Wall clock time and date at job start Wed Apr 1 2020 04:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00113 * 2 1 4 4 N 1.34784 * 119.99961 * 179.97438 * 2 1 3 5 5 C 1.47084 * 121.04407 * 179.97438 * 4 2 1 6 6 C 1.53066 * 108.80019 * 115.29073 * 5 4 2 7 7 C 1.52007 * 109.13972 * 46.46002 * 6 5 4 8 8 C 1.45174 * 123.94798 * 161.25368 * 7 6 5 9 9 C 1.43204 * 123.27576 * 359.88345 * 8 7 6 10 10 N 7.12122 * 128.64408 * 136.62031 * 2 1 3 11 11 C 1.36568 * 113.44955 * 179.85193 * 8 7 6 12 12 N 1.38805 * 124.63951 * 180.02562 * 11 8 7 13 13 C 1.34768 * 120.00640 * 179.97438 * 12 11 8 14 14 O 1.21296 * 119.99568 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00540 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47484 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47358 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99608 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00031 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99742 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00128 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47276 * 90.00225 * 21 19 17 23 23 H 1.48506 * 109.47080 * 210.00430 * 21 19 17 24 24 H 1.48504 * 109.46968 * 329.99653 * 21 19 17 25 25 S 1.70264 * 110.72840 * 0.02562 * 11 8 7 26 26 C 1.33894 * 123.81724 * 341.22525 * 7 6 5 27 27 C 1.47126 * 121.04425 * 359.71904 * 4 2 1 28 28 H 1.08997 * 109.47392 * 239.99793 * 1 2 3 29 29 H 1.08998 * 109.47055 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46932 * 120.00455 * 1 2 3 31 31 H 1.08993 * 109.58376 * 235.08539 * 5 4 2 32 32 H 1.09006 * 109.58146 * 355.49856 * 5 4 2 33 33 H 1.08996 * 109.52525 * 166.36035 * 6 5 4 34 34 H 1.09000 * 109.52777 * 286.49593 * 6 5 4 35 35 H 0.97008 * 119.99393 * 359.97438 * 12 11 8 36 36 H 1.09002 * 109.47137 * 300.00306 * 15 13 12 37 37 H 1.08997 * 109.47275 * 59.99996 * 15 13 12 38 38 H 1.09005 * 109.46937 * 299.99678 * 16 15 13 39 39 H 1.08997 * 109.46996 * 59.99668 * 16 15 13 40 40 H 0.96995 * 119.99549 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.82824 * 343.49148 * 27 4 2 42 42 H 1.09012 * 109.82632 * 104.41183 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6515 -1.1941 0.0000 6 6 4.1339 -1.8211 1.3103 7 6 3.3350 -3.0855 1.5816 8 6 3.7592 -4.1326 2.4934 9 6 4.9839 -4.0811 3.2337 10 7 5.9541 -4.0425 3.8201 11 6 2.8762 -5.1710 2.5769 12 7 3.0498 -6.2919 3.3771 13 6 2.1159 -7.2634 3.3880 14 8 1.1233 -7.1582 2.6988 15 6 2.3047 -8.4805 4.2563 16 6 1.1102 -9.4208 4.0832 17 6 1.2987 -10.6376 4.9520 18 1 2.1824 -10.7311 5.5660 19 6 0.3437 -11.6320 4.9624 20 7 0.5085 -12.6942 5.7203 21 14 -1.1843 -11.4706 3.9001 22 1 -0.9272 -12.0747 2.5681 23 1 -2.3175 -12.1746 4.5526 24 1 -1.5231 -10.0341 3.7352 25 16 1.5332 -4.9030 1.5653 26 6 2.1577 -3.3609 1.0064 27 6 1.4686 -2.4546 0.0073 28 1 -0.3634 -0.5138 0.8899 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 4.0057 -1.7889 -0.8418 32 1 4.0354 -0.1771 -0.0815 33 1 5.1920 -2.0694 1.2275 34 1 3.9884 -1.1147 2.1276 35 1 3.8435 -6.3758 3.9286 36 1 3.2188 -8.9972 3.9639 37 1 2.3784 -8.1744 5.2998 38 1 0.1959 -8.9043 4.3755 39 1 1.0370 -9.7268 3.0397 40 1 -0.1636 -13.3935 5.7279 41 1 0.4306 -2.3013 0.3026 42 1 1.5087 -2.9046 -0.9848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328634719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:00 Heat of formation + Delta-G solvation = -39.188350 kcal Electronic energy + Delta-G solvation = -26713.797468 eV Core-core repulsion = 22784.338036 eV Total energy + Delta-G solvation = -3929.459432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60432 -41.16543 -39.56697 -37.79629 -36.88777 -35.60680 -35.34238 -33.44692 -32.97537 -31.14033 -30.16378 -28.37607 -26.13539 -26.02396 -24.17475 -23.25223 -21.88897 -21.44177 -19.70100 -19.47802 -19.10244 -18.42923 -17.95636 -17.29512 -17.06025 -17.05224 -16.39063 -16.16275 -16.10332 -15.72377 -15.30809 -15.01890 -14.78502 -14.67789 -14.57991 -14.52545 -14.29584 -14.08566 -13.79572 -13.50687 -13.44101 -13.27323 -13.09217 -12.98709 -12.88924 -12.79004 -12.40479 -12.26279 -12.00281 -11.85382 -11.73737 -11.48627 -11.39668 -10.95260 -10.86548 -10.75762 -9.83679 -9.33491 -9.09264 -8.28909 -6.33413 -0.42060 0.12654 0.78036 0.85943 1.34753 1.38875 1.41216 1.53865 1.55064 1.62446 1.67019 2.03552 2.35404 2.37898 2.96616 3.07437 3.55213 3.61818 3.69049 3.79826 4.00921 4.17655 4.25834 4.27687 4.38020 4.39932 4.47047 4.54565 4.65192 4.67042 4.71540 4.83032 4.90185 4.93613 5.05724 5.13750 5.31501 5.33661 5.40559 5.43021 5.61392 5.85436 6.23886 6.37832 6.40321 6.64852 6.77207 7.13636 7.32214 8.86709 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.002429 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.578323 B =11522.272726 C =12926.730714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.597 6.597 4 N -0.611 5.611 5 C 0.113 3.887 6 C -0.071 4.071 7 C -0.040 4.040 8 C -0.127 4.127 9 C 0.292 3.708 10 N -0.459 5.459 11 C 0.056 3.944 12 N -0.630 5.630 13 C 0.517 3.483 14 O -0.519 6.519 15 C -0.114 4.114 16 C 0.005 3.995 17 C -0.532 4.532 18 H 0.046 0.954 19 C 0.009 3.991 20 N -0.947 5.947 21 Si 0.942 3.058 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.248 1.248 25 S 0.355 5.645 26 C -0.270 4.270 27 C 0.186 3.814 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.428 0.572 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.266 0.734 41 H 0.128 0.872 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.242 23.983 -15.385 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.303 3.697 3 O -0.478 6.478 4 N -0.345 5.345 5 C -0.010 4.010 6 C -0.111 4.111 7 C -0.052 4.052 8 C -0.148 4.148 9 C -0.023 4.023 10 N -0.137 5.137 11 C -0.166 4.166 12 N -0.274 5.274 13 C 0.307 3.693 14 O -0.396 6.396 15 C -0.153 4.153 16 C -0.033 4.033 17 C -0.570 4.570 18 H 0.064 0.936 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.766 3.234 22 H -0.193 1.193 23 H -0.211 1.211 24 H -0.172 1.172 25 S 0.619 5.381 26 C -0.388 4.388 27 C 0.063 3.937 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.267 0.733 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.064 23.582 -15.187 28.050 hybrid contribution 1.299 0.056 0.794 1.523 sum 1.235 23.638 -14.393 27.703 Atomic orbital electron populations 1.22029 0.88326 1.06233 1.06522 1.21535 0.92252 0.82063 0.73890 1.90701 1.72067 1.32622 1.52390 1.48272 1.07127 1.06180 1.72876 1.21571 0.79819 1.02518 0.97095 1.20818 0.99246 0.92354 0.98656 1.19757 0.95042 0.94907 0.95487 1.15822 0.92745 0.98173 1.08096 1.25010 0.92038 0.93001 0.92216 1.81233 1.12266 1.08660 1.11494 1.22066 1.02935 0.91225 1.00398 1.43129 1.25036 1.16478 1.42717 1.21710 0.81259 0.84141 0.82207 1.90577 1.29117 1.77594 1.42263 1.21547 1.02520 0.91393 0.99880 1.19264 0.94411 0.93260 0.96403 1.21411 1.06560 1.03523 1.25495 0.93582 1.25895 1.01671 0.94693 0.96599 1.70046 1.36994 1.10099 1.41602 0.85771 0.78910 0.79699 0.79028 1.19308 1.21148 1.17203 1.84421 1.12361 1.09271 1.32023 1.25580 1.00949 1.04290 1.07997 1.20547 0.96098 0.79742 0.97339 0.87296 0.89317 0.86403 0.88759 0.89479 0.89047 0.90725 0.73259 0.87156 0.87220 0.96038 0.96146 0.92485 0.85470 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 8.75 71.24 0.62 -0.47 16 2 C 0.51 7.82 7.82 87.66 0.69 8.50 16 3 O -0.60 -15.00 16.53 -3.03 -0.05 -15.05 16 4 N -0.61 -7.41 2.94 -821.47 -2.42 -9.83 16 5 C 0.11 1.46 6.37 86.29 0.55 2.01 16 6 C -0.07 -1.03 5.96 30.29 0.18 -0.84 16 7 C -0.04 -0.65 5.98 -18.65 -0.11 -0.76 16 8 C -0.13 -2.48 5.87 -20.64 -0.12 -2.60 16 9 C 0.29 6.63 14.46 88.35 1.28 7.91 16 10 N -0.46 -12.20 18.53 18.98 0.35 -11.84 16 11 C 0.06 1.14 6.95 83.20 0.58 1.72 16 12 N -0.63 -13.70 5.36 -309.48 -1.66 -15.36 16 13 C 0.52 14.27 7.79 87.66 0.68 14.95 16 14 O -0.52 -16.51 13.41 -3.08 -0.04 -16.55 16 15 C -0.11 -3.57 5.64 29.85 0.17 -3.40 16 16 C 0.00 0.20 3.33 29.85 0.10 0.30 16 17 C -0.53 -28.45 9.66 25.60 0.25 -28.20 16 18 H 0.05 2.64 7.99 -2.91 -0.02 2.62 16 19 C 0.01 0.50 5.47 84.65 0.46 0.96 16 20 N -0.95 -57.24 13.96 21.45 0.30 -56.94 16 21 Si 0.94 43.03 27.47 68.60 1.88 44.91 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 25 S 0.35 6.09 19.93 -56.49 -1.13 4.97 16 26 C -0.27 -3.51 6.40 24.94 0.16 -3.35 16 27 C 0.19 1.35 6.59 85.76 0.57 1.92 16 28 H 0.11 0.34 7.55 -2.39 -0.02 0.32 16 29 H 0.09 0.69 8.12 -2.39 -0.02 0.67 16 30 H 0.12 0.12 8.13 -2.38 -0.02 0.10 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.39 7.03 -2.38 -0.02 1.37 16 33 H 0.09 1.24 8.07 -2.39 -0.02 1.23 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.43 7.87 8.12 -92.70 -0.75 7.12 16 36 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.11 3.15 8.14 -2.39 -0.02 3.14 16 38 H 0.02 0.94 7.16 -2.38 -0.02 0.93 16 39 H 0.02 0.88 7.53 -2.39 -0.02 0.86 16 40 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.13 0.30 6.23 -2.39 -0.01 0.29 16 42 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 Total: -1.00 -75.43 370.86 3.57 -71.86 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.28 Total: 5.19 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 6.05 Total: -1.35 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -3.43 Total: -93.98 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.09 Total: -31.60 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.13 Total: 4.97 kcal Total: -75.43 3.57 -71.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328634719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.674 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds