Wall clock time and date at job start Wed Apr 1 2020 04:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38351 * 127.15092 * 2 1 4 4 C 1.39771 * 126.56590 * 359.97438 * 3 2 1 5 5 H 1.08004 * 120.00111 * 7.90962 * 4 3 2 6 6 C 1.40084 * 120.00218 * 187.90579 * 4 3 2 7 7 N 1.30817 * 119.99946 * 191.23483 * 6 4 3 8 8 Si 1.86798 * 119.99751 * 11.23165 * 6 4 3 9 9 H 1.48506 * 109.46877 * 270.00124 * 8 6 4 10 10 H 1.48499 * 109.47207 * 29.99996 * 8 6 4 11 11 H 1.48496 * 109.47289 * 150.00071 * 8 6 4 12 12 N 1.33095 * 106.86805 * 179.73687 * 3 2 1 13 13 N 1.28516 * 109.75073 * 0.23892 * 12 3 2 14 14 C 1.32394 * 110.20034 * 0.02562 * 13 12 3 15 15 S 1.76200 * 126.25874 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99813 * 359.97384 * 15 14 13 17 17 C 1.52998 * 109.47038 * 180.02562 * 16 15 14 18 18 O 1.45200 * 109.47505 * 180.02562 * 17 16 15 19 19 C 1.34228 * 117.00548 * 180.02562 * 18 17 16 20 20 O 1.20828 * 119.99652 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00306 * 179.97438 * 19 18 17 22 22 C 1.50691 * 109.47214 * 179.97438 * 21 19 18 23 23 C 1.38241 * 119.99951 * 269.72500 * 22 21 19 24 24 C 1.38241 * 119.99740 * 179.76686 * 23 22 21 25 25 C 1.38239 * 119.99944 * 0.50342 * 24 23 22 26 26 C 1.38233 * 120.00210 * 359.75293 * 25 24 23 27 27 C 1.38232 * 120.00111 * 90.00042 * 22 21 19 28 28 H 1.09004 * 109.46941 * 90.00466 * 1 2 3 29 29 H 1.09008 * 109.47284 * 209.99945 * 1 2 3 30 30 H 1.08993 * 109.47266 * 330.00347 * 1 2 3 31 31 H 0.96998 * 119.99838 * 354.77302 * 7 6 4 32 32 H 1.09004 * 109.47482 * 299.99714 * 16 15 14 33 33 H 1.08994 * 109.47277 * 59.99785 * 16 15 14 34 34 H 1.09003 * 109.47123 * 299.99625 * 17 16 15 35 35 H 1.08994 * 109.47549 * 59.99600 * 17 16 15 36 36 H 1.09000 * 109.46641 * 300.00009 * 21 19 18 37 37 H 1.08999 * 109.47003 * 59.99293 * 21 19 18 38 38 H 1.07990 * 119.99997 * 359.97438 * 23 22 21 39 39 H 1.08000 * 119.99422 * 180.23094 * 24 23 22 40 40 H 1.08003 * 119.99578 * 179.72075 * 25 24 23 41 41 H 1.07997 * 120.00377 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00167 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8679 2.7030 0.1278 6 6 2.8657 3.4536 -0.1673 7 7 2.5435 4.7028 0.0494 8 14 4.6020 3.0155 -0.6990 9 1 5.4387 2.7639 0.5018 10 1 4.5678 1.7943 -1.5433 11 1 5.1797 4.1399 -1.4782 12 7 3.5489 0.6414 0.0058 13 7 3.5370 -0.6438 0.0043 14 6 2.2903 -1.0894 -0.0031 15 16 1.7873 -2.7780 -0.0072 16 6 3.4058 -3.5881 0.0007 17 6 3.2163 -5.1063 -0.0023 18 8 4.5146 -5.7563 0.0046 19 6 4.5243 -7.0986 0.0026 20 8 3.4823 -7.7101 -0.0043 21 6 5.8348 -7.8427 0.0088 22 6 5.5700 -9.3262 0.0056 23 6 5.4478 -10.0091 1.2013 24 6 5.2001 -11.3691 1.1983 25 6 5.0851 -12.0481 -0.0003 26 6 5.2127 -11.3662 -1.1960 27 6 5.4551 -10.0052 -1.1930 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5137 31 1 1.6246 4.9386 0.2514 32 1 3.9655 -3.2906 -0.8862 33 1 3.9560 -3.2920 0.8937 34 1 2.6566 -5.4043 0.8844 35 1 2.6662 -5.4021 -0.8955 36 1 6.4094 -7.5738 -0.8775 37 1 6.3994 -7.5766 0.9024 38 1 5.5424 -9.4795 2.1377 39 1 5.1009 -11.9019 2.1325 40 1 4.8961 -13.1114 -0.0026 41 1 5.1232 -11.8967 -2.1324 42 1 5.5547 -9.4725 -2.1271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473026709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:24 Heat of formation + Delta-G solvation = -22.851618 kcal Electronic energy + Delta-G solvation = -25676.727394 eV Core-core repulsion = 21747.976376 eV Total energy + Delta-G solvation = -3928.751019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.85269 -41.68598 -39.97189 -37.76912 -35.93535 -35.42018 -34.07348 -32.95078 -31.96774 -31.78085 -28.96231 -28.44037 -27.30294 -24.80723 -23.49616 -23.37365 -23.03708 -22.03583 -21.58285 -20.19303 -18.91331 -18.38523 -17.90387 -17.80584 -17.16126 -17.06704 -16.86369 -16.22262 -16.07534 -15.84918 -15.59164 -15.44434 -15.07346 -14.68967 -14.28630 -14.24085 -14.18337 -14.01769 -13.65455 -13.53934 -13.42932 -13.17974 -13.05414 -12.98470 -12.83564 -12.05076 -12.01797 -11.88625 -11.84394 -11.74890 -11.62987 -11.54470 -11.38487 -10.89646 -10.56199 -10.36147 -9.80942 -9.70444 -9.49415 -8.75130 -6.85497 0.02524 0.36771 0.51331 0.95418 0.97332 1.13104 1.51428 1.61765 1.85000 1.96271 2.08447 2.21111 2.40009 2.91277 3.04014 3.48750 3.58850 3.69116 3.89978 3.91991 3.92981 4.15021 4.19307 4.28751 4.33476 4.33659 4.45562 4.47401 4.55784 4.55967 4.63980 4.67729 4.71777 4.76073 5.07585 5.15478 5.22640 5.35747 5.37346 5.55058 5.61842 5.62755 5.68098 6.00300 6.11183 6.39459 6.56974 6.65457 7.92067 8.14590 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.001725 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.504421 B =16230.909683 C =16927.700134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.514 5.514 3 C 0.325 3.675 4 C -0.510 4.510 5 H 0.083 0.917 6 C 0.043 3.957 7 N -0.822 5.822 8 Si 1.137 2.863 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.295 1.295 12 N -0.440 5.440 13 N -0.307 5.307 14 C 0.074 3.926 15 S 0.032 5.968 16 C -0.102 4.102 17 C 0.093 3.907 18 O -0.354 6.354 19 C 0.465 3.535 20 O -0.531 6.531 21 C -0.069 4.069 22 C -0.093 4.093 23 C -0.118 4.118 24 C -0.131 4.131 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.118 4.118 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.286 0.714 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 -29.539 -0.483 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.214 5.214 3 C 0.078 3.922 4 C -0.551 4.551 5 H 0.101 0.899 6 C -0.177 4.177 7 N -0.447 5.447 8 Si 0.964 3.036 9 H -0.213 1.213 10 H -0.200 1.200 11 H -0.224 1.224 12 N -0.289 5.289 13 N -0.150 5.150 14 C -0.301 4.301 15 S 0.258 5.742 16 C -0.251 4.251 17 C 0.018 3.982 18 O -0.271 6.271 19 C 0.309 3.691 20 O -0.420 6.420 21 C -0.106 4.106 22 C -0.093 4.093 23 C -0.136 4.136 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.149 4.149 27 C -0.136 4.136 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.018 -29.493 -0.724 29.774 hybrid contribution -2.281 0.621 0.496 2.416 sum 1.737 -28.872 -0.228 28.925 Atomic orbital electron populations 1.21926 0.74631 1.04643 1.03854 1.46200 1.08403 1.04094 1.62708 1.21740 0.85630 0.89829 0.94971 1.19381 0.97920 0.87629 1.50196 0.89873 1.27761 1.08657 0.91542 0.89721 1.70653 1.22732 1.19130 1.32191 0.82428 0.69893 0.73171 0.78083 1.21284 1.20021 1.22382 1.74108 1.17131 1.02062 1.35590 1.74215 1.16999 1.05032 1.18722 1.26361 0.90434 0.95703 1.17572 1.84266 1.08743 0.86476 1.94729 1.23227 0.97999 0.95731 1.08137 1.22498 0.82788 0.88593 1.04366 1.86498 1.34803 1.21902 1.83934 1.24270 0.93031 0.80330 0.71481 1.90692 1.35956 1.69085 1.46229 1.20465 0.91400 0.89537 1.09178 1.19473 1.01846 0.93799 0.94203 1.21303 0.99257 0.95221 0.97856 1.21440 0.99762 0.94477 0.99211 1.21521 0.99212 1.01118 0.92523 1.21439 0.99761 0.94443 0.99239 1.21301 0.99272 0.95233 0.97820 0.90187 0.88239 0.89881 0.90244 0.88420 0.88426 0.89527 0.89501 0.84300 0.84315 0.85012 0.84266 0.84125 0.84261 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.97 10.89 127.77 1.39 4.36 16 2 N -0.51 -22.84 3.26 -543.62 -1.77 -24.61 16 3 C 0.33 17.18 7.21 133.23 0.96 18.14 16 4 C -0.51 -27.33 9.47 23.09 0.22 -27.11 16 5 H 0.08 4.31 7.46 -2.91 -0.02 4.29 16 6 C 0.04 2.35 5.52 85.29 0.47 2.82 16 7 N -0.82 -44.00 13.65 21.86 0.30 -43.70 16 8 Si 1.14 56.62 26.40 68.60 1.81 58.43 16 9 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 10 H -0.27 -14.37 6.25 99.48 0.62 -13.75 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 N -0.44 -24.38 7.50 -55.02 -0.41 -24.80 16 13 N -0.31 -15.43 11.62 -56.17 -0.65 -16.08 16 14 C 0.07 3.19 8.09 179.18 1.45 4.64 16 15 S 0.03 0.97 21.79 -56.49 -1.23 -0.26 16 16 C -0.10 -2.75 5.60 71.98 0.40 -2.35 16 17 C 0.09 2.07 5.47 71.98 0.39 2.46 16 18 O -0.35 -7.69 10.22 -51.40 -0.53 -8.22 16 19 C 0.46 9.40 7.95 71.24 0.57 9.97 16 20 O -0.53 -14.02 15.78 21.96 0.35 -13.68 16 21 C -0.07 -0.87 5.94 29.10 0.17 -0.70 16 22 C -0.09 -1.45 4.37 -19.87 -0.09 -1.54 16 23 C -0.12 -1.79 9.70 22.27 0.22 -1.57 16 24 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 25 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 26 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 27 C -0.12 -1.79 9.70 22.27 0.22 -1.57 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.10 2.62 7.85 -2.38 -0.02 2.60 16 30 H 0.08 2.65 7.47 -2.39 -0.02 2.64 16 31 H 0.29 14.60 8.73 -92.71 -0.81 13.79 16 32 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.10 2.83 8.14 -2.40 -0.02 2.81 16 34 H 0.09 1.83 8.13 -2.39 -0.02 1.81 16 35 H 0.09 1.83 8.13 -2.39 -0.02 1.82 16 36 H 0.14 1.14 8.09 -2.39 -0.02 1.12 16 37 H 0.14 1.14 8.08 -2.39 -0.02 1.12 16 38 H 0.13 1.59 8.06 -2.92 -0.02 1.57 16 39 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -72.33 379.40 5.82 -66.50 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 0.92 Total: 3.43 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 7.04 Total: 2.98 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -2.54 Total: -109.19 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.18 Total: -21.90 kcal Atomic # 14 Polarization: 56.62 SS G_CDS: 1.81 Total: 58.43 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -1.23 Total: -0.26 kcal Total: -72.33 5.82 -66.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473026709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.653 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds