Wall clock time and date at job start Wed Apr 1 2020 04:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00091 * 2 1 4 4 C 1.39680 * 120.00478 * 179.73418 * 2 1 3 5 5 C 1.38925 * 120.07991 * 179.72101 * 4 2 1 6 6 C 1.38082 * 119.92627 * 179.73891 * 5 4 2 7 7 C 1.38299 * 120.07352 * 0.53527 * 6 5 4 8 8 C 1.38264 * 120.15354 * 359.74114 * 7 6 5 9 9 S 1.76196 * 119.96667 * 180.02562 * 8 7 6 10 10 O 1.42094 * 106.40525 * 18.40632 * 9 8 7 11 11 O 1.42098 * 106.40563 * 151.32883 * 9 8 7 12 12 N 1.65604 * 107.21661 * 264.86691 * 9 8 7 13 13 C 1.38819 * 120.00106 * 64.15955 * 12 9 8 14 14 C 1.39794 * 119.58650 * 186.42469 * 13 12 9 15 15 C 1.38596 * 119.49101 * 179.97438 * 14 13 12 16 16 C 1.38391 * 118.68181 * 359.97438 * 15 14 13 17 17 C 1.40556 * 119.14752 * 0.02562 * 16 15 14 18 18 C 1.41314 * 119.78058 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00090 * 149.85093 * 18 17 16 20 20 C 1.40030 * 120.00207 * 329.84305 * 18 17 16 21 21 N 1.30739 * 120.00182 * 162.14555 * 20 18 17 22 22 Si 1.86799 * 119.99757 * 342.14721 * 20 18 17 23 23 H 1.48503 * 109.47156 * 95.23717 * 22 20 18 24 24 H 1.48498 * 109.47285 * 215.24021 * 22 20 18 25 25 H 1.48506 * 109.47339 * 335.23912 * 22 20 18 26 26 N 1.31956 * 119.58476 * 6.15376 * 13 12 9 27 27 C 1.38129 * 120.07049 * 359.97438 * 8 7 6 28 28 H 1.08997 * 109.47093 * 240.26983 * 1 2 3 29 29 H 1.08992 * 109.47251 * 0.27047 * 1 2 3 30 30 H 1.09003 * 109.47169 * 120.27402 * 1 2 3 31 31 H 1.08999 * 109.47517 * 269.73129 * 3 2 1 32 32 H 1.09000 * 109.46619 * 29.72990 * 3 2 1 33 33 H 1.09001 * 109.46872 * 149.72651 * 3 2 1 34 34 H 1.08004 * 120.03516 * 0.02562 * 5 4 2 35 35 H 1.07999 * 119.96357 * 180.25028 * 6 5 4 36 36 H 1.08009 * 119.92916 * 179.71770 * 7 6 5 37 37 H 0.97003 * 119.99899 * 244.15860 * 12 9 8 38 38 H 1.07999 * 120.25620 * 359.97438 * 14 13 12 39 39 H 1.08001 * 120.65614 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.42443 * 179.97438 * 16 15 14 41 41 H 0.96995 * 120.00197 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.03612 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 0.0056 5 6 3.5527 -1.2115 -0.0002 6 6 4.2400 -2.4090 0.0108 7 6 3.5470 -3.6058 0.0165 8 6 2.1643 -3.6077 0.0165 9 16 1.2864 -5.1354 0.0244 10 8 2.2078 -6.1255 0.4599 11 8 0.0495 -4.8840 0.6772 12 7 0.9194 -5.4979 -1.5492 13 6 1.9372 -5.7473 -2.4596 14 6 1.6270 -5.9192 -3.8118 15 6 2.6449 -6.1675 -4.7191 16 6 3.9465 -6.2376 -4.2543 17 6 4.1944 -6.0561 -2.8827 18 6 5.5185 -6.1243 -2.3937 19 1 5.8048 -5.5459 -1.5278 20 6 6.4592 -6.9421 -3.0317 21 7 7.7362 -6.7563 -2.8217 22 14 5.8896 -8.2985 -4.1829 23 1 5.9071 -7.8003 -5.5817 24 1 6.7999 -9.4655 -4.0615 25 1 4.5089 -8.7080 -3.8205 26 7 3.1860 -5.8139 -2.0385 27 6 1.4705 -2.4133 0.0114 28 1 -0.3633 -0.5096 0.8924 29 1 -0.3633 1.0276 -0.0049 30 1 -0.3634 -0.5181 -0.8875 31 1 2.3834 1.5810 -1.0276 32 1 1.6062 2.0295 0.5096 33 1 3.1478 1.1396 0.5181 34 1 4.0945 -0.2772 -0.0087 35 1 5.3200 -2.4111 0.0103 36 1 4.0870 -4.5412 0.0205 37 1 -0.0069 -5.5361 -1.8348 38 1 0.6021 -5.8589 -4.1469 39 1 2.4266 -6.3028 -5.7681 40 1 4.7613 -6.4301 -4.9366 41 1 8.3879 -7.3225 -3.2639 42 1 0.3905 -2.4155 0.0119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365463818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:07 Heat of formation + Delta-G solvation = 3.966618 kcal Electronic energy + Delta-G solvation = -28541.677554 eV Core-core repulsion = 24614.089461 eV Total energy + Delta-G solvation = -3927.588093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.45533 -38.92014 -36.74712 -36.14435 -35.35591 -35.00892 -33.34652 -31.27548 -31.16740 -29.91417 -29.38646 -28.29544 -25.68373 -24.80891 -22.68395 -22.22777 -21.56728 -21.12400 -18.92651 -18.39431 -17.87108 -17.02603 -16.33015 -15.84170 -15.76147 -15.53430 -15.30708 -15.15844 -14.73018 -14.63543 -14.32550 -13.69289 -13.62544 -13.30165 -12.99334 -12.81637 -12.65374 -12.55969 -12.50365 -12.27200 -11.97799 -11.81681 -11.70751 -11.58408 -11.43214 -11.35800 -11.11367 -11.07330 -10.49562 -10.43053 -10.18382 -9.99348 -9.89223 -9.33987 -8.99928 -8.62721 -8.15958 -7.41777 -7.25459 -7.06760 -4.71763 0.75610 1.20715 1.79578 2.39590 2.52190 3.04515 3.05305 3.16960 3.26622 3.29968 3.86675 3.90455 4.16675 4.40815 4.79343 4.85887 4.97697 5.04616 5.12698 5.14100 5.24081 5.43949 5.46610 5.50746 5.54997 5.63614 5.71964 5.78226 5.87559 5.98312 6.13524 6.26352 6.36461 6.41008 6.60952 6.66482 6.73731 6.96261 7.01340 7.16148 7.18362 7.33964 7.41684 7.50028 7.74133 8.23191 8.37528 8.60077 9.40261 9.94154 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.004086 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.014828 B = 6850.927165 C = 7655.443985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.644 5.644 3 C 0.096 3.904 4 C 0.179 3.821 5 C -0.141 4.141 6 C -0.098 4.098 7 C -0.033 4.033 8 C -0.619 4.619 9 S 2.693 3.307 10 O -0.921 6.921 11 O -0.976 6.976 12 N -1.035 6.035 13 C 0.398 3.602 14 C -0.321 4.321 15 C -0.022 4.022 16 C -0.301 4.301 17 C 0.290 3.710 18 C -0.412 4.412 19 H 0.102 0.898 20 C 0.090 3.910 21 N -0.792 5.792 22 Si 0.913 3.087 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.245 1.245 26 N -0.571 5.571 27 C -0.101 4.101 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.424 0.576 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.289 0.711 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.704 11.319 1.692 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.358 5.358 3 C -0.047 4.047 4 C 0.079 3.921 5 C -0.163 4.163 6 C -0.117 4.117 7 C -0.054 4.054 8 C -0.708 4.708 9 S 2.785 3.215 10 O -0.911 6.911 11 O -0.966 6.966 12 N -0.784 5.784 13 C 0.160 3.840 14 C -0.348 4.348 15 C -0.047 4.047 16 C -0.324 4.324 17 C 0.165 3.835 18 C -0.443 4.443 19 H 0.120 0.880 20 C -0.132 4.132 21 N -0.415 5.415 22 Si 0.739 3.261 23 H -0.195 1.195 24 H -0.215 1.215 25 H -0.169 1.169 26 N -0.293 5.293 27 C -0.125 4.125 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.259 0.741 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.100 0.900 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.372 11.081 3.397 14.905 hybrid contribution -0.461 0.046 -2.037 2.089 sum -9.832 11.127 1.360 14.911 Atomic orbital electron populations 1.21597 0.79612 1.02192 1.01416 1.46180 1.04797 1.02871 1.81999 1.21613 0.97228 0.84883 1.00988 1.17712 0.91321 0.85540 0.97563 1.20957 0.92060 0.98862 1.04427 1.21130 1.00263 0.91714 0.98637 1.21069 0.91776 1.00057 0.92502 1.30466 1.06629 1.18170 1.15521 1.01962 0.73162 0.74416 0.72004 1.93630 1.63721 1.55522 1.78221 1.93555 1.44402 1.86719 1.71957 1.53225 1.14050 1.81910 1.29229 1.17866 0.87171 0.92240 0.86687 1.20674 0.98910 1.23218 0.92030 1.20785 0.92590 0.93656 0.97663 1.21793 0.96390 1.17207 0.97009 1.18126 0.91085 0.87011 0.87297 1.19194 0.89796 1.22500 1.12816 0.88002 1.26083 0.94096 0.97982 0.95079 1.69600 1.02008 1.34284 1.35655 0.86294 0.80629 0.79408 0.79734 1.19473 1.21527 1.16856 1.67638 0.96998 1.26920 1.37762 1.20235 0.99134 0.90100 1.02993 0.92717 0.91004 0.92821 0.93595 0.91754 0.91466 0.85794 0.85058 0.82655 0.74122 0.87604 0.87430 0.87066 0.89997 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 9.40 59.84 0.56 1.46 16 2 N -0.64 -7.55 3.41 -187.55 -0.64 -8.19 16 3 C 0.10 0.83 10.15 59.85 0.61 1.44 16 4 C 0.18 2.64 6.55 -83.79 -0.55 2.09 16 5 C -0.14 -2.04 9.20 -39.38 -0.36 -2.40 16 6 C -0.10 -1.60 10.04 -39.62 -0.40 -2.00 16 7 C -0.03 -0.62 8.64 -39.55 -0.34 -0.96 16 8 C -0.62 -11.21 5.75 -39.61 -0.23 -11.44 16 9 S 2.69 50.37 5.38 -107.50 -0.58 49.79 16 10 O -0.92 -20.61 15.92 -57.18 -0.91 -21.52 16 11 O -0.98 -18.15 17.42 -57.18 -1.00 -19.14 16 12 N -1.04 -18.17 5.83 31.15 0.18 -17.99 16 13 C 0.40 8.41 7.33 -155.33 -1.14 7.27 16 14 C -0.32 -6.30 9.96 -38.87 -0.39 -6.69 16 15 C -0.02 -0.45 10.15 -39.39 -0.40 -0.85 16 16 C -0.30 -6.95 7.18 -38.65 -0.28 -7.23 16 17 C 0.29 7.27 5.94 -85.00 -0.51 6.77 16 18 C -0.41 -10.81 9.79 -37.74 -0.37 -11.18 16 19 H 0.10 2.79 8.06 -52.48 -0.42 2.37 16 20 C 0.09 2.25 5.40 -17.35 -0.09 2.16 16 21 N -0.79 -19.97 13.92 55.55 0.77 -19.19 16 22 Si 0.91 20.06 24.50 -169.99 -4.17 15.90 16 23 H -0.27 -5.60 6.70 56.52 0.38 -5.22 16 24 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.25 -5.66 6.86 56.52 0.39 -5.27 16 26 N -0.57 -13.73 6.94 -10.33 -0.07 -13.80 16 27 C -0.10 -1.62 8.78 -39.38 -0.35 -1.96 16 28 H 0.05 0.51 7.95 -51.93 -0.41 0.10 16 29 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16 30 H 0.05 0.51 7.95 -51.93 -0.41 0.09 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 33 H 0.07 0.56 6.22 -51.93 -0.32 0.23 16 34 H 0.12 1.44 6.16 -52.48 -0.32 1.12 16 35 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.16 3.26 6.99 -52.48 -0.37 2.90 16 37 H 0.42 5.74 8.82 -34.47 -0.30 5.44 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.11 2.51 4.71 -52.49 -0.25 2.26 16 41 H 0.29 6.57 8.29 -40.82 -0.34 6.23 16 42 H 0.13 1.85 6.41 -52.48 -0.34 1.51 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -31.92 357.85 -10.07 -41.99 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.83 Total: 10.29 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -4.23 Total: -23.52 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.24 Total: -59.17 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.91 Total: -40.67 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.17 Total: 15.90 kcal Atomic # 16 Polarization: 50.37 SS G_CDS: -0.58 Total: 49.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.92 -10.07 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365463818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.958 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds