 5.59728 5.69868 5.73791 5.89984 5.97400 6.00152 6.33115 6.85224 6.94100 7.09848 7.17631 7.34198 7.57986 7.73563 7.78008 8.35865 8.85379 9.45213 10.96548 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.002429 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.578323 B =11522.272726 C =12926.730714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.518 3.482 3 O -0.546 6.546 4 N -0.613 5.613 5 C 0.113 3.887 6 C -0.077 4.077 7 C -0.024 4.024 8 C -0.134 4.134 9 C 0.277 3.723 10 N -0.427 5.427 11 C 0.079 3.921 12 N -0.640 5.640 13 C 0.506 3.494 14 O -0.495 6.495 15 C -0.118 4.118 16 C 0.002 3.998 17 C -0.531 4.531 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.899 5.899 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.261 1.261 25 S 0.348 5.652 26 C -0.296 4.296 27 C 0.192 3.808 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.421 0.579 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 22.678 -13.380 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.307 3.693 3 O -0.423 6.423 4 N -0.347 5.347 5 C -0.009 4.009 6 C -0.116 4.116 7 C -0.037 4.037 8 C -0.155 4.155 9 C -0.038 4.038 10 N -0.104 5.104 11 C -0.144 4.144 12 N -0.284 5.284 13 C 0.297 3.703 14 O -0.369 6.369 15 C -0.158 4.158 16 C -0.036 4.036 17 C -0.569 4.569 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.705 3.295 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.185 1.185 25 S 0.611 5.389 26 C -0.413 4.413 27 C 0.067 3.933 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.258 0.742 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.315 22.269 -13.176 25.909 hybrid contribution 0.783 0.407 0.168 0.898 sum 2.098 22.676 -13.008 26.226 Atomic orbital electron populations 1.21984 0.91450 1.05722 1.04463 1.20813 0.90734 0.82654 0.75051 1.90721 1.70806 1.30832 1.49926 1.48176 1.07096 1.05713 1.73739 1.21575 0.79421 1.03006 0.96931 1.20869 0.99069 0.93076 0.98628 1.19660 0.94256 0.94705 0.95038 1.15698 0.93536 0.97911 1.08337 1.24842 0.92156 0.93982 0.92841 1.81217 1.11221 1.07531 1.10414 1.21941 1.01857 0.91244 0.99375 1.43517 1.25439 1.16778 1.42627 1.22343 0.81115 0.84165 0.82716 1.90580 1.28113 1.76896 1.41302 1.21778 1.04440 0.91136 0.98409 1.19421 0.92238 0.94076 0.97884 1.21020 1.07914 1.02010 1.25935 0.90812 1.24977 0.98172 0.94891 0.95112 1.69905 1.35556 1.08895 1.39347 0.86790 0.82860 0.79139 0.80718 1.20139 1.21322 1.18512 1.84421 1.13028 1.08693 1.32740 1.25353 1.01867 1.05170 1.08929 1.20165 0.95314 0.81068 0.96721 0.89028 0.88848 0.89132 0.90447 0.88206 0.89399 0.89710 0.74160 0.88453 0.88432 0.95474 0.95914 0.92526 0.88222 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 8.75 36.01 0.31 -0.53 16 2 C 0.52 4.45 7.82 -10.98 -0.09 4.37 16 3 O -0.55 -6.94 16.53 5.56 0.09 -6.85 16 4 N -0.61 -4.52 2.94 -173.58 -0.51 -5.03 16 5 C 0.11 0.83 6.37 -3.69 -0.02 0.80 16 6 C -0.08 -0.61 5.96 -27.20 -0.16 -0.77 16 7 C -0.02 -0.22 5.98 -102.75 -0.61 -0.84 16 8 C -0.13 -1.42 5.87 -105.82 -0.62 -2.04 16 9 C 0.28 3.29 14.46 -22.53 -0.33 2.96 16 10 N -0.43 -5.79 18.53 41.77 0.77 -5.02 16 11 C 0.08 0.88 6.95 -14.99 -0.10 0.78 16 12 N -0.64 -7.51 5.36 -11.75 -0.06 -7.57 16 13 C 0.51 7.43 7.79 -10.99 -0.09 7.34 16 14 O -0.49 -8.35 13.41 5.54 0.07 -8.27 16 15 C -0.12 -1.93 5.64 -27.89 -0.16 -2.08 16 16 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 17 C -0.53 -14.09 9.66 -34.44 -0.33 -14.42 16 18 H 0.07 2.07 7.99 -52.48 -0.42 1.65 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 21 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 25 S 0.35 3.46 19.93 -107.50 -2.14 1.32 16 26 C -0.30 -2.39 6.40 -35.45 -0.23 -2.62 16 27 C 0.19 1.09 6.59 -4.47 -0.03 1.06 16 28 H 0.09 0.32 7.55 -51.93 -0.39 -0.07 16 29 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.09 0.25 8.13 -51.93 -0.42 -0.18 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.81 7.03 -51.93 -0.37 0.45 16 33 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.42 4.18 8.12 -40.82 -0.33 3.85 16 36 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.03 0.62 7.16 -51.93 -0.37 0.25 16 39 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.10 0.37 6.23 -51.93 -0.32 0.05 16 42 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -34.12 370.86 -7.86 -41.98 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.14 Total: -2.44 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.64 Total: -4.16 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.97 Total: -43.48 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.17 Total: -15.12 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.14 Total: 1.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.12 -7.86 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328634719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.844 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds