Wall clock time and date at job start Wed Apr 1 2020 04:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 116.99906 * 2 1 4 4 O 1.20823 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00042 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47000 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46981 * 180.02562 * 6 5 3 8 8 C 1.37100 * 119.99557 * 269.99933 * 7 6 5 9 9 H 1.08001 * 119.99910 * 140.69965 * 8 7 6 10 10 C 1.38946 * 120.00114 * 320.69231 * 8 7 6 11 11 N 1.31412 * 120.00575 * 159.03779 * 10 8 7 12 12 Si 1.86805 * 120.00182 * 339.03973 * 10 8 7 13 13 H 1.48500 * 109.47325 * 95.81282 * 12 10 8 14 14 H 1.48495 * 109.47390 * 215.81750 * 12 10 8 15 15 H 1.48506 * 109.46825 * 335.81754 * 12 10 8 16 16 C 1.34779 * 120.00434 * 89.99535 * 7 6 5 17 17 O 1.21289 * 119.99698 * 5.01878 * 16 7 6 18 18 C 1.50696 * 120.00124 * 185.01020 * 16 7 6 19 19 C 1.52996 * 109.47146 * 185.43075 * 18 16 7 20 20 C 1.50698 * 109.47086 * 179.22017 * 19 18 16 21 21 N 1.30278 * 126.28753 * 90.02540 * 20 19 18 22 22 N 1.28662 * 109.38132 * 179.97438 * 21 20 19 23 23 C 1.30273 * 109.38653 * 359.97438 * 22 21 20 24 24 C 1.50695 * 126.28842 * 180.02562 * 23 22 21 25 25 F 1.39905 * 109.46886 * 29.97125 * 24 23 22 26 26 F 1.39901 * 109.47506 * 149.97364 * 24 23 22 27 27 O 1.34367 * 126.27867 * 269.71206 * 20 19 18 28 28 H 1.08998 * 109.47573 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47256 * 299.99304 * 1 2 3 30 30 H 1.08999 * 109.47783 * 59.99382 * 1 2 3 31 31 H 1.08999 * 109.46849 * 60.00720 * 5 3 2 32 32 H 1.08992 * 109.47038 * 300.00418 * 5 3 2 33 33 H 1.09000 * 109.47424 * 60.00004 * 6 5 3 34 34 H 1.09006 * 109.47000 * 299.99720 * 6 5 3 35 35 H 0.96993 * 120.00758 * 180.02562 * 11 10 8 36 36 H 1.09008 * 109.46913 * 65.43169 * 18 16 7 37 37 H 1.08996 * 109.47183 * 305.43342 * 18 16 7 38 38 H 1.09003 * 109.46683 * 299.21564 * 19 18 16 39 39 H 1.08990 * 109.47200 * 59.21393 * 19 18 16 40 40 H 1.09002 * 109.47375 * 269.97322 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 7 5.4630 2.8188 -0.0010 8 6 6.1485 2.8538 1.1858 9 1 7.0752 2.3091 1.2904 10 6 5.6511 3.5902 2.2540 11 7 6.0426 3.3182 3.4786 12 14 4.4258 4.9669 1.9493 13 1 3.0459 4.4532 2.1426 14 1 4.6795 6.0757 2.9040 15 1 4.5778 5.4662 0.5590 16 6 6.1351 2.8549 -1.1687 17 8 5.5273 2.9159 -2.2165 18 6 7.6417 2.8198 -1.1724 19 6 8.1527 3.0080 -2.6022 20 6 9.6596 2.9920 -2.6033 21 7 10.4194 1.9433 -2.7452 22 7 11.6543 2.3011 -2.6962 23 6 11.7245 3.5902 -2.5219 24 6 12.9855 4.4079 -2.4113 25 9 14.0014 3.8017 -3.1581 26 9 12.7505 5.6963 -2.9031 27 8 10.4661 4.0576 -2.4638 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.9556 0.7811 -0.8909 32 1 3.9563 0.7806 0.8890 33 1 3.6107 3.2357 0.8906 34 1 3.6099 3.2368 -0.8894 35 1 5.6951 3.8320 4.2243 36 1 7.9836 1.8588 -0.7879 37 1 8.0253 3.6211 -0.5410 38 1 7.7803 2.1988 -3.2305 39 1 7.7991 3.9625 -2.9917 40 1 13.2892 4.4677 -1.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544791631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:18 Heat of formation + Delta-G solvation = -193.585642 kcal Electronic energy + Delta-G solvation = -29953.389322 eV Core-core repulsion = 25020.252320 eV Total energy + Delta-G solvation = -4933.137002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.117 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.34124 -48.37043 -45.57468 -41.66349 -40.75821 -37.79028 -37.54137 -37.07678 -35.47898 -34.22118 -32.95132 -32.12209 -29.03130 -28.45270 -27.05998 -26.63194 -25.04861 -24.00450 -23.18659 -21.90917 -20.94119 -19.45116 -19.36934 -19.07341 -18.57222 -18.42727 -18.21037 -17.93068 -17.83462 -17.68066 -17.45510 -16.78692 -16.40312 -16.02804 -15.52941 -15.18128 -14.99564 -14.95796 -14.67763 -14.49986 -14.48106 -14.33165 -14.01213 -13.87993 -13.77420 -13.60516 -13.36308 -13.23351 -13.07003 -13.01913 -12.87336 -12.68520 -12.38772 -12.12766 -12.08615 -11.88054 -11.78430 -11.66301 -11.20173 -11.01828 -10.55102 -9.82868 -8.55681 -6.19356 -0.30716 0.66186 0.97234 1.06569 1.18485 1.31600 1.39259 1.56184 1.84296 1.98971 2.14551 2.57068 2.77721 2.88107 3.01186 3.31739 3.60394 3.70403 3.80428 3.86784 3.90307 3.99962 4.02485 4.06095 4.19165 4.29029 4.30084 4.34143 4.44617 4.60697 4.66866 4.68044 4.84260 4.85937 4.99377 5.27138 5.36778 6.05076 6.18225 6.62407 6.88168 6.90286 7.33016 7.68270 8.57173 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.002461 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.834830 B =11374.455871 C =12470.805828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.541 6.541 5 C -0.115 4.115 6 C 0.112 3.888 7 N -0.472 5.472 8 C -0.341 4.341 9 H 0.100 0.900 10 C 0.046 3.954 11 N -0.885 5.885 12 Si 0.906 3.094 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.266 1.266 16 C 0.489 3.511 17 O -0.605 6.605 18 C -0.110 4.110 19 C -0.005 4.005 20 C 0.207 3.793 21 N -0.307 5.307 22 N -0.267 5.267 23 C 0.076 3.924 24 C 0.394 3.606 25 F -0.175 7.175 26 F -0.185 7.185 27 O -0.206 6.206 28 H 0.137 0.863 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.280 0.720 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -1.062 -6.940 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.431 6.431 5 C -0.154 4.154 6 C -0.012 4.012 7 N -0.193 5.193 8 C -0.468 4.468 9 H 0.118 0.882 10 C -0.160 4.160 11 N -0.521 5.521 12 Si 0.733 3.267 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.191 1.191 16 C 0.280 3.720 17 O -0.491 6.491 18 C -0.151 4.151 19 C -0.043 4.043 20 C -0.003 4.003 21 N -0.154 5.154 22 N -0.114 5.114 23 C -0.138 4.138 24 C 0.339 3.661 25 F -0.156 7.156 26 F -0.166 7.166 27 O -0.085 6.085 28 H 0.155 0.845 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.877 -1.912 -7.433 9.094 hybrid contribution -1.280 1.957 0.388 2.370 sum 3.597 0.045 -7.046 7.911 Atomic orbital electron populations 1.23600 0.74645 1.05949 1.02525 1.86509 1.25226 1.32230 1.83645 1.23840 0.92159 0.81352 0.70955 1.90639 1.67959 1.37461 1.47078 1.21635 0.86850 0.99544 1.07360 1.21328 0.82760 0.95239 1.01830 1.43742 1.04030 1.65618 1.05922 1.18989 1.09181 1.30908 0.87742 0.88220 1.25652 0.97949 0.97728 0.94703 1.69778 1.44417 1.38953 0.98968 0.86464 0.79996 0.81374 0.78881 1.20184 1.20933 1.19051 1.20649 0.90412 0.78099 0.82853 1.90582 1.71071 1.55371 1.32060 1.21302 0.91925 1.05870 0.95967 1.20120 0.77409 1.07897 0.98922 1.28559 0.97825 0.79119 0.94786 1.74492 0.95831 1.25584 1.19471 1.74324 1.12773 1.09868 1.14463 1.29241 0.87437 0.92885 1.04197 1.20004 0.75845 0.72352 0.97913 1.93107 1.58771 1.83505 1.80241 1.93096 1.94492 1.38548 1.90475 1.84846 1.16318 1.38895 1.68409 0.84473 0.92179 0.91829 0.86069 0.86156 0.92276 0.90944 0.90994 0.87847 0.88140 0.85331 0.86695 0.77192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.36 -10.19 10.56 -51.38 -0.54 -10.73 16 3 C 0.47 16.18 7.96 71.24 0.57 16.74 16 4 O -0.54 -21.51 15.73 21.97 0.35 -21.17 16 5 C -0.12 -3.99 6.14 29.85 0.18 -3.81 16 6 C 0.11 4.65 3.53 86.38 0.31 4.95 16 7 N -0.47 -20.00 2.14 -635.53 -1.36 -21.37 16 8 C -0.34 -15.72 8.93 84.04 0.75 -14.97 16 9 H 0.10 4.73 7.44 -2.91 -0.02 4.71 16 10 C 0.05 2.23 5.32 84.93 0.45 2.68 16 11 N -0.89 -45.60 13.96 21.66 0.30 -45.30 16 12 Si 0.91 40.70 25.02 68.60 1.72 42.42 16 13 H -0.27 -12.56 6.71 99.48 0.67 -11.90 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 16 C 0.49 19.00 7.62 87.66 0.67 19.67 16 17 O -0.61 -25.20 15.54 -3.06 -0.05 -25.25 16 18 C -0.11 -3.44 4.33 29.85 0.13 -3.31 16 19 C 0.00 -0.12 5.14 29.85 0.15 0.03 16 20 C 0.21 5.71 7.73 88.34 0.68 6.40 16 21 N -0.31 -9.45 12.22 -165.50 -2.02 -11.47 16 22 N -0.27 -7.71 12.17 -165.50 -2.01 -9.72 16 23 C 0.08 1.78 7.95 88.34 0.70 2.49 16 24 C 0.39 5.66 5.86 71.23 0.42 6.08 16 25 F -0.18 -3.06 17.28 44.97 0.78 -2.29 16 26 F -0.19 -3.16 17.32 44.97 0.78 -2.38 16 27 O -0.21 -5.36 10.87 -3.75 -0.04 -5.40 16 28 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 30 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 31 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 32 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 33 H 0.06 2.66 3.37 -2.39 -0.01 2.65 16 34 H 0.07 3.12 7.32 -2.38 -0.02 3.10 16 35 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.10 3.14 8.04 -2.38 -0.02 3.12 16 37 H 0.10 3.18 7.86 -2.39 -0.02 3.16 16 38 H 0.13 3.26 8.06 -2.39 -0.02 3.24 16 39 H 0.11 2.86 8.13 -2.39 -0.02 2.84 16 40 H 0.21 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -65.63 362.16 5.17 -60.46 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.07 Total: 13.53 kcal Atomic # 6 Polarization: 32.46 SS G_CDS: 6.21 Total: 38.67 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -5.10 Total: -87.85 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -0.29 Total: -62.55 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 1.56 Total: -4.67 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.72 Total: 42.42 kcal Total: -65.63 5.17 -60.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544791631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.128 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds