Wall clock time and date at job start Wed Apr 1 2020 04:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21312 * 119.99621 * 2 1 4 4 N 1.34772 * 120.00154 * 179.97438 * 2 1 3 5 5 C 1.40160 * 120.00209 * 185.32345 * 4 2 1 6 6 C 1.35938 * 119.99911 * 185.40268 * 5 4 2 7 7 C 1.41670 * 119.99864 * 183.78727 * 6 5 4 8 8 C 1.36964 * 125.47526 * 174.22353 * 7 6 5 9 9 C 1.37585 * 113.20649 * 179.97438 * 8 7 6 10 10 C 1.33741 * 115.11680 * 0.02562 * 9 8 7 11 11 S 1.70600 * 111.03397 * 359.71951 * 10 9 8 12 12 C 1.46421 * 119.99650 * 5.40230 * 5 4 2 13 13 O 1.21745 * 119.99738 * 264.25622 * 12 5 4 14 14 N 1.34778 * 119.99705 * 84.26529 * 12 5 4 15 15 C 1.46494 * 119.99503 * 184.01278 * 14 12 5 16 16 C 1.50707 * 109.47286 * 90.00064 * 15 14 12 17 17 H 1.07999 * 119.99919 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00149 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99933 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 119.99799 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47119 * 60.00194 * 20 18 16 22 22 H 1.48505 * 109.47064 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47490 * 299.99756 * 20 18 16 24 24 C 1.46498 * 120.00392 * 4.01208 * 14 12 5 25 25 C 1.52997 * 109.47310 * 95.45440 * 24 14 12 26 26 C 1.47194 * 109.47415 * 184.76395 * 25 24 14 27 27 N 6.40624 * 114.56781 * 116.47768 * 2 1 3 28 28 H 1.09000 * 109.47112 * 185.00040 * 1 2 3 29 29 H 1.09003 * 109.47667 * 305.00465 * 1 2 3 30 30 H 1.09007 * 109.46928 * 65.00187 * 1 2 3 31 31 H 0.97001 * 119.99944 * 5.32016 * 4 2 1 32 32 H 1.08003 * 120.00096 * 3.78053 * 6 5 4 33 33 H 1.08008 * 123.39907 * 0.02562 * 8 7 6 34 34 H 1.07995 * 122.44338 * 180.02562 * 9 8 7 35 35 H 1.08000 * 124.48280 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47481 * 209.99618 * 15 14 12 37 37 H 1.09004 * 109.47397 * 329.99791 * 15 14 12 38 38 H 0.96998 * 120.00148 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.47258 * 215.45639 * 24 14 12 40 40 H 1.09005 * 109.47115 * 335.45421 * 24 14 12 41 41 H 1.09001 * 109.46951 * 304.76697 * 25 24 14 42 42 H 1.09005 * 109.46665 * 64.76249 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5780 -1.1697 0.1131 6 6 4.2665 -2.3367 0.0035 7 6 5.6699 -2.3519 0.1970 8 6 6.4564 -3.4729 0.2242 9 6 7.7884 -3.1958 0.4285 10 6 8.0840 -1.8985 0.5643 11 16 6.6828 -0.9342 0.4333 12 6 4.2957 0.0846 0.3488 13 8 4.7694 0.7002 -0.5886 14 7 4.4321 0.5574 1.6036 15 6 5.0726 1.8549 1.8317 16 6 4.0290 2.9419 1.8053 17 1 2.9924 2.6912 1.6352 18 6 4.3977 4.2564 1.9984 19 7 5.6601 4.5617 2.2050 20 14 3.1043 5.6037 1.9650 21 1 2.1003 5.3525 3.0300 22 1 3.7534 6.9189 2.1976 23 1 2.4308 5.6107 0.6415 24 6 3.9398 -0.2263 2.7392 25 6 5.0876 -1.0500 3.3264 26 6 4.5700 -1.9224 4.3930 27 7 4.1705 -2.5976 5.2152 28 1 -0.3633 -1.0238 0.0896 29 1 -0.3634 0.5895 0.8418 30 1 -0.3633 0.4343 -0.9315 31 1 1.6990 -2.0054 -0.0770 32 1 3.7437 -3.2522 -0.2309 33 1 6.0700 -4.4735 0.0973 34 1 8.5405 -3.9693 0.4759 35 1 9.0789 -1.5121 0.7296 36 1 5.5676 1.8501 2.8028 37 1 5.8090 2.0392 1.0494 38 1 5.9194 5.4864 2.3412 39 1 3.5479 0.4463 3.5022 40 1 3.1475 -0.8951 2.4030 41 1 5.5346 -1.6609 2.5421 42 1 5.8417 -0.3797 3.7391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001543481816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:06 Heat of formation + Delta-G solvation = 22.892564 kcal Electronic energy + Delta-G solvation = -29296.106539 eV Core-core repulsion = 25369.339137 eV Total energy + Delta-G solvation = -3926.767402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62574 -38.70652 -37.72989 -36.80031 -35.55216 -35.18281 -32.84351 -32.47647 -30.79928 -30.10393 -27.96421 -27.12140 -24.46907 -24.02207 -23.46014 -21.42447 -21.22185 -19.35328 -18.49389 -17.64440 -17.52935 -16.77485 -16.39047 -16.26764 -15.98888 -15.27328 -15.22195 -14.74680 -14.67267 -14.16436 -13.98203 -13.80037 -13.59550 -13.20709 -12.99398 -12.75011 -12.62574 -12.48668 -12.43772 -12.39988 -12.29378 -12.01029 -11.78489 -11.60152 -11.35432 -11.14065 -10.88498 -10.81982 -10.54612 -10.20087 -10.06104 -9.80094 -9.59127 -9.51845 -9.17557 -8.35133 -8.32336 -7.65466 -7.33563 -5.96646 -3.97636 0.57384 1.86793 2.06574 2.29061 2.70802 2.77260 2.81742 2.87507 3.16828 3.37908 3.42205 3.46622 3.53090 3.69791 4.19340 4.51943 4.67560 4.87295 5.02661 5.10711 5.18049 5.23489 5.27885 5.31307 5.38868 5.47382 5.52615 5.64219 5.71044 5.78366 5.84192 5.87302 6.10718 6.26384 6.43432 6.56534 6.68142 6.94136 7.26130 7.39359 7.49857 7.63416 7.99828 8.15995 8.21257 8.32249 8.78908 9.11260 9.66069 11.12076 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.005052 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.666392 B = 5540.846881 C = 6193.763296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.483 3.517 3 O -0.459 6.459 4 N -0.661 5.661 5 C 0.100 3.900 6 C -0.128 4.128 7 C -0.180 4.180 8 C -0.133 4.133 9 C -0.145 4.145 10 C -0.290 4.290 11 S 0.261 5.739 12 C 0.559 3.441 13 O -0.497 6.497 14 N -0.576 5.576 15 C 0.248 3.752 16 C -0.514 4.514 17 H 0.068 0.932 18 C 0.059 3.941 19 N -0.900 5.900 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.277 1.277 24 C 0.120 3.880 25 C -0.060 4.060 26 C 0.221 3.779 27 N -0.447 5.447 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.410 0.590 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.035 0.965 37 H 0.049 0.951 38 H 0.262 0.738 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 -16.723 -2.950 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.270 3.730 3 O -0.328 6.328 4 N -0.308 5.308 5 C -0.003 4.003 6 C -0.154 4.154 7 C -0.298 4.298 8 C -0.165 4.165 9 C -0.176 4.176 10 C -0.428 4.428 11 S 0.533 5.467 12 C 0.343 3.657 13 O -0.372 6.372 14 N -0.308 5.308 15 C 0.130 3.870 16 C -0.553 4.553 17 H 0.086 0.914 18 C -0.142 4.142 19 N -0.540 5.540 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.203 1.203 24 C -0.006 4.006 25 C -0.102 4.102 26 C -0.097 4.097 27 N -0.125 5.125 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.247 0.753 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.175 0.825 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.344 -14.764 -2.108 15.533 hybrid contribution -0.412 -1.132 -0.495 1.303 sum -4.756 -15.896 -2.603 16.795 Atomic orbital electron populations 1.21806 0.90461 1.04189 1.05863 1.21308 0.91269 0.83530 0.76876 1.91069 1.68948 1.29787 1.43015 1.43894 1.04147 1.10470 1.72255 1.20473 0.84099 0.95580 1.00112 1.19609 0.91072 0.96171 1.08590 1.22405 0.96968 0.97864 1.12587 1.20604 0.92756 0.98080 1.05029 1.19804 0.96397 0.95969 1.05415 1.25682 1.06357 0.99507 1.11204 1.85139 0.93997 1.04432 1.63172 1.17296 0.80670 0.83233 0.84528 1.90879 1.48210 1.56710 1.41448 1.48063 1.58494 1.20971 1.03225 1.19389 0.93581 0.76412 0.97622 1.21484 0.94901 0.91013 1.47899 0.91358 1.24888 0.95311 0.98484 0.95481 1.69913 1.15515 1.18862 1.49662 0.86589 0.81612 0.80814 0.78541 1.20493 1.21497 1.20255 1.21244 0.93821 0.94585 0.90989 1.20116 1.00673 0.96422 0.92951 1.29073 0.93267 0.93476 0.93835 1.81195 1.09243 1.10864 1.11178 0.90590 0.88156 0.88442 0.75305 0.84473 0.84499 0.85361 0.82546 0.94692 0.93343 0.92883 0.88686 0.91180 0.87360 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 10.38 36.01 0.37 -1.03 16 2 C 0.48 6.78 7.87 -10.99 -0.09 6.69 16 3 O -0.46 -9.51 13.45 -9.59 -0.13 -9.64 16 4 N -0.66 -7.67 5.25 -8.54 -0.04 -7.71 16 5 C 0.10 1.49 4.54 -81.58 -0.37 1.12 16 6 C -0.13 -1.60 9.75 -39.10 -0.38 -1.98 16 7 C -0.18 -2.46 4.79 -38.73 -0.19 -2.65 16 8 C -0.13 -1.59 10.25 -40.28 -0.41 -2.00 16 9 C -0.14 -1.75 10.15 -41.40 -0.42 -2.17 16 10 C -0.29 -3.87 10.91 29.15 0.32 -3.55 16 11 S 0.26 4.17 15.81 -107.50 -1.70 2.47 16 12 C 0.56 10.93 1.19 -12.97 -0.02 10.92 16 13 O -0.50 -11.98 15.00 -9.97 -0.15 -12.13 16 14 N -0.58 -11.09 1.64 -176.69 -0.29 -11.38 16 15 C 0.25 5.97 5.21 -5.19 -0.03 5.94 16 16 C -0.51 -14.05 9.39 -34.44 -0.32 -14.37 16 17 H 0.07 1.91 6.78 -52.49 -0.36 1.56 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 C 0.12 1.82 5.31 -4.04 -0.02 1.80 16 25 C -0.06 -0.77 5.74 -29.52 -0.17 -0.94 16 26 C 0.22 2.99 15.43 -20.75 -0.32 2.67 16 27 N -0.45 -6.89 18.54 42.17 0.78 -6.11 16 28 H 0.08 0.37 7.94 -51.93 -0.41 -0.04 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.41 2.78 8.56 -40.82 -0.35 2.43 16 32 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 33 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 40 H 0.07 0.94 6.48 -51.93 -0.34 0.61 16 41 H 0.11 1.38 4.79 -51.93 -0.25 1.14 16 42 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -36.49 373.30 -7.35 -43.84 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.02 Total: 1.35 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.14 Total: 2.01 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 1.18 Total: -50.52 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.28 Total: -21.76 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.70 Total: 2.47 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.49 -7.35 -43.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543481816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.730 kcal (2) G-P(sol) polarization free energy of solvation -36.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds