Wall clock time and date at job start Wed Apr 1 2020 04:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45193 * 109.47016 * 2 1 4 4 C 1.34749 * 116.99838 * 179.97438 * 3 2 1 5 5 O 1.21500 * 120.00233 * 0.02562 * 4 3 2 6 6 C 1.47511 * 119.99949 * 180.02562 * 4 3 2 7 7 C 1.41581 * 126.44942 * 179.71980 * 6 4 3 8 8 C 1.35346 * 105.55674 * 179.84489 * 7 6 4 9 9 N 1.35875 * 107.14301 * 0.41217 * 8 7 6 10 10 C 1.40058 * 124.94970 * 179.76663 * 9 8 7 11 11 C 1.38980 * 119.99297 * 179.97438 * 10 9 8 12 12 C 1.37897 * 120.03870 * 180.02562 * 11 10 9 13 13 C 1.39182 * 120.03187 * 359.94667 * 12 11 10 14 14 N 1.39397 * 120.00681 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99986 * 33.49948 * 14 13 12 16 16 O 1.21768 * 119.99949 * 5.28343 * 15 14 13 17 17 C 1.41790 * 120.00130 * 185.28123 * 15 14 13 18 18 H 1.07996 * 119.99600 * 359.97438 * 17 15 14 19 19 C 1.40133 * 120.00064 * 180.02562 * 17 15 14 20 20 N 1.30633 * 120.00026 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00007 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47280 * 59.99544 * 21 19 17 23 23 H 1.48497 * 109.46926 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47045 * 299.99708 * 21 19 17 25 25 C 1.39086 * 119.98915 * 0.02674 * 13 12 11 26 26 C 1.38118 * 119.96357 * 359.74346 * 25 13 12 27 27 F 1.35102 * 120.01856 * 180.27017 * 26 25 13 28 28 N 1.28479 * 110.09571 * 359.72550 * 9 8 7 29 29 H 1.09004 * 109.47255 * 59.99665 * 1 2 3 30 30 H 1.08996 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46581 * 299.99564 * 1 2 3 32 32 H 1.09001 * 109.46581 * 240.00436 * 2 1 3 33 33 H 1.08996 * 109.47327 * 120.00629 * 2 1 3 34 34 H 1.08002 * 127.22108 * 359.97438 * 7 6 4 35 35 H 1.08002 * 126.42655 * 180.13590 * 8 7 6 36 36 H 1.08000 * 119.97875 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.99049 * 179.97438 * 12 11 10 38 38 H 0.97000 * 120.00058 * 213.50227 * 14 13 12 39 39 H 0.96997 * 120.00421 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.01965 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 0.0005 5 8 4.0900 0.5819 0.0005 6 6 3.9137 2.9086 0.0011 7 6 5.2876 3.2505 0.0073 8 6 5.3249 4.6035 0.0018 9 7 4.0380 5.0396 0.0022 10 6 3.6466 6.3844 0.0022 11 6 2.2967 6.7151 0.0020 12 6 1.9104 8.0389 0.0014 13 6 2.8719 9.0452 0.0021 14 7 2.4807 10.3831 0.0020 15 6 1.3570 10.7567 0.6457 16 8 0.7356 9.9448 1.3070 17 6 0.8984 12.0952 0.5528 18 1 1.4498 12.8154 -0.0334 19 6 -0.2696 12.4838 1.2224 20 7 -0.9362 11.6127 1.9319 21 14 -0.8733 14.2473 1.1006 22 1 -1.1470 14.5798 -0.3205 23 1 -2.1199 14.3995 1.8931 24 1 0.1668 15.1644 1.6321 25 6 4.2231 8.7156 0.0028 26 6 4.6098 7.3897 0.0082 27 9 5.9220 7.0683 0.0143 28 7 3.2326 4.0386 0.0018 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 6.1292 2.5738 0.0129 35 1 6.2112 5.2206 0.0021 36 1 1.5500 5.9349 0.0016 37 1 0.8612 8.2950 0.0009 38 1 3.0171 11.0453 -0.4613 39 1 -1.7445 11.8817 2.3957 40 1 4.9696 9.4961 0.0037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362758127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:24 Heat of formation + Delta-G solvation = -48.177775 kcal Electronic energy + Delta-G solvation = -28733.590264 eV Core-core repulsion = 24237.527845 eV Total energy + Delta-G solvation = -4496.062419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.21123 -42.88340 -40.27570 -39.49423 -37.34792 -36.68422 -34.37464 -32.88174 -32.38984 -31.82620 -31.06856 -30.36176 -28.74591 -26.80303 -25.08027 -23.32748 -23.15262 -22.13365 -21.55618 -20.42382 -20.28952 -18.33604 -17.88732 -17.76617 -17.29008 -16.83385 -16.56454 -16.25615 -16.13716 -15.61935 -15.39362 -15.23234 -14.40157 -14.23895 -14.18579 -14.07856 -13.69790 -13.54260 -13.32342 -12.96373 -12.87314 -12.44225 -12.22355 -12.12796 -12.02655 -11.80946 -11.54357 -11.42325 -11.22705 -10.95241 -10.84597 -10.83561 -10.70304 -10.51883 -10.37193 -9.38425 -9.23358 -8.94116 -8.79332 -8.00190 -7.34366 -6.56867 -5.11608 0.72908 1.32790 1.47442 2.11774 2.23324 2.65791 2.96159 3.02673 3.04382 3.07138 3.70470 3.80054 3.95027 4.14676 4.25905 4.38832 4.66767 4.71968 4.72460 4.79393 4.98753 5.04045 5.32175 5.37586 5.42658 5.49019 5.51164 5.56804 5.57810 5.67201 5.78363 5.80956 6.10329 6.18521 6.26783 6.27138 6.59747 6.79363 6.93218 7.06150 7.52105 7.54460 7.73510 7.85386 7.86382 8.60814 8.97163 10.15264 10.34094 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.002278 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.218013 B =12291.008254 C =14065.613979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.342 6.342 4 C 0.563 3.437 5 O -0.505 6.505 6 C -0.015 4.015 7 C -0.172 4.172 8 C -0.026 4.026 9 N -0.205 5.205 10 C 0.033 3.967 11 C -0.052 4.052 12 C -0.120 4.120 13 C 0.238 3.762 14 N -0.692 5.692 15 C 0.537 3.463 16 O -0.562 6.562 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.087 3.913 20 N -0.742 5.742 21 Si 0.916 3.084 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.197 4.197 26 C 0.125 3.875 27 F -0.134 7.134 28 N -0.229 5.229 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.168 0.832 35 H 0.201 0.799 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.398 0.602 39 H 0.276 0.724 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 -12.373 -5.143 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.257 6.257 4 C 0.406 3.594 5 O -0.391 6.391 6 C -0.172 4.172 7 C -0.199 4.199 8 C -0.166 4.166 9 N 0.013 4.987 10 C -0.060 4.060 11 C -0.072 4.072 12 C -0.142 4.142 13 C 0.135 3.865 14 N -0.334 5.334 15 C 0.348 3.652 16 O -0.445 6.445 17 C -0.567 4.567 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.369 5.369 21 Si 0.739 3.261 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.221 4.221 26 C 0.103 3.897 27 F -0.113 7.113 28 N -0.065 5.065 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.186 0.814 35 H 0.218 0.782 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.232 0.768 39 H 0.087 0.913 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.016 -12.738 -4.523 14.795 hybrid contribution 1.199 0.695 -0.195 1.400 sum 7.215 -12.043 -4.718 14.810 Atomic orbital electron populations 1.21811 0.92387 1.02890 1.03941 1.23083 0.95598 0.79881 1.02615 1.86672 1.23134 1.32243 1.83678 1.19464 0.80644 0.87027 0.72270 1.90844 1.60708 1.40944 1.46633 1.20731 0.92225 0.90006 1.14233 1.21749 0.95725 0.94267 1.08190 1.23827 0.89328 0.95743 1.07661 1.42606 1.04271 1.04229 1.47601 1.17432 0.94385 0.77587 1.16553 1.20748 0.92232 0.97531 0.96701 1.21429 1.02007 0.89863 1.00860 1.17848 0.90802 0.87154 0.90650 1.44457 1.29296 1.04326 1.55318 1.17154 0.78357 0.90160 0.79551 1.90687 1.56155 1.54027 1.43597 1.20021 1.09815 0.94960 1.31954 0.90916 1.25780 0.95656 0.99194 0.93110 1.69973 1.12484 1.34747 1.19701 0.86280 0.78611 0.81825 0.79334 1.18921 1.20219 1.18956 1.20649 0.96314 0.93757 1.11353 1.16773 0.76104 0.91973 1.04833 1.91337 1.33006 1.92779 1.94143 1.73706 1.22098 0.93586 1.17150 0.91290 0.90202 0.91236 0.91116 0.91094 0.81413 0.78221 0.83499 0.82363 0.76806 0.91257 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.78 16 2 C 0.06 0.61 6.20 37.16 0.23 0.84 16 3 O -0.34 -4.65 10.23 -40.63 -0.42 -5.07 16 4 C 0.56 8.31 7.96 34.51 0.27 8.59 16 5 O -0.51 -7.87 16.71 -19.27 -0.32 -8.19 16 6 C -0.02 -0.23 7.16 -82.77 -0.59 -0.83 16 7 C -0.17 -2.25 10.80 -39.34 -0.42 -2.68 16 8 C -0.03 -0.35 10.52 -16.79 -0.18 -0.53 16 9 N -0.20 -3.19 3.51 -10.45 -0.04 -3.23 16 10 C 0.03 0.52 6.67 -83.46 -0.56 -0.03 16 11 C -0.05 -0.86 9.58 -39.43 -0.38 -1.24 16 12 C -0.12 -2.23 8.64 -39.36 -0.34 -2.57 16 13 C 0.24 4.27 6.27 -83.75 -0.53 3.75 16 14 N -0.69 -13.45 5.31 -12.41 -0.07 -13.52 16 15 C 0.54 13.38 7.30 -14.90 -0.11 13.28 16 16 O -0.56 -15.95 12.56 5.13 0.06 -15.89 16 17 C -0.53 -13.21 9.31 -37.51 -0.35 -13.55 16 18 H 0.07 1.61 7.85 -52.49 -0.41 1.20 16 19 C 0.09 2.15 5.50 -17.35 -0.10 2.06 16 20 N -0.74 -19.97 11.73 55.55 0.65 -19.32 16 21 Si 0.92 17.98 29.56 -169.99 -5.02 12.96 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 25 C -0.20 -2.94 9.94 -39.31 -0.39 -3.33 16 26 C 0.13 1.84 7.21 -39.26 -0.28 1.56 16 27 F -0.13 -1.74 13.81 2.25 0.03 -1.71 16 28 N -0.23 -3.75 11.16 33.41 0.37 -3.37 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.20 2.18 5.60 -52.49 -0.29 1.88 16 36 H 0.15 2.33 7.64 -52.49 -0.40 1.93 16 37 H 0.16 3.34 6.41 -52.49 -0.34 3.01 16 38 H 0.40 6.37 8.77 -40.82 -0.36 6.02 16 39 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 40 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -31.28 360.64 -6.54 -37.82 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -3.89 Total: 9.53 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -3.33 Total: 4.54 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.92 Total: -39.44 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.67 Total: -29.14 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.03 Total: -1.71 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.02 Total: 12.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.28 -6.54 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362758127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.357 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds