Wall clock time and date at job start Wed Apr 1 2020 04:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45193 * 109.47016 * 2 1 4 4 C 1.34749 * 116.99838 * 179.97438 * 3 2 1 5 5 O 1.21500 * 120.00233 * 0.02562 * 4 3 2 6 6 C 1.47511 * 119.99949 * 180.02562 * 4 3 2 7 7 C 1.41581 * 126.44942 * 179.71980 * 6 4 3 8 8 C 1.35346 * 105.55674 * 179.84489 * 7 6 4 9 9 N 1.35875 * 107.14301 * 0.41217 * 8 7 6 10 10 C 1.40058 * 124.94970 * 179.76663 * 9 8 7 11 11 C 1.38980 * 119.99297 * 179.97438 * 10 9 8 12 12 C 1.37897 * 120.03870 * 180.02562 * 11 10 9 13 13 C 1.39182 * 120.03187 * 359.94667 * 12 11 10 14 14 N 1.39397 * 120.00681 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99986 * 33.49948 * 14 13 12 16 16 O 1.21768 * 119.99949 * 5.28343 * 15 14 13 17 17 C 1.41790 * 120.00130 * 185.28123 * 15 14 13 18 18 H 1.07996 * 119.99600 * 359.97438 * 17 15 14 19 19 C 1.40133 * 120.00064 * 180.02562 * 17 15 14 20 20 N 1.30633 * 120.00026 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00007 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47280 * 59.99544 * 21 19 17 23 23 H 1.48497 * 109.46926 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47045 * 299.99708 * 21 19 17 25 25 C 1.39086 * 119.98915 * 0.02674 * 13 12 11 26 26 C 1.38118 * 119.96357 * 359.74346 * 25 13 12 27 27 F 1.35102 * 120.01856 * 180.27017 * 26 25 13 28 28 N 1.28479 * 110.09571 * 359.72550 * 9 8 7 29 29 H 1.09004 * 109.47255 * 59.99665 * 1 2 3 30 30 H 1.08996 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46581 * 299.99564 * 1 2 3 32 32 H 1.09001 * 109.46581 * 240.00436 * 2 1 3 33 33 H 1.08996 * 109.47327 * 120.00629 * 2 1 3 34 34 H 1.08002 * 127.22108 * 359.97438 * 7 6 4 35 35 H 1.08002 * 126.42655 * 180.13590 * 8 7 6 36 36 H 1.08000 * 119.97875 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.99049 * 179.97438 * 12 11 10 38 38 H 0.97000 * 120.00058 * 213.50227 * 14 13 12 39 39 H 0.96997 * 120.00421 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.01965 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 0.0005 5 8 4.0900 0.5819 0.0005 6 6 3.9137 2.9086 0.0011 7 6 5.2876 3.2505 0.0073 8 6 5.3249 4.6035 0.0018 9 7 4.0380 5.0396 0.0022 10 6 3.6466 6.3844 0.0022 11 6 2.2967 6.7151 0.0020 12 6 1.9104 8.0389 0.0014 13 6 2.8719 9.0452 0.0021 14 7 2.4807 10.3831 0.0020 15 6 1.3570 10.7567 0.6457 16 8 0.7356 9.9448 1.3070 17 6 0.8984 12.0952 0.5528 18 1 1.4498 12.8154 -0.0334 19 6 -0.2696 12.4838 1.2224 20 7 -0.9362 11.6127 1.9319 21 14 -0.8733 14.2473 1.1006 22 1 -1.1470 14.5798 -0.3205 23 1 -2.1199 14.3995 1.8931 24 1 0.1668 15.1644 1.6321 25 6 4.2231 8.7156 0.0028 26 6 4.6098 7.3897 0.0082 27 9 5.9220 7.0683 0.0143 28 7 3.2326 4.0386 0.0018 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 6.1292 2.5738 0.0129 35 1 6.2112 5.2206 0.0021 36 1 1.5500 5.9349 0.0016 37 1 0.8612 8.2950 0.0009 38 1 3.0171 11.0453 -0.4613 39 1 -1.7445 11.8817 2.3957 40 1 4.9696 9.4961 0.0037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362758127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:24 Heat of formation + Delta-G solvation = -66.790134 kcal Electronic energy + Delta-G solvation = -28734.397356 eV Core-core repulsion = 24237.527845 eV Total energy + Delta-G solvation = -4496.869512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.35538 -44.03392 -41.37635 -40.97323 -38.96153 -37.76352 -35.89943 -34.66516 -33.82676 -32.69410 -32.20952 -31.62626 -30.19039 -28.47532 -26.28299 -24.62813 -24.16537 -23.30153 -22.77367 -21.90116 -21.52010 -19.61963 -19.46810 -18.89783 -18.66434 -17.90728 -17.71698 -17.66404 -17.37027 -17.16576 -16.64865 -16.51539 -15.88407 -15.58611 -15.28000 -15.10219 -14.97486 -14.80897 -14.58794 -14.45494 -13.90385 -13.67528 -13.57870 -13.38129 -13.16666 -13.00448 -12.76423 -12.74649 -12.68063 -12.55471 -12.13270 -12.07083 -11.96906 -11.75528 -11.57526 -10.97565 -10.54335 -10.37595 -10.13925 -9.87660 -8.80343 -8.41205 -7.04415 -0.53580 0.02323 0.30221 0.98783 1.08580 1.42511 1.43227 1.56691 1.62867 1.92992 2.18650 2.25655 2.51132 2.63350 2.90057 3.12194 3.50440 3.61474 3.70015 3.82183 3.99147 4.03247 4.06612 4.11075 4.31066 4.35928 4.46520 4.48929 4.53938 4.77044 4.79867 4.89616 4.99165 5.05762 5.15111 5.20819 5.25282 5.32381 5.41025 5.71882 5.84928 6.09985 6.16267 6.40780 6.72220 6.72517 7.29445 8.32475 8.52132 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.002278 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.218013 B =12291.008254 C =14065.613979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.564 3.436 5 O -0.517 6.517 6 C -0.027 4.027 7 C -0.166 4.166 8 C -0.020 4.020 9 N -0.218 5.218 10 C 0.039 3.961 11 C -0.052 4.052 12 C -0.135 4.135 13 C 0.215 3.785 14 N -0.685 5.685 15 C 0.528 3.472 16 O -0.608 6.608 17 C -0.558 4.558 18 H 0.096 0.904 19 C 0.033 3.967 20 N -0.797 5.797 21 Si 0.998 3.002 22 H -0.253 1.253 23 H -0.276 1.276 24 H -0.253 1.253 25 C -0.172 4.172 26 C 0.137 3.863 27 F -0.117 7.117 28 N -0.258 5.258 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.195 0.805 35 H 0.227 0.773 36 H 0.146 0.854 37 H 0.123 0.877 38 H 0.415 0.585 39 H 0.280 0.720 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.781 -11.997 -5.847 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.407 3.593 5 O -0.404 6.404 6 C -0.184 4.184 7 C -0.193 4.193 8 C -0.159 4.159 9 N -0.001 5.001 10 C -0.054 4.054 11 C -0.072 4.072 12 C -0.157 4.157 13 C 0.114 3.886 14 N -0.329 5.329 15 C 0.338 3.662 16 O -0.495 6.495 17 C -0.593 4.593 18 H 0.114 0.886 19 C -0.186 4.186 20 N -0.425 5.425 21 Si 0.817 3.183 22 H -0.177 1.177 23 H -0.201 1.201 24 H -0.176 1.176 25 C -0.195 4.195 26 C 0.115 3.885 27 F -0.095 7.095 28 N -0.095 5.095 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.212 0.788 35 H 0.243 0.757 36 H 0.164 0.836 37 H 0.141 0.859 38 H 0.252 0.748 39 H 0.090 0.910 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.257 -12.387 -5.265 15.790 hybrid contribution 0.620 0.335 -0.013 0.705 sum 8.877 -12.052 -5.278 15.872 Atomic orbital electron populations 1.21849 0.90671 1.04574 1.03449 1.23435 0.96961 0.78304 1.03319 1.86673 1.22561 1.34559 1.83260 1.19473 0.80991 0.86824 0.72005 1.90825 1.61017 1.41178 1.47390 1.21090 0.93387 0.89964 1.13938 1.22132 0.95513 0.94623 1.07026 1.24310 0.88987 0.96150 1.06422 1.42676 1.05112 1.03813 1.48500 1.17497 0.94199 0.78405 1.15291 1.20609 0.93094 0.96607 0.96934 1.21143 1.00701 0.91186 1.02673 1.17927 0.92022 0.86113 0.92506 1.43870 1.28295 1.05474 1.55236 1.17418 0.79212 0.90191 0.79346 1.90654 1.58049 1.55188 1.45592 1.20572 1.10575 0.95611 1.32516 0.88593 1.26981 0.95500 1.04097 0.91996 1.70132 1.13391 1.37611 1.21372 0.85041 0.78023 0.75434 0.79766 1.17711 1.20127 1.17649 1.20814 0.95324 0.94687 1.08671 1.16624 0.76579 0.91427 1.03886 1.91378 1.31624 1.92607 1.93882 1.73681 1.23120 0.94202 1.18475 0.91649 0.87387 0.91827 0.90315 0.90483 0.78772 0.75730 0.83650 0.85912 0.74836 0.90991 0.80383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.29 71.98 0.74 -1.37 16 2 C 0.05 1.00 6.20 71.98 0.45 1.45 16 3 O -0.35 -9.66 10.23 -56.60 -0.58 -10.23 16 4 C 0.56 16.39 7.96 70.27 0.56 16.95 16 5 O -0.52 -15.62 16.71 19.84 0.33 -15.29 16 6 C -0.03 -0.80 7.16 42.40 0.30 -0.49 16 7 C -0.17 -3.98 10.80 22.43 0.24 -3.74 16 8 C -0.02 -0.48 10.52 83.40 0.88 0.40 16 9 N -0.22 -6.54 3.51 -186.96 -0.66 -7.20 16 10 C 0.04 1.19 6.67 38.24 0.26 1.45 16 11 C -0.05 -1.79 9.58 22.37 0.21 -1.57 16 12 C -0.14 -5.28 8.64 22.42 0.19 -5.08 16 13 C 0.22 7.73 6.27 38.37 0.24 7.97 16 14 N -0.69 -26.78 5.31 -311.36 -1.65 -28.43 16 15 C 0.53 27.14 7.30 85.12 0.62 27.76 16 16 O -0.61 -36.44 12.56 -4.56 -0.06 -36.50 16 17 C -0.56 -27.96 9.31 23.61 0.22 -27.74 16 18 H 0.10 4.17 7.85 -2.91 -0.02 4.14 16 19 C 0.03 1.67 5.50 85.33 0.47 2.14 16 20 N -0.80 -44.59 11.73 21.85 0.26 -44.33 16 21 Si 1.00 36.70 29.56 68.60 2.03 38.73 16 22 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 23 H -0.28 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 25 C -0.17 -4.74 9.94 22.44 0.22 -4.51 16 26 C 0.14 3.69 7.21 22.48 0.16 3.85 16 27 F -0.12 -2.57 13.81 44.97 0.62 -1.95 16 28 N -0.26 -8.41 11.16 -48.21 -0.54 -8.95 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.20 3.49 8.06 -2.91 -0.02 3.46 16 35 H 0.23 4.03 5.60 -2.91 -0.02 4.02 16 36 H 0.15 4.92 7.64 -2.91 -0.02 4.90 16 37 H 0.12 5.69 6.41 -2.91 -0.02 5.67 16 38 H 0.41 12.89 8.77 -92.71 -0.81 12.08 16 39 H 0.28 14.22 8.29 -92.71 -0.77 13.45 16 40 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -70.95 360.64 5.84 -65.12 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.31 Total: 31.56 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 5.77 Total: 17.46 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -2.59 Total: -88.90 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -0.30 Total: -62.02 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.62 Total: -1.95 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -70.95 5.84 -65.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362758127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.673 kcal (2) G-P(sol) polarization free energy of solvation -70.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds