Wall clock time and date at job start Wed Apr 1 2020 04:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 116.99906 * 2 1 4 4 O 1.20823 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00042 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47000 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46981 * 180.02562 * 6 5 3 8 8 C 1.37100 * 119.99557 * 269.99933 * 7 6 5 9 9 H 1.08001 * 119.99910 * 140.69965 * 8 7 6 10 10 C 1.38946 * 120.00114 * 320.69231 * 8 7 6 11 11 N 1.31412 * 120.00575 * 159.03779 * 10 8 7 12 12 Si 1.86805 * 120.00182 * 339.03973 * 10 8 7 13 13 H 1.48500 * 109.47325 * 95.81282 * 12 10 8 14 14 H 1.48495 * 109.47390 * 215.81750 * 12 10 8 15 15 H 1.48506 * 109.46825 * 335.81754 * 12 10 8 16 16 C 1.34779 * 120.00434 * 89.99535 * 7 6 5 17 17 O 1.21289 * 119.99698 * 5.01878 * 16 7 6 18 18 C 1.50696 * 120.00124 * 185.01020 * 16 7 6 19 19 C 1.52996 * 109.47146 * 185.43075 * 18 16 7 20 20 C 1.50698 * 109.47086 * 179.22017 * 19 18 16 21 21 N 1.30278 * 126.28753 * 90.02540 * 20 19 18 22 22 N 1.28662 * 109.38132 * 179.97438 * 21 20 19 23 23 C 1.30273 * 109.38653 * 359.97438 * 22 21 20 24 24 C 1.50695 * 126.28842 * 180.02562 * 23 22 21 25 25 F 1.39905 * 109.46886 * 29.97125 * 24 23 22 26 26 F 1.39901 * 109.47506 * 149.97364 * 24 23 22 27 27 O 1.34367 * 126.27867 * 269.71206 * 20 19 18 28 28 H 1.08998 * 109.47573 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47256 * 299.99304 * 1 2 3 30 30 H 1.08999 * 109.47783 * 59.99382 * 1 2 3 31 31 H 1.08999 * 109.46849 * 60.00720 * 5 3 2 32 32 H 1.08992 * 109.47038 * 300.00418 * 5 3 2 33 33 H 1.09000 * 109.47424 * 60.00004 * 6 5 3 34 34 H 1.09006 * 109.47000 * 299.99720 * 6 5 3 35 35 H 0.96993 * 120.00758 * 180.02562 * 11 10 8 36 36 H 1.09008 * 109.46913 * 65.43169 * 18 16 7 37 37 H 1.08996 * 109.47183 * 305.43342 * 18 16 7 38 38 H 1.09003 * 109.46683 * 299.21564 * 19 18 16 39 39 H 1.08990 * 109.47200 * 59.21393 * 19 18 16 40 40 H 1.09002 * 109.47375 * 269.97322 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 7 5.4630 2.8188 -0.0010 8 6 6.1485 2.8538 1.1858 9 1 7.0752 2.3091 1.2904 10 6 5.6511 3.5902 2.2540 11 7 6.0426 3.3182 3.4786 12 14 4.4258 4.9669 1.9493 13 1 3.0459 4.4532 2.1426 14 1 4.6795 6.0757 2.9040 15 1 4.5778 5.4662 0.5590 16 6 6.1351 2.8549 -1.1687 17 8 5.5273 2.9159 -2.2165 18 6 7.6417 2.8198 -1.1724 19 6 8.1527 3.0080 -2.6022 20 6 9.6596 2.9920 -2.6033 21 7 10.4194 1.9433 -2.7452 22 7 11.6543 2.3011 -2.6962 23 6 11.7245 3.5902 -2.5219 24 6 12.9855 4.4079 -2.4113 25 9 14.0014 3.8017 -3.1581 26 9 12.7505 5.6963 -2.9031 27 8 10.4661 4.0576 -2.4638 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.9556 0.7811 -0.8909 32 1 3.9563 0.7806 0.8890 33 1 3.6107 3.2357 0.8906 34 1 3.6099 3.2368 -0.8894 35 1 5.6951 3.8320 4.2243 36 1 7.9836 1.8588 -0.7879 37 1 8.0253 3.6211 -0.5410 38 1 7.7803 2.1988 -3.2305 39 1 7.7991 3.9625 -2.9917 40 1 13.2892 4.4677 -1.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544791631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:19 Heat of formation + Delta-G solvation = -170.728651 kcal Electronic energy + Delta-G solvation = -29952.398169 eV Core-core repulsion = 25020.252320 eV Total energy + Delta-G solvation = -4932.145849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.61905 -47.64254 -44.49485 -40.29292 -39.15482 -36.45407 -36.44380 -35.46278 -34.20928 -32.44798 -31.58277 -30.84012 -27.96017 -27.44406 -25.65100 -25.03441 -23.68303 -23.02802 -21.99980 -20.54960 -19.24423 -18.58902 -18.43604 -17.69463 -17.65772 -17.29070 -16.84012 -16.61473 -16.53310 -16.45005 -16.10831 -15.28116 -14.91107 -14.64637 -14.40912 -14.04942 -13.94774 -13.80086 -13.55003 -13.49811 -13.09228 -12.75264 -12.68971 -12.54177 -12.46214 -12.38905 -12.20264 -12.05722 -11.85419 -11.77536 -11.33025 -11.18575 -10.94708 -10.86221 -10.70712 -10.34681 -10.27793 -10.01418 -9.91578 -9.41423 -8.85417 -8.06001 -6.66629 -4.32251 0.72920 1.61747 2.07231 2.44278 2.82939 2.92222 2.99499 3.15513 3.22686 3.39994 3.46877 3.83526 3.99382 4.12752 4.21527 4.30676 4.74248 4.90382 4.94641 5.04558 5.05505 5.12517 5.18869 5.22672 5.34545 5.44192 5.45507 5.58679 5.71294 5.89107 5.95655 6.09962 6.22172 6.24960 6.42410 6.57000 7.12569 7.84934 7.94717 7.96704 8.01838 8.71293 9.08507 9.40589 10.42622 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.002461 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.834830 B =11374.455871 C =12470.805828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.122 4.122 6 C 0.114 3.886 7 N -0.460 5.460 8 C -0.359 4.359 9 H 0.108 0.892 10 C 0.074 3.926 11 N -0.851 5.851 12 Si 0.868 3.132 13 H -0.268 1.268 14 H -0.285 1.285 15 H -0.259 1.259 16 C 0.487 3.513 17 O -0.594 6.594 18 C -0.118 4.118 19 C -0.015 4.015 20 C 0.209 3.791 21 N -0.286 5.286 22 N -0.237 5.237 23 C 0.063 3.937 24 C 0.391 3.609 25 F -0.169 7.169 26 F -0.180 7.180 27 O -0.202 6.202 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.278 0.722 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 -0.833 -6.423 7.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.399 6.399 5 C -0.161 4.161 6 C -0.009 4.009 7 N -0.180 5.180 8 C -0.485 4.485 9 H 0.125 0.875 10 C -0.135 4.135 11 N -0.485 5.485 12 Si 0.694 3.306 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.183 1.183 16 C 0.277 3.723 17 O -0.479 6.479 18 C -0.159 4.159 19 C -0.054 4.054 20 C -0.001 4.001 21 N -0.133 5.133 22 N -0.086 5.086 23 C -0.150 4.150 24 C 0.336 3.664 25 F -0.150 7.150 26 F -0.161 7.161 27 O -0.080 6.080 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.454 -1.657 -6.897 8.376 hybrid contribution -1.141 1.929 0.334 2.266 sum 3.313 0.272 -6.563 7.357 Atomic orbital electron populations 1.23208 0.77014 1.03297 1.02409 1.86534 1.22989 1.33943 1.84387 1.23988 0.92306 0.81051 0.71629 1.90649 1.67385 1.36346 1.45479 1.21786 0.86213 1.01635 1.06484 1.21405 0.83010 0.93306 1.03218 1.43646 1.03785 1.64580 1.05949 1.19065 1.09703 1.32237 0.87512 0.87463 1.25326 0.96900 0.96591 0.94665 1.69742 1.42652 1.37674 0.98418 0.87051 0.81319 0.82581 0.79616 1.19451 1.21189 1.18267 1.20103 0.89002 0.79586 0.83652 1.90588 1.70273 1.55280 1.31794 1.21375 0.94724 1.05537 0.94243 1.20243 0.77549 1.07176 1.00470 1.28655 0.97819 0.79120 0.94457 1.74549 0.95213 1.24732 1.18843 1.74378 1.13016 1.08511 1.12651 1.28307 0.86759 0.93029 1.06941 1.19285 0.77842 0.73570 0.95749 1.93118 1.58816 1.83345 1.79683 1.93105 1.94552 1.38287 1.90146 1.84833 1.15819 1.39034 1.68318 0.88371 0.92057 0.92084 0.87506 0.86573 0.90602 0.89951 0.91179 0.88480 0.88136 0.85916 0.87494 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.42 10.56 -39.25 -0.41 -5.84 16 3 C 0.47 8.18 7.96 36.01 0.29 8.47 16 4 O -0.51 -10.22 15.73 -18.75 -0.29 -10.52 16 5 C -0.12 -2.16 6.14 -27.88 -0.17 -2.34 16 6 C 0.11 2.38 3.53 -4.04 -0.01 2.37 16 7 N -0.46 -9.87 2.14 -114.81 -0.25 -10.12 16 8 C -0.36 -8.34 8.93 -14.93 -0.13 -8.47 16 9 H 0.11 2.57 7.44 -52.49 -0.39 2.18 16 10 C 0.07 1.82 5.32 -17.47 -0.09 1.73 16 11 N -0.85 -21.89 13.96 55.50 0.77 -21.11 16 12 Si 0.87 19.67 25.02 -169.99 -4.25 15.42 16 13 H -0.27 -6.13 6.71 56.52 0.38 -5.75 16 14 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16 16 C 0.49 9.71 7.62 -10.99 -0.08 9.62 16 17 O -0.59 -12.71 15.54 5.55 0.09 -12.62 16 18 C -0.12 -1.92 4.33 -27.89 -0.12 -2.04 16 19 C -0.02 -0.22 5.14 -27.89 -0.14 -0.36 16 20 C 0.21 3.01 7.73 -12.94 -0.10 2.91 16 21 N -0.29 -4.53 12.22 32.55 0.40 -4.13 16 22 N -0.24 -3.55 12.17 32.55 0.40 -3.16 16 23 C 0.06 0.79 7.95 -12.94 -0.10 0.69 16 24 C 0.39 3.33 5.86 36.00 0.21 3.55 16 25 F -0.17 -1.65 17.28 2.25 0.04 -1.61 16 26 F -0.18 -1.74 17.32 2.25 0.04 -1.71 16 27 O -0.20 -2.79 10.87 5.36 0.06 -2.73 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 33 H 0.08 1.70 3.37 -51.93 -0.18 1.53 16 34 H 0.08 1.77 7.32 -51.93 -0.38 1.39 16 35 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.10 1.53 8.04 -51.92 -0.42 1.11 16 37 H 0.10 1.65 7.86 -51.93 -0.41 1.24 16 38 H 0.12 1.64 8.06 -51.93 -0.42 1.23 16 39 H 0.11 1.41 8.13 -51.93 -0.42 0.99 16 40 H 0.16 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -30.68 362.16 -1.66 -32.34 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.30 Total: 2.74 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 0.60 Total: 17.58 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 1.32 Total: -38.52 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.57 Total: -31.71 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.25 Total: 15.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.68 -1.66 -32.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544791631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.387 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds