Wall clock time and date at job start Wed Apr 1 2020 04:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40080 * 126.03832 * 2 1 4 4 C 1.30841 * 108.20385 * 179.97438 * 3 2 1 5 5 C 1.39865 * 108.20467 * 359.97438 * 4 3 2 6 6 C 1.34952 * 126.03693 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.12247 * 359.96153 * 6 2 1 8 8 H 1.09003 * 109.47297 * 25.02833 * 7 6 2 9 9 O 1.42907 * 109.46834 * 145.02450 * 7 6 2 10 10 C 1.52995 * 109.47207 * 265.02117 * 7 6 2 11 11 N 1.46500 * 109.47109 * 180.02562 * 10 7 6 12 12 C 1.34782 * 119.99703 * 180.02562 * 11 10 7 13 13 O 1.21552 * 120.00148 * 0.02562 * 12 11 10 14 14 C 1.47861 * 119.99630 * 179.97438 * 12 11 10 15 15 C 1.39672 * 120.10131 * 359.72201 * 14 12 11 16 16 C 1.38050 * 120.03656 * 179.79222 * 15 14 12 17 17 C 1.38175 * 120.24300 * 0.46237 * 16 15 14 18 18 C 1.39183 * 120.20275 * 359.79356 * 17 16 15 19 19 S 1.76202 * 120.02089 * 179.97438 * 18 17 16 20 20 C 1.76193 * 100.00050 * 265.52772 * 19 18 17 21 21 H 1.07999 * 119.99928 * 5.12090 * 20 19 18 22 22 C 1.38732 * 119.99746 * 185.11798 * 20 19 18 23 23 N 1.31616 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99633 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47116 * 60.00247 * 24 22 20 26 26 H 1.48504 * 109.46956 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47121 * 299.99888 * 24 22 20 28 28 C 1.38877 * 119.96008 * 359.97185 * 18 17 16 29 29 H 1.08997 * 109.46426 * 90.02351 * 1 2 3 30 30 H 1.08997 * 109.47265 * 210.02843 * 1 2 3 31 31 H 1.08996 * 109.46845 * 330.02741 * 1 2 3 32 32 H 1.08007 * 125.89734 * 179.97438 * 4 3 2 33 33 H 1.07996 * 126.04116 * 179.97438 * 5 4 3 34 34 H 0.96700 * 113.99876 * 59.99932 * 9 7 6 35 35 H 1.08994 * 109.47695 * 300.00798 * 10 7 6 36 36 H 1.09007 * 109.46634 * 60.00650 * 10 7 6 37 37 H 0.96996 * 120.00179 * 359.97438 * 11 10 7 38 38 H 1.08001 * 119.98342 * 359.97438 * 15 14 12 39 39 H 1.08001 * 119.87422 * 180.21389 * 16 15 14 40 40 H 1.07998 * 119.89965 * 179.76986 * 17 16 15 41 41 H 0.97004 * 120.00058 * 179.97438 * 23 22 20 42 42 H 1.07997 * 120.12171 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5438 -0.6666 0.0015 6 6 2.2590 -1.0913 0.0005 7 6 1.7973 -2.5258 0.0019 8 1 0.7993 -2.5868 -0.4322 9 8 2.7019 -3.3181 -0.7702 10 6 1.7610 -3.0484 1.4394 11 7 1.3127 -4.4432 1.4408 12 6 1.2029 -5.1146 2.6043 13 8 1.4754 -4.5627 3.6525 14 6 0.7500 -6.5221 2.6057 15 6 0.4298 -7.1561 1.4030 16 6 0.0111 -8.4716 1.4055 17 6 -0.1023 -9.1636 2.5960 18 6 0.2091 -8.5401 3.8008 19 16 0.0621 -9.4269 5.3163 20 6 -1.5622 -8.9428 5.7977 21 1 -2.1642 -8.3386 5.1353 22 6 -2.0678 -9.3380 7.0277 23 7 -1.3339 -10.0741 7.8351 24 14 -3.7896 -8.8242 7.5384 25 1 -4.7742 -9.3514 6.5597 26 1 -4.0898 -9.3704 8.8863 27 1 -3.8734 -7.3421 7.5755 28 6 0.6357 -7.2185 3.8077 29 1 -0.3632 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 4.4055 1.3709 0.0003 33 1 4.4211 -1.2964 0.0018 34 1 3.6110 -3.3106 -0.4408 35 1 2.7588 -2.9874 1.8736 36 1 1.0709 -2.4441 2.0283 37 1 1.0942 -4.8832 0.6044 38 1 0.5126 -6.6179 0.4704 39 1 -0.2325 -8.9604 0.4737 40 1 -0.4339 -10.1914 2.5918 41 1 -1.6873 -10.3501 8.6953 42 1 0.8784 -6.7322 4.7409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413645538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:00 Heat of formation + Delta-G solvation = 19.007860 kcal Electronic energy + Delta-G solvation = -26311.386335 eV Core-core repulsion = 22384.450479 eV Total energy + Delta-G solvation = -3926.935855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80534 -40.06783 -38.27573 -37.56042 -34.62557 -33.77476 -32.52486 -31.71941 -30.86293 -30.54552 -28.38646 -27.18551 -25.58637 -24.51146 -23.04237 -22.14380 -21.58114 -20.85671 -20.14554 -18.51667 -18.18182 -17.46541 -16.57508 -16.25099 -16.07934 -15.78589 -15.43251 -15.02045 -14.95848 -14.86461 -14.68175 -14.28745 -14.05556 -13.77377 -13.65780 -13.41272 -13.17712 -13.03068 -12.91111 -12.81757 -12.23979 -12.04717 -11.67536 -11.31238 -11.18717 -11.15982 -11.09008 -10.87393 -10.73183 -10.04210 -9.88470 -9.73163 -9.33941 -9.17134 -9.04247 -9.00501 -8.62690 -8.05805 -6.73163 -6.30036 -4.04237 1.11772 1.31230 1.63545 2.01300 2.37392 2.90413 2.98308 3.18981 3.21673 3.25144 3.43866 3.75139 3.92543 4.05830 4.09416 4.21093 4.23615 4.33569 4.67880 4.72667 4.79430 4.96809 5.05266 5.06661 5.06966 5.20527 5.22161 5.25970 5.34757 5.45721 5.65205 5.70531 5.84055 5.94823 6.15214 6.19343 6.22355 6.46964 6.54406 6.60812 6.89805 6.91370 7.15379 7.24554 7.37909 7.55493 8.18598 8.30615 9.15544 10.76614 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.002078 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.149564 B =13473.634963 C =14278.820593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.364 5.364 3 N -0.290 5.290 4 C 0.048 3.952 5 C -0.258 4.258 6 C 0.051 3.949 7 C 0.165 3.835 8 H 0.116 0.884 9 O -0.540 6.540 10 C 0.097 3.903 11 N -0.728 5.728 12 C 0.565 3.435 13 O -0.533 6.533 14 C -0.155 4.155 15 C -0.089 4.089 16 C -0.141 4.141 17 C -0.054 4.054 18 C -0.107 4.107 19 S -0.034 6.034 20 C -0.521 4.521 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.870 5.870 24 Si 0.921 3.079 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.273 1.273 28 C -0.018 4.018 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.186 0.814 33 H 0.149 0.851 34 H 0.385 0.615 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.270 0.730 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.445 15.682 -20.015 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.148 5.148 3 N -0.112 5.112 4 C -0.137 4.137 5 C -0.288 4.288 6 C -0.078 4.078 7 C 0.103 3.897 8 H 0.134 0.866 9 O -0.345 6.345 10 C -0.029 4.029 11 N -0.383 5.383 12 C 0.354 3.646 13 O -0.410 6.410 14 C -0.160 4.160 15 C -0.108 4.108 16 C -0.161 4.161 17 C -0.075 4.075 18 C -0.218 4.218 19 S 0.200 5.800 20 C -0.668 4.668 21 H 0.093 0.907 22 C -0.136 4.136 23 N -0.505 5.505 24 Si 0.747 3.253 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.198 1.198 28 C -0.040 4.040 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.203 0.797 33 H 0.167 0.833 34 H 0.234 0.766 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.241 0.759 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.916 16.151 -18.828 25.502 hybrid contribution -0.992 0.526 -0.409 1.194 sum 4.924 16.676 -19.237 25.931 Atomic orbital electron populations 1.21968 0.74059 1.05022 1.03743 1.48481 1.06669 1.03103 1.56502 1.77414 1.01943 1.07669 1.24171 1.23865 0.95300 0.94926 0.99632 1.21199 0.96025 0.95362 1.16208 1.21570 0.92097 0.90789 1.03320 1.20469 0.94708 0.83047 0.91465 0.86615 1.86636 1.23163 1.69172 1.55528 1.21903 1.02102 0.83283 0.95568 1.45730 1.70232 1.12566 1.09759 1.18432 0.76803 0.86290 0.83089 1.90790 1.49380 1.69484 1.31325 1.19805 1.07868 0.93317 0.95029 1.21150 0.98264 0.95239 0.96117 1.21070 1.02230 0.94550 0.98228 1.21977 0.94019 1.00043 0.91465 1.22864 1.00605 0.96869 1.01452 1.83616 1.23276 1.58357 1.14707 1.22788 0.98650 1.39535 1.05832 0.90685 1.25001 0.98822 0.94675 0.95070 1.69972 1.36861 1.33906 1.09756 0.86180 0.82245 0.79114 0.77792 1.19819 1.20715 1.19819 1.21955 0.91871 0.92983 0.97171 0.90313 0.89306 0.88740 0.79683 0.83296 0.76613 0.90233 0.90433 0.75918 0.86412 0.85800 0.85038 0.91979 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.06 59.85 0.66 1.16 16 2 N -0.36 -3.17 4.01 -63.88 -0.26 -3.42 16 3 N -0.29 -3.00 12.58 30.63 0.39 -2.62 16 4 C 0.05 0.40 12.03 -17.37 -0.21 0.19 16 5 C -0.26 -1.97 10.17 -40.02 -0.41 -2.37 16 6 C 0.05 0.40 6.00 -82.26 -0.49 -0.09 16 7 C 0.16 1.08 3.14 -27.88 -0.09 0.99 16 8 H 0.12 0.63 7.49 -51.93 -0.39 0.25 16 9 O -0.54 -3.49 12.96 -35.23 -0.46 -3.94 16 10 C 0.10 0.84 5.32 -4.04 -0.02 0.82 16 11 N -0.73 -7.49 5.40 -61.25 -0.33 -7.82 16 12 C 0.57 8.61 7.77 -12.32 -0.10 8.52 16 13 O -0.53 -10.18 16.34 5.32 0.09 -10.09 16 14 C -0.16 -2.51 5.87 -105.00 -0.62 -3.13 16 15 C -0.09 -1.16 9.54 -39.12 -0.37 -1.53 16 16 C -0.14 -1.95 10.02 -39.67 -0.40 -2.34 16 17 C -0.05 -0.94 9.79 -39.25 -0.38 -1.33 16 18 C -0.11 -2.25 5.45 -38.99 -0.21 -2.47 16 19 S -0.03 -0.87 21.41 -107.50 -2.30 -3.17 16 20 C -0.52 -14.57 9.46 30.91 0.29 -14.28 16 21 H 0.07 2.07 7.79 -52.49 -0.41 1.66 16 22 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 23 N -0.87 -25.31 13.22 55.49 0.73 -24.57 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.34 7.55 -51.93 -0.39 -0.05 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.19 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.15 0.76 7.58 -52.49 -0.40 0.37 16 34 H 0.38 1.50 8.20 45.56 0.37 1.87 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 3.27 6.38 -40.82 -0.26 3.01 16 38 H 0.12 1.07 6.40 -52.49 -0.34 0.73 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.14 3.01 7.65 -52.49 -0.40 2.61 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -36.10 381.33 -8.52 -44.63 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.31 Total: 3.63 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.80 Total: -14.64 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.53 Total: -38.44 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.37 Total: -14.04 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.30 Total: -3.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.10 -8.52 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.635 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds