Wall clock time and date at job start Wed Apr 1 2020 04:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38351 * 127.15092 * 2 1 4 4 C 1.39771 * 126.56590 * 359.97438 * 3 2 1 5 5 H 1.08004 * 120.00111 * 7.90962 * 4 3 2 6 6 C 1.40084 * 120.00218 * 187.90579 * 4 3 2 7 7 N 1.30817 * 119.99946 * 191.23483 * 6 4 3 8 8 Si 1.86798 * 119.99751 * 11.23165 * 6 4 3 9 9 H 1.48506 * 109.46877 * 270.00124 * 8 6 4 10 10 H 1.48499 * 109.47207 * 29.99996 * 8 6 4 11 11 H 1.48496 * 109.47289 * 150.00071 * 8 6 4 12 12 N 1.33095 * 106.86805 * 179.73687 * 3 2 1 13 13 N 1.28516 * 109.75073 * 0.23892 * 12 3 2 14 14 C 1.32394 * 110.20034 * 0.02562 * 13 12 3 15 15 S 1.76200 * 126.25874 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99813 * 359.97384 * 15 14 13 17 17 C 1.52998 * 109.47038 * 180.02562 * 16 15 14 18 18 O 1.45200 * 109.47505 * 180.02562 * 17 16 15 19 19 C 1.34228 * 117.00548 * 180.02562 * 18 17 16 20 20 O 1.20828 * 119.99652 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00306 * 179.97438 * 19 18 17 22 22 C 1.50691 * 109.47214 * 179.97438 * 21 19 18 23 23 C 1.38241 * 119.99951 * 269.72500 * 22 21 19 24 24 C 1.38241 * 119.99740 * 179.76686 * 23 22 21 25 25 C 1.38239 * 119.99944 * 0.50342 * 24 23 22 26 26 C 1.38233 * 120.00210 * 359.75293 * 25 24 23 27 27 C 1.38232 * 120.00111 * 90.00042 * 22 21 19 28 28 H 1.09004 * 109.46941 * 90.00466 * 1 2 3 29 29 H 1.09008 * 109.47284 * 209.99945 * 1 2 3 30 30 H 1.08993 * 109.47266 * 330.00347 * 1 2 3 31 31 H 0.96998 * 119.99838 * 354.77302 * 7 6 4 32 32 H 1.09004 * 109.47482 * 299.99714 * 16 15 14 33 33 H 1.08994 * 109.47277 * 59.99785 * 16 15 14 34 34 H 1.09003 * 109.47123 * 299.99625 * 17 16 15 35 35 H 1.08994 * 109.47549 * 59.99600 * 17 16 15 36 36 H 1.09000 * 109.46641 * 300.00009 * 21 19 18 37 37 H 1.08999 * 109.47003 * 59.99293 * 21 19 18 38 38 H 1.07990 * 119.99997 * 359.97438 * 23 22 21 39 39 H 1.08000 * 119.99422 * 180.23094 * 24 23 22 40 40 H 1.08003 * 119.99578 * 179.72075 * 25 24 23 41 41 H 1.07997 * 120.00377 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00167 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8679 2.7030 0.1278 6 6 2.8657 3.4536 -0.1673 7 7 2.5435 4.7028 0.0494 8 14 4.6020 3.0155 -0.6990 9 1 5.4387 2.7639 0.5018 10 1 4.5678 1.7943 -1.5433 11 1 5.1797 4.1399 -1.4782 12 7 3.5489 0.6414 0.0058 13 7 3.5370 -0.6438 0.0043 14 6 2.2903 -1.0894 -0.0031 15 16 1.7873 -2.7780 -0.0072 16 6 3.4058 -3.5881 0.0007 17 6 3.2163 -5.1063 -0.0023 18 8 4.5146 -5.7563 0.0046 19 6 4.5243 -7.0986 0.0026 20 8 3.4823 -7.7101 -0.0043 21 6 5.8348 -7.8427 0.0088 22 6 5.5700 -9.3262 0.0056 23 6 5.4478 -10.0091 1.2013 24 6 5.2001 -11.3691 1.1983 25 6 5.0851 -12.0481 -0.0003 26 6 5.2127 -11.3662 -1.1960 27 6 5.4551 -10.0052 -1.1930 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5137 31 1 1.6246 4.9386 0.2514 32 1 3.9655 -3.2906 -0.8862 33 1 3.9560 -3.2920 0.8937 34 1 2.6566 -5.4043 0.8844 35 1 2.6662 -5.4021 -0.8955 36 1 6.4094 -7.5738 -0.8775 37 1 6.3994 -7.5766 0.9024 38 1 5.5424 -9.4795 2.1377 39 1 5.1009 -11.9019 2.1325 40 1 4.8961 -13.1114 -0.0026 41 1 5.1232 -11.8967 -2.1324 42 1 5.5547 -9.4725 -2.1271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473026709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:25 Heat of formation + Delta-G solvation = -5.992830 kcal Electronic energy + Delta-G solvation = -25675.996342 eV Core-core repulsion = 21747.976376 eV Total energy + Delta-G solvation = -3928.019967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97970 -40.82950 -39.37948 -36.83953 -33.98376 -33.64469 -33.43617 -31.88496 -31.24922 -30.05079 -28.31761 -26.80893 -25.49453 -23.75599 -22.95708 -22.31598 -21.44535 -20.86254 -20.20115 -18.24619 -18.02584 -17.28534 -16.98980 -16.75052 -16.30543 -15.58375 -15.52167 -15.30587 -15.11495 -14.49931 -14.19851 -13.87474 -13.76635 -13.57359 -13.50473 -13.13026 -12.85447 -12.80686 -12.62537 -12.56997 -12.17567 -12.13068 -11.98701 -11.53034 -11.37499 -11.15019 -10.94382 -10.76585 -10.74405 -10.47029 -9.97948 -9.66613 -9.43001 -9.25542 -9.14160 -9.09912 -8.71813 -8.44993 -7.48227 -7.17933 -4.87915 0.89046 1.06778 1.46494 1.97031 2.40024 2.74355 2.84719 3.49507 3.50033 3.56606 3.84980 3.98611 4.05960 4.16242 4.34401 4.41892 4.54277 4.64587 4.72096 4.75370 4.76393 4.83891 5.04787 5.05718 5.14492 5.17351 5.27107 5.33558 5.56761 5.59787 5.67509 5.68784 5.84402 5.87040 6.08547 6.15868 6.18467 6.25042 6.32742 6.60163 6.63464 7.07382 7.35747 7.47702 7.51732 8.00257 8.30699 8.51203 9.91428 10.06095 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.001725 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.504421 B =16230.909683 C =16927.700134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.512 5.512 3 C 0.345 3.655 4 C -0.493 4.493 5 H 0.083 0.917 6 C 0.066 3.934 7 N -0.805 5.805 8 Si 1.104 2.896 9 H -0.276 1.276 10 H -0.255 1.255 11 H -0.310 1.310 12 N -0.409 5.409 13 N -0.267 5.267 14 C 0.061 3.939 15 S -0.024 6.024 16 C -0.103 4.103 17 C 0.087 3.913 18 O -0.351 6.351 19 C 0.463 3.537 20 O -0.499 6.499 21 C -0.074 4.074 22 C -0.078 4.078 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.102 4.102 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.284 0.716 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -27.136 -0.390 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.213 5.213 3 C 0.102 3.898 4 C -0.534 4.534 5 H 0.101 0.899 6 C -0.157 4.157 7 N -0.429 5.429 8 Si 0.932 3.068 9 H -0.202 1.202 10 H -0.180 1.180 11 H -0.240 1.240 12 N -0.259 5.259 13 N -0.111 5.111 14 C -0.313 4.313 15 S 0.202 5.798 16 C -0.252 4.252 17 C 0.012 3.988 18 O -0.268 6.268 19 C 0.305 3.695 20 O -0.386 6.386 21 C -0.112 4.112 22 C -0.078 4.078 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.135 4.135 26 C -0.138 4.138 27 C -0.120 4.120 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.426 -27.103 -0.629 27.469 hybrid contribution -2.327 0.195 0.460 2.380 sum 2.100 -26.907 -0.170 26.989 Atomic orbital electron populations 1.21551 0.77722 1.02965 1.02088 1.45836 1.06424 1.04813 1.64206 1.21668 0.85048 0.88991 0.94094 1.19382 0.97921 0.87250 1.48819 0.89862 1.27320 1.07398 0.91354 0.89635 1.70656 1.22438 1.19066 1.30724 0.82911 0.71131 0.73828 0.78938 1.20245 1.18037 1.23957 1.74231 1.16006 1.00765 1.34916 1.74282 1.15314 1.05741 1.15748 1.25221 0.91003 0.92830 1.22199 1.84409 1.08352 0.91390 1.95631 1.23199 0.99082 0.94208 1.08758 1.22647 0.82231 0.90277 1.03674 1.86488 1.35270 1.21169 1.83837 1.23563 0.92156 0.80968 0.72862 1.90705 1.34546 1.68771 1.44579 1.20325 0.93115 0.90629 1.07096 1.19278 1.01330 0.93224 0.93943 1.21034 0.99017 0.94635 0.97366 1.21131 1.00029 0.94383 0.98231 1.21196 0.99714 0.99991 0.92639 1.21130 1.00033 0.94355 0.98257 1.21032 0.99026 0.94643 0.97334 0.92056 0.91191 0.90223 0.90459 0.87731 0.87765 0.90214 0.90179 0.86478 0.86490 0.85975 0.85904 0.86041 0.85900 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.76 10.89 59.85 0.65 2.41 16 2 N -0.51 -11.70 3.26 -123.18 -0.40 -12.10 16 3 C 0.34 9.10 7.21 -154.82 -1.12 7.98 16 4 C -0.49 -13.08 9.47 -38.32 -0.36 -13.44 16 5 H 0.08 2.14 7.46 -52.48 -0.39 1.75 16 6 C 0.07 1.76 5.52 -17.29 -0.10 1.67 16 7 N -0.81 -21.40 13.65 55.56 0.76 -20.64 16 8 Si 1.10 27.34 26.40 -169.99 -4.49 22.86 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.26 -6.58 6.25 56.52 0.35 -6.22 16 11 H -0.31 -7.34 7.11 56.52 0.40 -6.94 16 12 N -0.41 -11.24 7.50 31.26 0.23 -11.00 16 13 N -0.27 -6.74 11.62 30.89 0.36 -6.38 16 14 C 0.06 1.36 8.09 -87.27 -0.71 0.65 16 15 S -0.02 -0.39 21.79 -107.50 -2.34 -2.73 16 16 C -0.10 -1.49 5.60 37.16 0.21 -1.29 16 17 C 0.09 1.06 5.47 37.16 0.20 1.26 16 18 O -0.35 -4.14 10.22 -39.25 -0.40 -4.54 16 19 C 0.46 5.08 7.95 36.01 0.29 5.37 16 20 O -0.50 -6.93 15.78 -18.75 -0.30 -7.23 16 21 C -0.07 -0.54 5.94 -29.04 -0.17 -0.72 16 22 C -0.08 -0.66 4.37 -104.63 -0.46 -1.12 16 23 C -0.10 -0.84 9.70 -39.58 -0.38 -1.22 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 26 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 27 C -0.10 -0.84 9.70 -39.58 -0.38 -1.22 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.04 7.85 -51.92 -0.41 0.64 16 30 H 0.08 1.34 7.47 -51.93 -0.39 0.95 16 31 H 0.28 7.17 8.73 -40.82 -0.36 6.82 16 32 H 0.10 1.59 8.14 -51.91 -0.42 1.17 16 33 H 0.10 1.59 8.14 -51.92 -0.42 1.16 16 34 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 35 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 36 H 0.12 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.12 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -33.43 379.40 -9.83 -43.26 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -5.45 Total: -3.70 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -3.52 Total: -3.51 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.95 Total: -50.12 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.70 Total: -11.77 kcal Atomic # 14 Polarization: 27.34 SS G_CDS: -4.49 Total: 22.86 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.34 Total: -2.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.43 -9.83 -43.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473026709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.270 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds