Wall clock time and date at job start Wed Apr 1 2020 04:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21312 * 119.99621 * 2 1 4 4 N 1.34772 * 120.00154 * 179.97438 * 2 1 3 5 5 C 1.40160 * 120.00209 * 185.32345 * 4 2 1 6 6 C 1.35938 * 119.99911 * 185.40268 * 5 4 2 7 7 C 1.41670 * 119.99864 * 183.78727 * 6 5 4 8 8 C 1.36964 * 125.47526 * 174.22353 * 7 6 5 9 9 C 1.37585 * 113.20649 * 179.97438 * 8 7 6 10 10 C 1.33741 * 115.11680 * 0.02562 * 9 8 7 11 11 S 1.70600 * 111.03397 * 359.71951 * 10 9 8 12 12 C 1.46421 * 119.99650 * 5.40230 * 5 4 2 13 13 O 1.21745 * 119.99738 * 264.25622 * 12 5 4 14 14 N 1.34778 * 119.99705 * 84.26529 * 12 5 4 15 15 C 1.46494 * 119.99503 * 184.01278 * 14 12 5 16 16 C 1.50707 * 109.47286 * 90.00064 * 15 14 12 17 17 H 1.07999 * 119.99919 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00149 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99933 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 119.99799 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47119 * 60.00194 * 20 18 16 22 22 H 1.48505 * 109.47064 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47490 * 299.99756 * 20 18 16 24 24 C 1.46498 * 120.00392 * 4.01208 * 14 12 5 25 25 C 1.52997 * 109.47310 * 95.45440 * 24 14 12 26 26 C 1.47194 * 109.47415 * 184.76395 * 25 24 14 27 27 N 6.40624 * 114.56781 * 116.47768 * 2 1 3 28 28 H 1.09000 * 109.47112 * 185.00040 * 1 2 3 29 29 H 1.09003 * 109.47667 * 305.00465 * 1 2 3 30 30 H 1.09007 * 109.46928 * 65.00187 * 1 2 3 31 31 H 0.97001 * 119.99944 * 5.32016 * 4 2 1 32 32 H 1.08003 * 120.00096 * 3.78053 * 6 5 4 33 33 H 1.08008 * 123.39907 * 0.02562 * 8 7 6 34 34 H 1.07995 * 122.44338 * 180.02562 * 9 8 7 35 35 H 1.08000 * 124.48280 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47481 * 209.99618 * 15 14 12 37 37 H 1.09004 * 109.47397 * 329.99791 * 15 14 12 38 38 H 0.96998 * 120.00148 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.47258 * 215.45639 * 24 14 12 40 40 H 1.09005 * 109.47115 * 335.45421 * 24 14 12 41 41 H 1.09001 * 109.46951 * 304.76697 * 25 24 14 42 42 H 1.09005 * 109.46665 * 64.76249 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5780 -1.1697 0.1131 6 6 4.2665 -2.3367 0.0035 7 6 5.6699 -2.3519 0.1970 8 6 6.4564 -3.4729 0.2242 9 6 7.7884 -3.1958 0.4285 10 6 8.0840 -1.8985 0.5643 11 16 6.6828 -0.9342 0.4333 12 6 4.2957 0.0846 0.3488 13 8 4.7694 0.7002 -0.5886 14 7 4.4321 0.5574 1.6036 15 6 5.0726 1.8549 1.8317 16 6 4.0290 2.9419 1.8053 17 1 2.9924 2.6912 1.6352 18 6 4.3977 4.2564 1.9984 19 7 5.6601 4.5617 2.2050 20 14 3.1043 5.6037 1.9650 21 1 2.1003 5.3525 3.0300 22 1 3.7534 6.9189 2.1976 23 1 2.4308 5.6107 0.6415 24 6 3.9398 -0.2263 2.7392 25 6 5.0876 -1.0500 3.3264 26 6 4.5700 -1.9224 4.3930 27 7 4.1705 -2.5976 5.2152 28 1 -0.3633 -1.0238 0.0896 29 1 -0.3634 0.5895 0.8418 30 1 -0.3633 0.4343 -0.9315 31 1 1.6990 -2.0054 -0.0770 32 1 3.7437 -3.2522 -0.2309 33 1 6.0700 -4.4735 0.0973 34 1 8.5405 -3.9693 0.4759 35 1 9.0789 -1.5121 0.7296 36 1 5.5676 1.8501 2.8028 37 1 5.8090 2.0392 1.0494 38 1 5.9194 5.4864 2.3412 39 1 3.5479 0.4463 3.5022 40 1 3.1475 -0.8951 2.4030 41 1 5.5346 -1.6609 2.5421 42 1 5.8417 -0.3797 3.7391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543481816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:06 Heat of formation + Delta-G solvation = -1.171364 kcal Electronic energy + Delta-G solvation = -29297.150029 eV Core-core repulsion = 25369.339137 eV Total energy + Delta-G solvation = -3927.810892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.83018 -40.00187 -38.75959 -38.02810 -36.75062 -36.61482 -34.75355 -33.65122 -32.20222 -30.97274 -29.47435 -28.43804 -25.82987 -25.39629 -24.83458 -22.82352 -22.24697 -20.37428 -19.81396 -18.84451 -18.59788 -18.30732 -18.02481 -17.46477 -17.31941 -16.58289 -16.32347 -16.18222 -15.92814 -15.64600 -15.40821 -14.87549 -14.82398 -14.35669 -14.26288 -13.97255 -13.84076 -13.63158 -13.58142 -13.42243 -13.31199 -13.24229 -13.11854 -12.98726 -12.73592 -12.69116 -12.56477 -12.36220 -12.10551 -11.97055 -11.61316 -11.23568 -10.97457 -10.72535 -10.53903 -10.51290 -9.67165 -9.10224 -8.39405 -8.10975 -6.18998 -0.48502 0.79634 1.03942 1.18777 1.37453 1.42219 1.49012 1.61155 1.67141 1.75692 1.79757 2.16387 2.32269 2.37214 2.50439 3.02376 3.20024 3.55706 3.90364 3.96862 4.01905 4.27109 4.32395 4.37942 4.49897 4.55891 4.66143 4.70611 4.77056 4.78553 4.89670 4.91831 5.07775 5.14420 5.28407 5.37670 5.46962 5.54872 5.69105 5.75946 5.91918 6.24001 6.42137 6.51652 6.70241 6.90728 7.20808 7.36623 7.51506 8.95833 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.005052 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.666392 B = 5540.846881 C = 6193.763296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.476 3.524 3 O -0.540 6.540 4 N -0.639 5.639 5 C 0.064 3.936 6 C -0.091 4.091 7 C -0.193 4.193 8 C -0.107 4.107 9 C -0.141 4.141 10 C -0.283 4.283 11 S 0.155 5.845 12 C 0.566 3.434 13 O -0.560 6.560 14 N -0.576 5.576 15 C 0.269 3.731 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.929 5.929 20 Si 0.954 3.046 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.287 1.287 24 C 0.119 3.881 25 C -0.045 4.045 26 C 0.245 3.755 27 N -0.472 5.472 28 H 0.122 0.878 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.437 0.563 32 H 0.190 0.810 33 H 0.178 0.822 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.031 0.969 37 H 0.007 0.993 38 H 0.262 0.738 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 -20.835 -2.781 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.266 3.734 3 O -0.415 6.415 4 N -0.288 5.288 5 C -0.039 4.039 6 C -0.117 4.117 7 C -0.311 4.311 8 C -0.138 4.138 9 C -0.172 4.172 10 C -0.421 4.421 11 S 0.426 5.574 12 C 0.353 3.647 13 O -0.439 6.439 14 N -0.307 5.307 15 C 0.149 3.851 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.190 4.190 19 N -0.571 5.571 20 Si 0.780 3.220 21 H -0.188 1.188 22 H -0.206 1.206 23 H -0.213 1.213 24 C -0.006 4.006 25 C -0.087 4.087 26 C -0.072 4.072 27 N -0.150 5.150 28 H 0.141 0.859 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.279 0.721 32 H 0.207 0.793 33 H 0.196 0.804 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.049 0.951 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.135 0.865 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.893 -18.977 -1.908 19.962 hybrid contribution 0.226 -0.053 -0.603 0.646 sum -5.667 -19.030 -2.511 20.014 Atomic orbital electron populations 1.21842 0.86138 1.07235 1.05983 1.22325 0.93306 0.82871 0.74889 1.91045 1.70707 1.32633 1.47077 1.43685 1.02785 1.11176 1.71195 1.19990 0.85578 0.93939 1.04359 1.20112 0.90397 0.96886 1.04291 1.22571 0.97507 0.96560 1.14500 1.21105 0.92235 0.99059 1.01424 1.20258 0.97442 0.95851 1.03661 1.25777 1.05481 0.99632 1.11169 1.85713 0.97725 1.08270 1.65721 1.17805 0.79439 0.84173 0.83281 1.90817 1.50657 1.59320 1.43153 1.47813 1.58303 1.19721 1.04845 1.18743 0.92202 0.78561 0.95633 1.21768 0.95027 0.92245 1.46923 0.92482 1.25661 0.97166 1.00709 0.95485 1.70022 1.17017 1.19215 1.50801 0.85673 0.79572 0.78471 0.78240 1.18822 1.20641 1.21313 1.21363 0.95093 0.94550 0.89590 1.19935 0.99715 0.96146 0.92869 1.28875 0.92433 0.92732 0.93195 1.81228 1.09999 1.11859 1.11866 0.85923 0.88439 0.87866 0.72136 0.79312 0.80435 0.82222 0.81647 0.95068 0.97521 0.92869 0.89647 0.88984 0.86539 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 10.38 71.24 0.74 -1.55 16 2 C 0.48 13.09 7.87 87.66 0.69 13.78 16 3 O -0.54 -23.43 13.45 11.33 0.15 -23.27 16 4 N -0.64 -13.42 5.25 -299.30 -1.57 -14.99 16 5 C 0.06 1.81 4.54 39.41 0.18 1.98 16 6 C -0.09 -1.95 9.75 22.58 0.22 -1.73 16 7 C -0.19 -4.78 4.79 22.82 0.11 -4.68 16 8 C -0.11 -2.03 10.25 21.82 0.22 -1.81 16 9 C -0.14 -2.87 10.15 21.09 0.21 -2.66 16 10 C -0.28 -7.24 10.91 66.80 0.73 -6.51 16 11 S 0.15 5.07 15.81 -56.49 -0.89 4.18 16 12 C 0.57 23.06 1.19 86.37 0.10 23.16 16 13 O -0.56 -29.10 15.00 9.97 0.15 -28.95 16 14 N -0.58 -23.34 1.64 -831.13 -1.36 -24.70 16 15 C 0.27 13.94 5.21 85.64 0.45 14.39 16 16 C -0.52 -30.11 9.39 25.60 0.24 -29.87 16 17 H 0.06 3.38 6.78 -2.91 -0.02 3.36 16 18 C 0.01 0.45 5.46 84.66 0.46 0.91 16 19 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 20 Si 0.95 46.77 29.54 68.60 2.03 48.80 16 21 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 24 C 0.12 3.64 5.31 86.38 0.46 4.10 16 25 C -0.05 -1.14 5.74 28.79 0.17 -0.97 16 26 C 0.25 6.20 15.43 89.43 1.38 7.58 16 27 N -0.47 -13.65 18.54 20.01 0.37 -13.28 16 28 H 0.12 0.64 7.94 -2.39 -0.02 0.62 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.44 4.03 8.56 -92.71 -0.79 3.24 16 32 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 37 H 0.01 0.40 7.37 -2.38 -0.02 0.38 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.09 2.74 8.11 -2.39 -0.02 2.72 16 40 H 0.09 2.38 6.48 -2.38 -0.02 2.36 16 41 H 0.12 2.84 4.79 -2.39 -0.01 2.83 16 42 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 Total: -1.00 -88.15 373.30 5.80 -82.35 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.28 Total: 9.80 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.36 Total: 16.13 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -2.28 Total: -109.02 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: 0.30 Total: -52.22 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -0.89 Total: 4.18 kcal Total: -88.15 5.80 -82.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543481816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.178 kcal (2) G-P(sol) polarization free energy of solvation -88.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds