Wall clock time and date at job start Wed Apr 1 2020 04:34:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45194 * 1
3 3 C 1.34226 * 116.99906 * 2 1
4 4 O 1.20823 * 120.00142 * 0.02562 * 3 2 1
5 5 C 1.50704 * 120.00042 * 180.02562 * 3 2 1
6 6 C 1.53001 * 109.47000 * 180.02562 * 5 3 2
7 7 N 1.46504 * 109.46981 * 180.02562 * 6 5 3
8 8 C 1.37100 * 119.99557 * 269.99933 * 7 6 5
9 9 H 1.08001 * 119.99910 * 140.69965 * 8 7 6
10 10 C 1.38946 * 120.00114 * 320.69231 * 8 7 6
11 11 N 1.31412 * 120.00575 * 159.03779 * 10 8 7
12 12 Si 1.86805 * 120.00182 * 339.03973 * 10 8 7
13 13 H 1.48500 * 109.47325 * 95.81282 * 12 10 8
14 14 H 1.48495 * 109.47390 * 215.81750 * 12 10 8
15 15 H 1.48506 * 109.46825 * 335.81754 * 12 10 8
16 16 C 1.34779 * 120.00434 * 89.99535 * 7 6 5
17 17 O 1.21289 * 119.99698 * 5.01878 * 16 7 6
18 18 C 1.50696 * 120.00124 * 185.01020 * 16 7 6
19 19 C 1.52996 * 109.47146 * 185.43075 * 18 16 7
20 20 C 1.50698 * 109.47086 * 179.22017 * 19 18 16
21 21 N 1.30278 * 126.28753 * 90.02540 * 20 19 18
22 22 N 1.28662 * 109.38132 * 179.97438 * 21 20 19
23 23 C 1.30273 * 109.38653 * 359.97438 * 22 21 20
24 24 C 1.50695 * 126.28842 * 180.02562 * 23 22 21
25 25 F 1.39905 * 109.46886 * 29.97125 * 24 23 22
26 26 F 1.39901 * 109.47506 * 149.97364 * 24 23 22
27 27 O 1.34367 * 126.27867 * 269.71206 * 20 19 18
28 28 H 1.08998 * 109.47573 * 179.97438 * 1 2 3
29 29 H 1.09003 * 109.47256 * 299.99304 * 1 2 3
30 30 H 1.08999 * 109.47783 * 59.99382 * 1 2 3
31 31 H 1.08999 * 109.46849 * 60.00720 * 5 3 2
32 32 H 1.08992 * 109.47038 * 300.00418 * 5 3 2
33 33 H 1.09000 * 109.47424 * 60.00004 * 6 5 3
34 34 H 1.09006 * 109.47000 * 299.99720 * 6 5 3
35 35 H 0.96993 * 120.00758 * 180.02562 * 11 10 8
36 36 H 1.09008 * 109.46913 * 65.43169 * 18 16 7
37 37 H 1.08996 * 109.47183 * 305.43342 * 18 16 7
38 38 H 1.09003 * 109.46683 * 299.21564 * 19 18 16
39 39 H 1.08990 * 109.47200 * 59.21393 * 19 18 16
40 40 H 1.09002 * 109.47375 * 269.97322 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4519 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 6 4.0000 2.7421 0.0002
7 7 5.4630 2.8188 -0.0010
8 6 6.1485 2.8538 1.1858
9 1 7.0752 2.3091 1.2904
10 6 5.6511 3.5902 2.2540
11 7 6.0426 3.3182 3.4786
12 14 4.4258 4.9669 1.9493
13 1 3.0459 4.4532 2.1426
14 1 4.6795 6.0757 2.9040
15 1 4.5778 5.4662 0.5590
16 6 6.1351 2.8549 -1.1687
17 8 5.5273 2.9159 -2.2165
18 6 7.6417 2.8198 -1.1724
19 6 8.1527 3.0080 -2.6022
20 6 9.6596 2.9920 -2.6033
21 7 10.4194 1.9433 -2.7452
22 7 11.6543 2.3011 -2.6962
23 6 11.7245 3.5902 -2.5219
24 6 12.9855 4.4079 -2.4113
25 9 14.0014 3.8017 -3.1581
26 9 12.7505 5.6963 -2.9031
27 8 10.4661 4.0576 -2.4638
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3634 0.5137 0.8901
30 1 -0.3634 0.5139 -0.8899
31 1 3.9556 0.7811 -0.8909
32 1 3.9563 0.7806 0.8890
33 1 3.6107 3.2357 0.8906
34 1 3.6099 3.2368 -0.8894
35 1 5.6951 3.8320 4.2243
36 1 7.9836 1.8588 -0.7879
37 1 8.0253 3.6211 -0.5410
38 1 7.7803 2.1988 -3.2305
39 1 7.7991 3.9625 -2.9917
40 1 13.2892 4.4677 -1.3661
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001544791631.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:34:19
Heat of formation + Delta-G solvation = -170.728651 kcal
Electronic energy + Delta-G solvation = -29952.398169 eV
Core-core repulsion = 25020.252320 eV
Total energy + Delta-G solvation = -4932.145849 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.117 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-49.61905 -47.64254 -44.49485 -40.29292 -39.15482 -36.45407 -36.44380 -35.46278
-34.20928 -32.44798 -31.58277 -30.84012 -27.96017 -27.44406 -25.65100 -25.03441
-23.68303 -23.02802 -21.99980 -20.54960 -19.24423 -18.58902 -18.43604 -17.69463
-17.65772 -17.29070 -16.84012 -16.61473 -16.53310 -16.45005 -16.10831 -15.28116
-14.91107 -14.64637 -14.40912 -14.04942 -13.94774 -13.80086 -13.55003 -13.49811
-13.09228 -12.75264 -12.68971 -12.54177 -12.46214 -12.38905 -12.20264 -12.05722
-11.85419 -11.77536 -11.33025 -11.18575 -10.94708 -10.86221 -10.70712 -10.34681
-10.27793 -10.01418 -9.91578 -9.41423 -8.85417 -8.06001 -6.66629 -4.32251
0.72920 1.61747 2.07231 2.44278 2.82939 2.92222 2.99499 3.15513
3.22686 3.39994 3.46877 3.83526 3.99382 4.12752 4.21527 4.30676
4.74248 4.90382 4.94641 5.04558 5.05505 5.12517 5.18869 5.22672
5.34545 5.44192 5.45507 5.58679 5.71294 5.89107 5.95655 6.09962
6.22172 6.24960 6.42410 6.57000 7.12569 7.84934 7.94717 7.96704
8.01838 8.71293 9.08507 9.40589 10.42622
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.014971 B = 0.002461 C = 0.002245
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1869.834830 B =11374.455871 C =12470.805828
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.362 6.362
3 C 0.467 3.533
4 O -0.511 6.511
5 C -0.122 4.122
6 C 0.114 3.886
7 N -0.460 5.460
8 C -0.359 4.359
9 H 0.108 0.892
10 C 0.074 3.926
11 N -0.851 5.851
12 Si 0.868 3.132
13 H -0.268 1.268
14 H -0.285 1.285
15 H -0.259 1.259
16 C 0.487 3.513
17 O -0.594 6.594
18 C -0.118 4.118
19 C -0.015 4.015
20 C 0.209 3.791
21 N -0.286 5.286
22 N -0.237 5.237
23 C 0.063 3.937
24 C 0.391 3.609
25 F -0.169 7.169
26 F -0.180 7.180
27 O -0.202 6.202
28 H 0.098 0.902
29 H 0.061 0.939
30 H 0.060 0.940
31 H 0.107 0.893
32 H 0.116 0.884
33 H 0.076 0.924
34 H 0.082 0.918
35 H 0.278 0.722
36 H 0.097 0.903
37 H 0.100 0.900
38 H 0.123 0.877
39 H 0.107 0.893
40 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.611 -0.833 -6.423 7.950
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.279 6.279
3 C 0.310 3.690
4 O -0.399 6.399
5 C -0.161 4.161
6 C -0.009 4.009
7 N -0.180 5.180
8 C -0.485 4.485
9 H 0.125 0.875
10 C -0.135 4.135
11 N -0.485 5.485
12 Si 0.694 3.306
13 H -0.195 1.195
14 H -0.212 1.212
15 H -0.183 1.183
16 C 0.277 3.723
17 O -0.479 6.479
18 C -0.159 4.159
19 C -0.054 4.054
20 C -0.001 4.001
21 N -0.133 5.133
22 N -0.086 5.086
23 C -0.150 4.150
24 C 0.336 3.664
25 F -0.150 7.150
26 F -0.161 7.161
27 O -0.080 6.080
28 H 0.116 0.884
29 H 0.079 0.921
30 H 0.079 0.921
31 H 0.125 0.875
32 H 0.134 0.866
33 H 0.094 0.906
34 H 0.100 0.900
35 H 0.088 0.912
36 H 0.115 0.885
37 H 0.119 0.881
38 H 0.141 0.859
39 H 0.125 0.875
40 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges 4.454 -1.657 -6.897 8.376
hybrid contribution -1.141 1.929 0.334 2.266
sum 3.313 0.272 -6.563 7.357
Atomic orbital electron populations
1.23208 0.77014 1.03297 1.02409 1.86534 1.22989 1.33943 1.84387
1.23988 0.92306 0.81051 0.71629 1.90649 1.67385 1.36346 1.45479
1.21786 0.86213 1.01635 1.06484 1.21405 0.83010 0.93306 1.03218
1.43646 1.03785 1.64580 1.05949 1.19065 1.09703 1.32237 0.87512
0.87463 1.25326 0.96900 0.96591 0.94665 1.69742 1.42652 1.37674
0.98418 0.87051 0.81319 0.82581 0.79616 1.19451 1.21189 1.18267
1.20103 0.89002 0.79586 0.83652 1.90588 1.70273 1.55280 1.31794
1.21375 0.94724 1.05537 0.94243 1.20243 0.77549 1.07176 1.00470
1.28655 0.97819 0.79120 0.94457 1.74549 0.95213 1.24732 1.18843
1.74378 1.13016 1.08511 1.12651 1.28307 0.86759 0.93029 1.06941
1.19285 0.77842 0.73570 0.95749 1.93118 1.58816 1.83345 1.79683
1.93105 1.94552 1.38287 1.90146 1.84833 1.15819 1.39034 1.68318
0.88371 0.92057 0.92084 0.87506 0.86573 0.90602 0.89951 0.91179
0.88480 0.88136 0.85916 0.87494 0.82521
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.39 10.56 101.05 1.07 1.46 16
2 O -0.36 -5.42 10.56 -39.25 -0.41 -5.84 16
3 C 0.47 8.18 7.96 36.01 0.29 8.47 16
4 O -0.51 -10.22 15.73 -18.75 -0.29 -10.52 16
5 C -0.12 -2.16 6.14 -27.88 -0.17 -2.34 16
6 C 0.11 2.38 3.53 -4.04 -0.01 2.37 16
7 N -0.46 -9.87 2.14 -114.81 -0.25 -10.12 16
8 C -0.36 -8.34 8.93 -14.93 -0.13 -8.47 16
9 H 0.11 2.57 7.44 -52.49 -0.39 2.18 16
10 C 0.07 1.82 5.32 -17.47 -0.09 1.73 16
11 N -0.85 -21.89 13.96 55.50 0.77 -21.11 16
12 Si 0.87 19.67 25.02 -169.99 -4.25 15.42 16
13 H -0.27 -6.13 6.71 56.52 0.38 -5.75 16
14 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16
15 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16
16 C 0.49 9.71 7.62 -10.99 -0.08 9.62 16
17 O -0.59 -12.71 15.54 5.55 0.09 -12.62 16
18 C -0.12 -1.92 4.33 -27.89 -0.12 -2.04 16
19 C -0.02 -0.22 5.14 -27.89 -0.14 -0.36 16
20 C 0.21 3.01 7.73 -12.94 -0.10 2.91 16
21 N -0.29 -4.53 12.22 32.55 0.40 -4.13 16
22 N -0.24 -3.55 12.17 32.55 0.40 -3.16 16
23 C 0.06 0.79 7.95 -12.94 -0.10 0.69 16
24 C 0.39 3.33 5.86 36.00 0.21 3.55 16
25 F -0.17 -1.65 17.28 2.25 0.04 -1.61 16
26 F -0.18 -1.74 17.32 2.25 0.04 -1.71 16
27 O -0.20 -2.79 10.87 5.36 0.06 -2.73 16
28 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16
29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16
30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16
31 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16
32 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16
33 H 0.08 1.70 3.37 -51.93 -0.18 1.53 16
34 H 0.08 1.77 7.32 -51.93 -0.38 1.39 16
35 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16
36 H 0.10 1.53 8.04 -51.92 -0.42 1.11 16
37 H 0.10 1.65 7.86 -51.93 -0.41 1.24 16
38 H 0.12 1.64 8.06 -51.93 -0.42 1.23 16
39 H 0.11 1.41 8.13 -51.93 -0.42 0.99 16
40 H 0.16 0.64 8.14 -51.93 -0.42 0.22 16
LS Contribution 362.16 15.07 5.46 5.46
Total: -1.00 -30.68 362.16 -1.66 -32.34
By element:
Atomic # 1 Polarization: 7.05 SS G_CDS: -4.30 Total: 2.74 kcal
Atomic # 6 Polarization: 16.98 SS G_CDS: 0.60 Total: 17.58 kcal
Atomic # 7 Polarization: -39.84 SS G_CDS: 1.32 Total: -38.52 kcal
Atomic # 8 Polarization: -31.14 SS G_CDS: -0.57 Total: -31.71 kcal
Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal
Atomic # 14 Polarization: 19.67 SS G_CDS: -4.25 Total: 15.42 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -30.68 -1.66 -32.34 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001544791631.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -138.387 kcal
(2) G-P(sol) polarization free energy of solvation -30.679 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.342 kcal
(6) G-S(sol) free energy of system = (1) + (5) -170.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds