Wall clock time and date at job start Wed Apr 1 2020 04:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40080 * 126.03832 * 2 1 4 4 C 1.30841 * 108.20385 * 179.97438 * 3 2 1 5 5 C 1.39865 * 108.20467 * 359.97438 * 4 3 2 6 6 C 1.34952 * 126.03693 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.12247 * 359.96153 * 6 2 1 8 8 H 1.09003 * 109.47297 * 25.02833 * 7 6 2 9 9 O 1.42907 * 109.46834 * 145.02450 * 7 6 2 10 10 C 1.52995 * 109.47207 * 265.02117 * 7 6 2 11 11 N 1.46500 * 109.47109 * 180.02562 * 10 7 6 12 12 C 1.34782 * 119.99703 * 180.02562 * 11 10 7 13 13 O 1.21552 * 120.00148 * 0.02562 * 12 11 10 14 14 C 1.47861 * 119.99630 * 179.97438 * 12 11 10 15 15 C 1.39672 * 120.10131 * 359.72201 * 14 12 11 16 16 C 1.38050 * 120.03656 * 179.79222 * 15 14 12 17 17 C 1.38175 * 120.24300 * 0.46237 * 16 15 14 18 18 C 1.39183 * 120.20275 * 359.79356 * 17 16 15 19 19 S 1.76202 * 120.02089 * 179.97438 * 18 17 16 20 20 C 1.76193 * 100.00050 * 265.52772 * 19 18 17 21 21 H 1.07999 * 119.99928 * 5.12090 * 20 19 18 22 22 C 1.38732 * 119.99746 * 185.11798 * 20 19 18 23 23 N 1.31616 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99633 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47116 * 60.00247 * 24 22 20 26 26 H 1.48504 * 109.46956 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47121 * 299.99888 * 24 22 20 28 28 C 1.38877 * 119.96008 * 359.97185 * 18 17 16 29 29 H 1.08997 * 109.46426 * 90.02351 * 1 2 3 30 30 H 1.08997 * 109.47265 * 210.02843 * 1 2 3 31 31 H 1.08996 * 109.46845 * 330.02741 * 1 2 3 32 32 H 1.08007 * 125.89734 * 179.97438 * 4 3 2 33 33 H 1.07996 * 126.04116 * 179.97438 * 5 4 3 34 34 H 0.96700 * 113.99876 * 59.99932 * 9 7 6 35 35 H 1.08994 * 109.47695 * 300.00798 * 10 7 6 36 36 H 1.09007 * 109.46634 * 60.00650 * 10 7 6 37 37 H 0.96996 * 120.00179 * 359.97438 * 11 10 7 38 38 H 1.08001 * 119.98342 * 359.97438 * 15 14 12 39 39 H 1.08001 * 119.87422 * 180.21389 * 16 15 14 40 40 H 1.07998 * 119.89965 * 179.76986 * 17 16 15 41 41 H 0.97004 * 120.00058 * 179.97438 * 23 22 20 42 42 H 1.07997 * 120.12171 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5438 -0.6666 0.0015 6 6 2.2590 -1.0913 0.0005 7 6 1.7973 -2.5258 0.0019 8 1 0.7993 -2.5868 -0.4322 9 8 2.7019 -3.3181 -0.7702 10 6 1.7610 -3.0484 1.4394 11 7 1.3127 -4.4432 1.4408 12 6 1.2029 -5.1146 2.6043 13 8 1.4754 -4.5627 3.6525 14 6 0.7500 -6.5221 2.6057 15 6 0.4298 -7.1561 1.4030 16 6 0.0111 -8.4716 1.4055 17 6 -0.1023 -9.1636 2.5960 18 6 0.2091 -8.5401 3.8008 19 16 0.0621 -9.4269 5.3163 20 6 -1.5622 -8.9428 5.7977 21 1 -2.1642 -8.3386 5.1353 22 6 -2.0678 -9.3380 7.0277 23 7 -1.3339 -10.0741 7.8351 24 14 -3.7896 -8.8242 7.5384 25 1 -4.7742 -9.3514 6.5597 26 1 -4.0898 -9.3704 8.8863 27 1 -3.8734 -7.3421 7.5755 28 6 0.6357 -7.2185 3.8077 29 1 -0.3632 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 4.4055 1.3709 0.0003 33 1 4.4211 -1.2964 0.0018 34 1 3.6110 -3.3106 -0.4408 35 1 2.7588 -2.9874 1.8736 36 1 1.0709 -2.4441 2.0283 37 1 1.0942 -4.8832 0.6044 38 1 0.5126 -6.6179 0.4704 39 1 -0.2325 -8.9604 0.4737 40 1 -0.4339 -10.1914 2.5918 41 1 -1.6873 -10.3501 8.6953 42 1 0.8784 -6.7322 4.7409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413645538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:59 Heat of formation + Delta-G solvation = -8.476762 kcal Electronic energy + Delta-G solvation = -26312.578157 eV Core-core repulsion = 22384.450479 eV Total energy + Delta-G solvation = -3928.127678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37362 -41.23752 -39.31389 -38.43742 -35.57047 -34.65388 -34.31379 -32.63276 -31.94933 -31.71285 -29.16252 -27.74195 -27.65298 -25.43770 -24.10765 -23.38528 -22.16136 -21.83395 -20.92319 -20.01306 -19.14347 -18.70629 -17.33411 -17.29347 -16.99790 -16.93264 -16.66014 -16.33935 -16.17206 -15.79551 -15.67843 -15.29336 -15.12866 -14.67960 -14.60289 -14.54206 -14.26268 -13.94428 -13.64442 -13.53873 -13.27869 -13.23638 -13.07274 -12.96265 -12.67106 -12.56082 -12.38835 -11.88025 -11.75949 -11.47303 -11.25290 -11.15082 -10.74951 -10.35750 -10.34334 -9.90259 -9.69023 -9.57127 -8.80437 -8.39071 -6.19120 -0.17774 0.26796 0.73002 1.29211 1.38501 1.44777 1.51559 1.64500 1.77319 1.80105 2.02589 2.24648 2.80996 2.93821 3.27028 3.33759 3.42214 3.55382 3.67167 3.73784 3.82352 3.95959 4.05599 4.24757 4.35168 4.36805 4.47752 4.49087 4.55527 4.62577 4.70066 4.72767 4.77325 4.93845 5.12580 5.20569 5.23269 5.34199 5.38396 5.52139 5.66238 5.87576 5.97151 6.15415 6.41001 6.55497 6.67465 7.00997 7.09843 8.67671 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.002078 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.149564 B =13473.634963 C =14278.820593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.372 5.372 3 N -0.331 5.331 4 C 0.039 3.961 5 C -0.268 4.268 6 C 0.044 3.956 7 C 0.184 3.816 8 H 0.134 0.866 9 O -0.543 6.543 10 C 0.097 3.903 11 N -0.700 5.700 12 C 0.565 3.435 13 O -0.582 6.582 14 C -0.156 4.156 15 C -0.060 4.060 16 C -0.121 4.121 17 C -0.062 4.062 18 C -0.130 4.130 19 S -0.097 6.097 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.019 3.981 23 N -0.906 5.906 24 Si 0.991 3.009 25 H -0.260 1.260 26 H -0.272 1.272 27 H -0.270 1.270 28 C -0.045 4.045 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.208 0.792 33 H 0.171 0.829 34 H 0.396 0.604 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.420 0.580 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.134 0.866 41 H 0.274 0.726 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 16.370 -23.923 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.156 5.156 3 N -0.153 5.153 4 C -0.146 4.146 5 C -0.297 4.297 6 C -0.085 4.085 7 C 0.122 3.878 8 H 0.152 0.848 9 O -0.350 6.350 10 C -0.027 4.027 11 N -0.353 5.353 12 C 0.353 3.647 13 O -0.462 6.462 14 C -0.161 4.161 15 C -0.079 4.079 16 C -0.140 4.140 17 C -0.083 4.083 18 C -0.241 4.241 19 S 0.138 5.862 20 C -0.683 4.683 21 H 0.086 0.914 22 C -0.187 4.187 23 N -0.542 5.542 24 Si 0.813 3.187 25 H -0.184 1.184 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.067 4.067 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.224 0.776 33 H 0.188 0.812 34 H 0.247 0.753 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.260 0.740 38 H 0.193 0.807 39 H 0.193 0.807 40 H 0.152 0.848 41 H 0.083 0.917 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.047 16.840 -22.800 28.791 hybrid contribution -0.605 0.390 0.618 0.949 sum 4.442 17.231 -22.183 28.438 Atomic orbital electron populations 1.22226 0.72712 1.05794 1.04936 1.48760 1.07644 1.02904 1.56332 1.77354 1.03044 1.09141 1.25788 1.24363 0.95496 0.95872 0.98863 1.21584 0.96895 0.95418 1.15815 1.21845 0.92312 0.91238 1.03149 1.20296 0.95647 0.82057 0.89790 0.84834 1.86623 1.24062 1.68843 1.55470 1.21984 1.01489 0.81972 0.97295 1.45458 1.68214 1.12940 1.08737 1.18348 0.76616 0.86041 0.83685 1.90778 1.51733 1.70315 1.33418 1.19914 1.07566 0.93876 0.94786 1.21729 0.94462 0.94979 0.96684 1.21563 0.99639 0.94471 0.98350 1.22079 0.94149 1.00540 0.91556 1.22499 1.04448 0.97279 0.99915 1.83502 1.23164 1.60180 1.19360 1.23029 0.99638 1.39395 1.06248 0.91394 1.26015 1.03241 0.94480 0.94930 1.70101 1.38881 1.35050 1.10190 0.85106 0.76998 0.78661 0.77927 1.18440 1.19641 1.19558 1.21626 0.94276 0.93073 0.97708 0.88875 0.87721 0.88885 0.77564 0.81152 0.75273 0.90795 0.91268 0.74035 0.80742 0.80695 0.84806 0.91715 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 11.06 127.77 1.41 2.16 16 2 N -0.37 -5.92 4.01 -356.03 -1.43 -7.35 16 3 N -0.33 -6.60 12.58 -57.02 -0.72 -7.32 16 4 C 0.04 0.60 12.03 85.23 1.02 1.62 16 5 C -0.27 -3.55 10.17 21.99 0.22 -3.33 16 6 C 0.04 0.59 6.00 41.40 0.25 0.84 16 7 C 0.18 1.76 3.14 29.85 0.09 1.86 16 8 H 0.13 0.86 7.49 -2.39 -0.02 0.84 16 9 O -0.54 -4.74 12.96 -148.98 -1.93 -6.67 16 10 C 0.10 1.45 5.32 86.38 0.46 1.91 16 11 N -0.70 -12.01 5.40 -465.95 -2.52 -14.52 16 12 C 0.56 16.43 7.77 86.79 0.67 17.10 16 13 O -0.58 -22.69 16.34 -3.88 -0.06 -22.76 16 14 C -0.16 -4.81 5.87 -20.11 -0.12 -4.93 16 15 C -0.06 -1.27 9.54 22.57 0.22 -1.05 16 16 C -0.12 -2.75 10.02 22.21 0.22 -2.53 16 17 C -0.06 -2.10 9.79 22.48 0.22 -1.88 16 18 C -0.13 -5.66 5.45 22.65 0.12 -5.53 16 19 S -0.10 -5.27 21.41 -56.49 -1.21 -6.48 16 20 C -0.54 -31.33 9.46 67.94 0.64 -30.69 16 21 H 0.07 3.91 7.79 -2.91 -0.02 3.89 16 22 C 0.02 1.07 5.49 84.84 0.47 1.53 16 23 N -0.91 -54.67 13.22 21.64 0.29 -54.38 16 24 Si 0.99 44.43 29.55 68.60 2.03 46.46 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 28 C -0.04 -1.86 9.34 22.70 0.21 -1.65 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.56 7.55 -2.39 -0.02 0.54 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.17 1.31 7.58 -2.91 -0.02 1.28 16 34 H 0.40 1.57 8.20 -74.06 -0.61 0.96 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.42 4.46 6.38 -92.71 -0.59 3.87 16 38 H 0.18 1.75 6.40 -2.91 -0.02 1.74 16 39 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 41 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.10 4.85 7.65 -2.91 -0.02 4.83 16 Total: -1.00 -85.66 381.33 0.45 -85.20 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -0.12 Total: 12.39 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 6.12 Total: -24.56 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -4.38 Total: -83.58 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.99 Total: -29.43 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.21 Total: -6.48 kcal Total: -85.66 0.45 -85.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.726 kcal (2) G-P(sol) polarization free energy of solvation -85.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds