Wall clock time and date at job start Wed Apr 1 2020 04:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21266 * 120.00231 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99541 * 359.97438 * 3 2 1 6 6 N 1.46902 * 109.46924 * 180.02562 * 5 3 2 7 7 C 1.47485 * 111.00044 * 265.97440 * 6 5 3 8 8 C 1.53513 * 87.93275 * 221.29566 * 7 6 5 9 9 O 1.42897 * 114.16918 * 272.37741 * 8 7 6 10 10 C 1.50695 * 114.34833 * 139.68013 * 8 7 6 11 11 H 1.08005 * 120.00289 * 266.08057 * 10 8 7 12 12 C 1.37878 * 119.99992 * 86.07063 * 10 8 7 13 13 N 1.31516 * 120.00327 * 180.02562 * 12 10 8 14 14 Si 1.86799 * 119.99845 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47239 * 89.99755 * 14 12 10 16 16 H 1.48504 * 109.47002 * 209.99676 * 14 12 10 17 17 H 1.48503 * 109.47218 * 329.99477 * 14 12 10 18 18 C 1.47475 * 111.00239 * 170.00131 * 6 5 3 19 19 C 1.38545 * 120.00139 * 179.97438 * 2 1 3 20 20 N 1.28785 * 124.81612 * 179.70095 * 19 2 1 21 21 C 1.34742 * 117.92147 * 179.84339 * 20 19 2 22 22 C 1.41134 * 128.75505 * 180.20686 * 21 20 19 23 23 C 1.37166 * 120.43328 * 180.29838 * 22 21 20 24 24 C 1.38737 * 120.61102 * 359.94206 * 23 22 21 25 25 C 1.37693 * 119.98677 * 0.02562 * 24 23 22 26 26 C 1.39295 * 120.19217 * 0.02562 * 25 24 23 27 27 S 1.75809 * 124.81200 * 0.02562 * 19 2 1 28 28 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 31 31 H 1.08996 * 109.47057 * 299.99739 * 5 3 2 32 32 H 1.08996 * 109.47084 * 60.00703 * 5 3 2 33 33 H 1.09001 * 113.47155 * 336.05825 * 7 6 5 34 34 H 1.08999 * 113.47729 * 106.52865 * 7 6 5 35 35 H 0.96695 * 113.99892 * 273.83661 * 9 8 7 36 36 H 0.96997 * 120.00180 * 180.02562 * 13 12 10 37 37 H 1.09000 * 113.47759 * 253.47465 * 18 6 5 38 38 H 1.09004 * 113.47516 * 23.87213 * 18 6 5 39 39 H 1.07995 * 119.78173 * 0.25958 * 22 21 20 40 40 H 1.08000 * 119.69453 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.01153 * 180.02562 * 24 23 22 42 42 H 1.07995 * 119.90652 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3400 3.5889 -0.0011 7 6 2.6100 4.0540 1.3722 8 6 2.5535 5.4917 0.8369 9 8 3.8021 5.9822 0.3445 10 6 1.8480 6.4656 1.7451 11 1 0.7973 6.6717 1.6040 12 6 2.5440 7.0934 2.7563 13 7 1.9283 7.9429 3.5493 14 14 4.3614 6.7372 3.0001 15 1 5.1652 7.6899 2.1929 16 1 4.7076 6.8903 4.4361 17 1 4.6564 5.3482 2.5651 18 6 1.6529 4.8716 -0.2407 19 6 2.1577 -1.1998 0.0005 20 7 3.4410 -1.3079 -0.0049 21 6 3.9698 -2.5472 -0.0003 22 6 5.3289 -2.9279 -0.0006 23 6 5.6789 -4.2541 -0.0014 24 6 4.7047 -5.2419 -0.0008 25 6 3.3723 -4.8945 0.0001 26 6 2.9983 -3.5527 -0.0001 27 16 1.4096 -2.7908 0.0006 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 0.7591 2.5298 -0.8908 32 1 0.7585 2.5302 0.8892 33 1 1.8100 3.8206 2.0748 34 1 3.5941 3.7669 1.7423 35 1 4.3673 6.3722 1.0252 36 1 2.4179 8.3848 4.2604 37 1 1.8258 5.2773 -1.2375 38 1 0.5972 4.8560 0.0305 39 1 6.0982 -2.1700 -0.0007 40 1 6.7226 -4.5320 -0.0021 41 1 4.9912 -6.2832 -0.0011 42 1 2.6151 -5.6644 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364388232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:27 Heat of formation + Delta-G solvation = 32.389385 kcal Electronic energy + Delta-G solvation = -27375.924404 eV Core-core repulsion = 23449.568815 eV Total energy + Delta-G solvation = -3926.355589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.99825 -41.24546 -40.47195 -37.94727 -36.73396 -36.55663 -34.55307 -32.03738 -31.88237 -30.47050 -28.52513 -27.98432 -26.93040 -26.15394 -24.60841 -23.56818 -22.81582 -20.97248 -20.36718 -19.67404 -19.33183 -18.51379 -18.22311 -17.82246 -17.46965 -16.97636 -16.71165 -16.28977 -16.23207 -15.76086 -15.44508 -15.30154 -15.04003 -14.84362 -14.78968 -14.64150 -14.14672 -13.93287 -13.72198 -13.65076 -13.40706 -13.19474 -12.97537 -12.84311 -12.79066 -12.47321 -12.18076 -11.94746 -11.93854 -11.40508 -11.16967 -11.14903 -10.98722 -10.96557 -10.45403 -10.40913 -9.76990 -9.21661 -9.10187 -8.47389 -6.54830 -0.63473 -0.25029 0.12649 0.46217 1.11801 1.16956 1.27106 1.31476 1.42610 1.71069 2.12089 2.69819 2.75167 2.84036 3.11677 3.45876 3.56097 3.65218 3.83929 3.98077 4.06373 4.09656 4.11378 4.24781 4.28613 4.32027 4.41018 4.48849 4.55493 4.69016 4.77610 4.87706 4.90059 4.94210 5.02643 5.15612 5.25152 5.26771 5.29687 5.40250 5.63130 5.82236 5.99494 6.10886 6.50619 6.65853 6.73033 6.95242 7.12723 8.67710 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.002517 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.546714 B =11122.381112 C =11992.290699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.531 5.531 3 C 0.506 3.494 4 O -0.502 6.502 5 C 0.007 3.993 6 N -0.470 5.470 7 C -0.023 4.023 8 C 0.181 3.819 9 O -0.558 6.558 10 C -0.534 4.534 11 H 0.067 0.933 12 C 0.032 3.968 13 N -0.921 5.921 14 Si 0.909 3.091 15 H -0.254 1.254 16 H -0.282 1.282 17 H -0.253 1.253 18 C 0.033 3.967 19 C 0.319 3.681 20 N -0.528 5.528 21 C 0.073 3.927 22 C -0.102 4.102 23 C -0.092 4.092 24 C -0.101 4.101 25 C -0.068 4.068 26 C -0.207 4.207 27 S 0.118 5.882 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.144 0.856 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.348 0.652 36 H 0.272 0.728 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 -29.228 -7.261 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.263 5.263 3 C 0.292 3.708 4 O -0.371 6.371 5 C -0.124 4.124 6 N -0.193 5.193 7 C -0.153 4.153 8 C 0.140 3.860 9 O -0.369 6.369 10 C -0.572 4.572 11 H 0.085 0.915 12 C -0.170 4.170 13 N -0.559 5.559 14 Si 0.736 3.264 15 H -0.180 1.180 16 H -0.208 1.208 17 H -0.178 1.178 18 C -0.095 4.095 19 C -0.055 4.055 20 N -0.250 5.250 21 C -0.046 4.046 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.091 4.091 26 C -0.326 4.326 27 S 0.369 5.631 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.161 0.839 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.200 0.800 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.139 0.861 40 H 0.182 0.818 41 H 0.193 0.807 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.302 -29.269 -8.120 30.678 hybrid contribution 1.380 0.867 1.529 2.234 sum -2.922 -28.402 -6.591 29.303 Atomic orbital electron populations 1.22657 0.72964 1.07056 1.05950 1.45622 1.09648 1.01058 1.69935 1.21609 0.88283 0.85376 0.75535 1.90802 1.15855 1.86410 1.44008 1.22820 0.94866 0.88081 1.06669 1.68728 1.31202 1.01719 1.17656 1.24880 1.00828 0.98153 0.91426 1.20278 0.82597 0.89793 0.93296 1.86466 1.31138 1.80469 1.38836 1.21457 0.97864 1.24669 1.13214 0.91525 1.25656 1.02043 0.94078 0.95174 1.69963 1.38381 1.28305 1.19263 0.86466 0.81656 0.80258 0.78019 1.17974 1.20842 1.17848 1.23928 0.97697 0.87829 1.00026 1.24429 0.90033 0.92159 0.98846 1.66398 1.10775 1.25359 1.22436 1.19344 0.96488 0.85010 1.03773 1.20934 0.91921 0.98123 1.01330 1.21363 1.02101 0.90540 0.97246 1.21602 0.91077 1.01465 0.98050 1.20756 0.98293 0.91473 0.98586 1.23966 0.95550 1.00050 1.12994 1.84213 1.04741 0.95452 1.78711 0.88563 0.88387 0.85974 0.83854 0.87643 0.89729 0.93375 0.79969 0.91811 0.89520 0.87895 0.86141 0.81770 0.80663 0.82312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.64 9.94 127.77 1.27 1.91 16 2 N -0.53 -13.46 3.06 -663.71 -2.03 -15.49 16 3 C 0.51 16.74 7.70 87.66 0.68 17.41 16 4 O -0.50 -22.67 15.05 -2.99 -0.04 -22.72 16 5 C 0.01 0.20 3.85 85.56 0.33 0.53 16 6 N -0.47 -18.33 5.82 -932.79 -5.43 -23.76 16 7 C -0.02 -1.02 6.55 83.57 0.55 -0.48 16 8 C 0.18 8.64 1.09 -11.20 -0.01 8.63 16 9 O -0.56 -28.45 13.32 -148.98 -1.98 -30.44 16 10 C -0.53 -28.79 9.28 25.60 0.24 -28.55 16 11 H 0.07 3.79 8.06 -2.91 -0.02 3.76 16 12 C 0.03 1.75 5.47 84.65 0.46 2.21 16 13 N -0.92 -54.05 13.96 21.45 0.30 -53.75 16 14 Si 0.91 42.79 24.41 68.60 1.67 44.46 16 15 H -0.25 -11.35 7.06 99.48 0.70 -10.65 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.25 -11.90 5.47 99.48 0.54 -11.36 16 18 C 0.03 1.27 7.09 83.58 0.59 1.86 16 19 C 0.32 9.24 7.81 179.60 1.40 10.64 16 20 N -0.53 -19.02 8.63 -188.86 -1.63 -20.65 16 21 C 0.07 2.19 6.94 39.79 0.28 2.46 16 22 C -0.10 -2.56 10.10 22.73 0.23 -2.33 16 23 C -0.09 -1.44 9.99 22.14 0.22 -1.22 16 24 C -0.10 -1.20 10.05 22.26 0.22 -0.98 16 25 C -0.07 -1.03 10.06 22.40 0.23 -0.80 16 26 C -0.21 -4.72 6.52 22.91 0.15 -4.57 16 27 S 0.12 2.32 21.91 -56.49 -1.24 1.08 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.82 7.05 -2.39 -0.02 0.80 16 30 H 0.12 0.86 6.44 -2.38 -0.02 0.84 16 31 H 0.14 2.75 7.34 -2.39 -0.02 2.73 16 32 H 0.11 2.40 7.27 -2.39 -0.02 2.38 16 33 H 0.08 3.42 7.38 -2.39 -0.02 3.41 16 34 H 0.05 2.34 7.11 -2.39 -0.02 2.32 16 35 H 0.35 17.12 3.17 -74.06 -0.23 16.89 16 36 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.10 3.33 7.87 -2.39 -0.02 3.31 16 39 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 42 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -84.69 356.74 -2.88 -87.57 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.67 Total: 26.97 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.83 Total: 6.73 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -8.79 Total: -113.65 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -2.03 Total: -53.15 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.67 Total: 44.46 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.24 Total: 1.08 kcal Total: -84.69 -2.88 -87.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364388232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.960 kcal (2) G-P(sol) polarization free energy of solvation -84.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds