Wall clock time and date at job start Wed Apr 1 2020 04:12:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.46503 * 120.00091 * 2 1
4 4 C 1.39680 * 120.00478 * 179.73418 * 2 1 3
5 5 C 1.38925 * 120.07991 * 179.72101 * 4 2 1
6 6 C 1.38082 * 119.92627 * 179.73891 * 5 4 2
7 7 C 1.38299 * 120.07352 * 0.53527 * 6 5 4
8 8 C 1.38264 * 120.15354 * 359.74114 * 7 6 5
9 9 S 1.76196 * 119.96667 * 180.02562 * 8 7 6
10 10 O 1.42094 * 106.40525 * 18.40632 * 9 8 7
11 11 O 1.42098 * 106.40563 * 151.32883 * 9 8 7
12 12 N 1.65604 * 107.21661 * 264.86691 * 9 8 7
13 13 C 1.38819 * 120.00106 * 64.15955 * 12 9 8
14 14 C 1.39794 * 119.58650 * 186.42469 * 13 12 9
15 15 C 1.38596 * 119.49101 * 179.97438 * 14 13 12
16 16 C 1.38391 * 118.68181 * 359.97438 * 15 14 13
17 17 C 1.40556 * 119.14752 * 0.02562 * 16 15 14
18 18 C 1.41314 * 119.78058 * 180.02562 * 17 16 15
19 19 H 1.08003 * 120.00090 * 149.85093 * 18 17 16
20 20 C 1.40030 * 120.00207 * 329.84305 * 18 17 16
21 21 N 1.30739 * 120.00182 * 162.14555 * 20 18 17
22 22 Si 1.86799 * 119.99757 * 342.14721 * 20 18 17
23 23 H 1.48503 * 109.47156 * 95.23717 * 22 20 18
24 24 H 1.48498 * 109.47285 * 215.24021 * 22 20 18
25 25 H 1.48506 * 109.47339 * 335.23912 * 22 20 18
26 26 N 1.31956 * 119.58476 * 6.15376 * 13 12 9
27 27 C 1.38129 * 120.07049 * 359.97438 * 8 7 6
28 28 H 1.08997 * 109.47093 * 240.26983 * 1 2 3
29 29 H 1.08992 * 109.47251 * 0.27047 * 1 2 3
30 30 H 1.09003 * 109.47169 * 120.27402 * 1 2 3
31 31 H 1.08999 * 109.47517 * 269.73129 * 3 2 1
32 32 H 1.09000 * 109.46619 * 29.72990 * 3 2 1
33 33 H 1.09001 * 109.46872 * 149.72651 * 3 2 1
34 34 H 1.08004 * 120.03516 * 0.02562 * 5 4 2
35 35 H 1.07999 * 119.96357 * 180.25028 * 6 5 4
36 36 H 1.08009 * 119.92916 * 179.71770 * 7 6 5
37 37 H 0.97003 * 119.99899 * 244.15860 * 12 9 8
38 38 H 1.07999 * 120.25620 * 359.97438 * 14 13 12
39 39 H 1.08001 * 120.65614 * 180.02562 * 15 14 13
40 40 H 1.08001 * 120.42443 * 179.97438 * 16 15 14
41 41 H 0.96995 * 120.00197 * 180.02562 * 21 20 18
42 42 H 1.08003 * 120.03612 * 180.02562 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1634 -1.2096 0.0056
5 6 3.5527 -1.2115 -0.0002
6 6 4.2400 -2.4090 0.0108
7 6 3.5470 -3.6058 0.0165
8 6 2.1643 -3.6077 0.0165
9 16 1.2864 -5.1354 0.0244
10 8 2.2078 -6.1255 0.4599
11 8 0.0495 -4.8840 0.6772
12 7 0.9194 -5.4979 -1.5492
13 6 1.9372 -5.7473 -2.4596
14 6 1.6270 -5.9192 -3.8118
15 6 2.6449 -6.1675 -4.7191
16 6 3.9465 -6.2376 -4.2543
17 6 4.1944 -6.0561 -2.8827
18 6 5.5185 -6.1243 -2.3937
19 1 5.8048 -5.5459 -1.5278
20 6 6.4592 -6.9421 -3.0317
21 7 7.7362 -6.7563 -2.8217
22 14 5.8896 -8.2985 -4.1829
23 1 5.9071 -7.8003 -5.5817
24 1 6.7999 -9.4655 -4.0615
25 1 4.5089 -8.7080 -3.8205
26 7 3.1860 -5.8139 -2.0385
27 6 1.4705 -2.4133 0.0114
28 1 -0.3633 -0.5096 0.8924
29 1 -0.3633 1.0276 -0.0049
30 1 -0.3634 -0.5181 -0.8875
31 1 2.3834 1.5810 -1.0276
32 1 1.6062 2.0295 0.5096
33 1 3.1478 1.1396 0.5181
34 1 4.0945 -0.2772 -0.0087
35 1 5.3200 -2.4111 0.0103
36 1 4.0870 -4.5412 0.0205
37 1 -0.0069 -5.5361 -1.8348
38 1 0.6021 -5.8589 -4.1469
39 1 2.4266 -6.3028 -5.7681
40 1 4.7613 -6.4301 -4.9366
41 1 8.3879 -7.3225 -3.2639
42 1 0.3905 -2.4155 0.0119
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001365463818.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:12:07
Heat of formation + Delta-G solvation = 3.966618 kcal
Electronic energy + Delta-G solvation = -28541.677554 eV
Core-core repulsion = 24614.089461 eV
Total energy + Delta-G solvation = -3927.588093 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-39.45533 -38.92014 -36.74712 -36.14435 -35.35591 -35.00892 -33.34652 -31.27548
-31.16740 -29.91417 -29.38646 -28.29544 -25.68373 -24.80891 -22.68395 -22.22777
-21.56728 -21.12400 -18.92651 -18.39431 -17.87108 -17.02603 -16.33015 -15.84170
-15.76147 -15.53430 -15.30708 -15.15844 -14.73018 -14.63543 -14.32550 -13.69289
-13.62544 -13.30165 -12.99334 -12.81637 -12.65374 -12.55969 -12.50365 -12.27200
-11.97799 -11.81681 -11.70751 -11.58408 -11.43214 -11.35800 -11.11367 -11.07330
-10.49562 -10.43053 -10.18382 -9.99348 -9.89223 -9.33987 -8.99928 -8.62721
-8.15958 -7.41777 -7.25459 -7.06760 -4.71763 0.75610 1.20715 1.79578
2.39590 2.52190 3.04515 3.05305 3.16960 3.26622 3.29968 3.86675
3.90455 4.16675 4.40815 4.79343 4.85887 4.97697 5.04616 5.12698
5.14100 5.24081 5.43949 5.46610 5.50746 5.54997 5.63614 5.71964
5.78226 5.87559 5.98312 6.13524 6.26352 6.36461 6.41008 6.60952
6.66482 6.73731 6.96261 7.01340 7.16148 7.18362 7.33964 7.41684
7.50028 7.74133 8.23191 8.37528 8.60077 9.40261 9.94154
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.012829 B = 0.004086 C = 0.003657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2182.014828 B = 6850.927165 C = 7655.443985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.644 5.644
3 C 0.096 3.904
4 C 0.179 3.821
5 C -0.141 4.141
6 C -0.098 4.098
7 C -0.033 4.033
8 C -0.619 4.619
9 S 2.693 3.307
10 O -0.921 6.921
11 O -0.976 6.976
12 N -1.035 6.035
13 C 0.398 3.602
14 C -0.321 4.321
15 C -0.022 4.022
16 C -0.301 4.301
17 C 0.290 3.710
18 C -0.412 4.412
19 H 0.102 0.898
20 C 0.090 3.910
21 N -0.792 5.792
22 Si 0.913 3.087
23 H -0.269 1.269
24 H -0.288 1.288
25 H -0.245 1.245
26 N -0.571 5.571
27 C -0.101 4.101
28 H 0.054 0.946
29 H 0.071 0.929
30 H 0.053 0.947
31 H 0.046 0.954
32 H 0.064 0.936
33 H 0.067 0.933
34 H 0.124 0.876
35 H 0.132 0.868
36 H 0.156 0.844
37 H 0.424 0.576
38 H 0.106 0.894
39 H 0.108 0.892
40 H 0.112 0.888
41 H 0.289 0.711
42 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.704 11.319 1.692 15.005
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.048 4.048
2 N -0.358 5.358
3 C -0.047 4.047
4 C 0.079 3.921
5 C -0.163 4.163
6 C -0.117 4.117
7 C -0.054 4.054
8 C -0.708 4.708
9 S 2.785 3.215
10 O -0.911 6.911
11 O -0.966 6.966
12 N -0.784 5.784
13 C 0.160 3.840
14 C -0.348 4.348
15 C -0.047 4.047
16 C -0.324 4.324
17 C 0.165 3.835
18 C -0.443 4.443
19 H 0.120 0.880
20 C -0.132 4.132
21 N -0.415 5.415
22 Si 0.739 3.261
23 H -0.195 1.195
24 H -0.215 1.215
25 H -0.169 1.169
26 N -0.293 5.293
27 C -0.125 4.125
28 H 0.073 0.927
29 H 0.090 0.910
30 H 0.072 0.928
31 H 0.064 0.936
32 H 0.082 0.918
33 H 0.085 0.915
34 H 0.142 0.858
35 H 0.149 0.851
36 H 0.173 0.827
37 H 0.259 0.741
38 H 0.124 0.876
39 H 0.126 0.874
40 H 0.129 0.871
41 H 0.100 0.900
42 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -9.372 11.081 3.397 14.905
hybrid contribution -0.461 0.046 -2.037 2.089
sum -9.832 11.127 1.360 14.911
Atomic orbital electron populations
1.21597 0.79612 1.02192 1.01416 1.46180 1.04797 1.02871 1.81999
1.21613 0.97228 0.84883 1.00988 1.17712 0.91321 0.85540 0.97563
1.20957 0.92060 0.98862 1.04427 1.21130 1.00263 0.91714 0.98637
1.21069 0.91776 1.00057 0.92502 1.30466 1.06629 1.18170 1.15521
1.01962 0.73162 0.74416 0.72004 1.93630 1.63721 1.55522 1.78221
1.93555 1.44402 1.86719 1.71957 1.53225 1.14050 1.81910 1.29229
1.17866 0.87171 0.92240 0.86687 1.20674 0.98910 1.23218 0.92030
1.20785 0.92590 0.93656 0.97663 1.21793 0.96390 1.17207 0.97009
1.18126 0.91085 0.87011 0.87297 1.19194 0.89796 1.22500 1.12816
0.88002 1.26083 0.94096 0.97982 0.95079 1.69600 1.02008 1.34284
1.35655 0.86294 0.80629 0.79408 0.79734 1.19473 1.21527 1.16856
1.67638 0.96998 1.26920 1.37762 1.20235 0.99134 0.90100 1.02993
0.92717 0.91004 0.92821 0.93595 0.91754 0.91466 0.85794 0.85058
0.82655 0.74122 0.87604 0.87430 0.87066 0.89997 0.85279
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.89 9.40 59.84 0.56 1.46 16
2 N -0.64 -7.55 3.41 -187.55 -0.64 -8.19 16
3 C 0.10 0.83 10.15 59.85 0.61 1.44 16
4 C 0.18 2.64 6.55 -83.79 -0.55 2.09 16
5 C -0.14 -2.04 9.20 -39.38 -0.36 -2.40 16
6 C -0.10 -1.60 10.04 -39.62 -0.40 -2.00 16
7 C -0.03 -0.62 8.64 -39.55 -0.34 -0.96 16
8 C -0.62 -11.21 5.75 -39.61 -0.23 -11.44 16
9 S 2.69 50.37 5.38 -107.50 -0.58 49.79 16
10 O -0.92 -20.61 15.92 -57.18 -0.91 -21.52 16
11 O -0.98 -18.15 17.42 -57.18 -1.00 -19.14 16
12 N -1.04 -18.17 5.83 31.15 0.18 -17.99 16
13 C 0.40 8.41 7.33 -155.33 -1.14 7.27 16
14 C -0.32 -6.30 9.96 -38.87 -0.39 -6.69 16
15 C -0.02 -0.45 10.15 -39.39 -0.40 -0.85 16
16 C -0.30 -6.95 7.18 -38.65 -0.28 -7.23 16
17 C 0.29 7.27 5.94 -85.00 -0.51 6.77 16
18 C -0.41 -10.81 9.79 -37.74 -0.37 -11.18 16
19 H 0.10 2.79 8.06 -52.48 -0.42 2.37 16
20 C 0.09 2.25 5.40 -17.35 -0.09 2.16 16
21 N -0.79 -19.97 13.92 55.55 0.77 -19.19 16
22 Si 0.91 20.06 24.50 -169.99 -4.17 15.90 16
23 H -0.27 -5.60 6.70 56.52 0.38 -5.22 16
24 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16
25 H -0.25 -5.66 6.86 56.52 0.39 -5.27 16
26 N -0.57 -13.73 6.94 -10.33 -0.07 -13.80 16
27 C -0.10 -1.62 8.78 -39.38 -0.35 -1.96 16
28 H 0.05 0.51 7.95 -51.93 -0.41 0.10 16
29 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16
30 H 0.05 0.51 7.95 -51.93 -0.41 0.09 16
31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16
33 H 0.07 0.56 6.22 -51.93 -0.32 0.23 16
34 H 0.12 1.44 6.16 -52.48 -0.32 1.12 16
35 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16
36 H 0.16 3.26 6.99 -52.48 -0.37 2.90 16
37 H 0.42 5.74 8.82 -34.47 -0.30 5.44 16
38 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16
39 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16
40 H 0.11 2.51 4.71 -52.49 -0.25 2.26 16
41 H 0.29 6.57 8.29 -40.82 -0.34 6.23 16
42 H 0.13 1.85 6.41 -52.48 -0.34 1.51 16
LS Contribution 357.85 15.07 5.39 5.39
Total: -1.00 -31.92 357.85 -10.07 -41.99
By element:
Atomic # 1 Polarization: 15.12 SS G_CDS: -4.83 Total: 10.29 kcal
Atomic # 6 Polarization: -19.30 SS G_CDS: -4.23 Total: -23.52 kcal
Atomic # 7 Polarization: -59.42 SS G_CDS: 0.24 Total: -59.17 kcal
Atomic # 8 Polarization: -38.76 SS G_CDS: -1.91 Total: -40.67 kcal
Atomic # 14 Polarization: 20.06 SS G_CDS: -4.17 Total: 15.90 kcal
Atomic # 16 Polarization: 50.37 SS G_CDS: -0.58 Total: 49.79 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -31.92 -10.07 -41.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365463818.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.958 kcal
(2) G-P(sol) polarization free energy of solvation -31.925 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.033 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.967 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds